HEADER TRANSFERASE 11-JUL-23 8PQF TITLE C-KIT KINASE DOMAIN IN COMPLEX WITH AVAPRITINIB DERIVATIVE 12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAST/STEM CELL GROWTH FACTOR RECEPTOR KIT; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: SCFR,PIEBALD TRAIT PROTEIN,PBT,PROTO-ONCOGENE C-KIT, COMPND 5 TYROSINE-PROTEIN KINASE KIT,P145 C-KIT,V-KIT HARDY-ZUCKERMAN 4 FELINE COMPND 6 SARCOMA VIRAL ONCOGENE HOMOLOG; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIT, SCFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS C-KIT PROTEIN KINASE, AVAPRITINIB, INHIBITOR, TYROSINE KINASE, KEYWDS 2 TRANSMEMBRANE RECEPTOR, STEM CELL FACTOR, SCF, STEM CELL FACTOR KEYWDS 3 RECEPTOR, GIST, GASTROINTESTINAL STROMAL TUMORS, P10721, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TEUBER,M.P.MUELLER,D.RAUH REVDAT 4 07-AUG-24 8PQF 1 REMARK REVDAT 3 13-MAR-24 8PQF 1 REMARK REVDAT 2 17-JAN-24 8PQF 1 JRNL REVDAT 1 27-DEC-23 8PQF 0 JRNL AUTH A.TEUBER,T.SCHULZ,B.S.FLETCHER,R.GONTLA,T.MUHLENBERG, JRNL AUTH 2 M.L.ZISCHINSKY,J.NIGGENABER,J.WEISNER,S.B.KLEINBOLTING, JRNL AUTH 3 J.LATEGAHN,S.SIEVERS,M.P.MULLER,S.BAUER,D.RAUH JRNL TITL AVAPRITINIB-BASED SAR STUDIES UNVEIL A BINDING POCKET IN KIT JRNL TITL 2 AND PDGFRA. JRNL REF NAT COMMUN V. 15 63 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38167404 JRNL DOI 10.1038/S41467-023-44376-8 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 53176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0000 - 5.0700 1.00 2879 151 0.1818 0.1940 REMARK 3 2 5.0700 - 4.0200 1.00 2737 144 0.1445 0.1587 REMARK 3 3 4.0200 - 3.5100 1.00 2703 142 0.1599 0.1803 REMARK 3 4 3.5100 - 3.1900 1.00 2675 141 0.1966 0.2537 REMARK 3 5 3.1900 - 2.9600 1.00 2660 140 0.2237 0.2474 REMARK 3 6 2.9600 - 2.7900 1.00 2664 141 0.2298 0.2176 REMARK 3 7 2.7900 - 2.6500 1.00 2658 139 0.2327 0.2485 REMARK 3 8 2.6500 - 2.5400 1.00 2652 140 0.2271 0.2275 REMARK 3 9 2.5300 - 2.4400 1.00 2637 139 0.2154 0.2943 REMARK 3 10 2.4400 - 2.3500 1.00 2634 139 0.2121 0.2402 REMARK 3 11 2.3500 - 2.2800 1.00 2616 137 0.2132 0.2305 REMARK 3 12 2.2800 - 2.2100 1.00 2656 140 0.2119 0.2412 REMARK 3 13 2.2100 - 2.1600 1.00 2608 138 0.2163 0.2691 REMARK 3 14 2.1600 - 2.1000 1.00 2635 138 0.2163 0.2279 REMARK 3 15 2.1000 - 2.0600 1.00 2631 139 0.2440 0.2799 REMARK 3 16 2.0600 - 2.0100 1.00 2608 137 0.2584 0.3124 REMARK 3 17 2.0100 - 1.9700 1.00 2607 137 0.2808 0.3128 REMARK 3 18 1.9700 - 1.9300 1.00 2604 138 0.3050 0.3468 REMARK 3 19 1.9300 - 1.9000 1.00 2653 139 0.3447 0.3412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.227 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4888 REMARK 3 ANGLE : 0.634 6659 REMARK 3 CHIRALITY : 0.042 719 REMARK 3 PLANARITY : 0.005 845 REMARK 3 DIHEDRAL : 14.104 1754 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 631 THROUGH 765 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1333 4.7518 -3.1116 REMARK 3 T TENSOR REMARK 3 T11: 0.3988 T22: 0.3967 REMARK 3 T33: 0.4106 T12: 0.0284 REMARK 3 T13: 0.0279 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.4039 L22: 0.1346 REMARK 3 L33: 1.6442 L12: 0.1547 REMARK 3 L13: 0.4476 L23: -0.4513 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: -0.0015 S13: 0.0219 REMARK 3 S21: -0.0847 S22: -0.0141 S23: 0.0704 REMARK 3 S31: -0.2969 S32: -0.2704 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 766 THROUGH 932 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3708 -1.7862 11.7969 REMARK 3 T TENSOR REMARK 3 T11: 0.3414 T22: 0.3640 REMARK 3 T33: 0.3765 T12: 0.0090 REMARK 3 T13: 0.0142 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.3698 L22: 1.7199 REMARK 3 L33: 2.0691 L12: -0.3546 REMARK 3 L13: 0.1826 L23: 0.5351 REMARK 3 S TENSOR REMARK 3 S11: 0.0654 S12: -0.0246 S13: -0.0505 REMARK 3 S21: 0.0111 S22: -0.0486 S23: 0.0401 REMARK 3 S31: 0.0250 S32: -0.1803 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 566 THROUGH 677 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3050 -20.5727 61.8746 REMARK 3 T TENSOR REMARK 3 T11: 0.4194 T22: 0.3784 REMARK 3 T33: 0.3815 T12: 0.0406 REMARK 3 T13: -0.0013 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.9818 L22: 1.1686 REMARK 3 L33: 1.7275 L12: 0.0627 REMARK 3 L13: -0.7494 L23: 0.5253 REMARK 3 S TENSOR REMARK 3 S11: -0.1393 S12: -0.1740 S13: -0.1497 REMARK 3 S21: 0.0649 S22: -0.0548 S23: 0.0766 REMARK 3 S31: -0.0061 S32: -0.0462 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 678 THROUGH 931 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5591 -26.4662 37.8572 REMARK 3 T TENSOR REMARK 3 T11: 0.3877 T22: 0.3473 REMARK 3 T33: 0.3551 T12: 0.0589 REMARK 3 T13: -0.0322 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 1.4868 L22: 2.0867 REMARK 3 L33: 2.7298 L12: -0.4572 REMARK 3 L13: 0.0376 L23: 0.8353 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: -0.0284 S13: 0.0314 REMARK 3 S21: -0.1517 S22: -0.1521 S23: 0.1039 REMARK 3 S31: -0.4311 S32: -0.1333 S33: -0.0008 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 566 THROUGH 630 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2554 -0.9833 -14.4677 REMARK 3 T TENSOR REMARK 3 T11: 0.3674 T22: 0.3968 REMARK 3 T33: 0.3847 T12: -0.0040 REMARK 3 T13: 0.0214 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.8393 L22: 0.8096 REMARK 3 L33: 1.4221 L12: 0.8469 REMARK 3 L13: 0.1255 L23: -0.0941 REMARK 3 S TENSOR REMARK 3 S11: -0.0611 S12: 0.1800 S13: -0.0685 REMARK 3 S21: -0.2954 S22: 0.0557 S23: -0.1090 REMARK 3 S31: -0.1137 S32: -0.1260 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292130378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53195 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.36 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.86 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 MG/ML, 21% PEG3350, 125 MM LI3 REMARK 280 -CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.04500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.04500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 548 REMARK 465 SER A 549 REMARK 465 MET A 550 REMARK 465 PRO A 551 REMARK 465 MET A 552 REMARK 465 TYR A 553 REMARK 465 GLU A 554 REMARK 465 VAL A 555 REMARK 465 GLN A 556 REMARK 465 TRP A 557 REMARK 465 LYS A 558 REMARK 465 VAL A 559 REMARK 465 VAL A 560 REMARK 465 GLU A 561 REMARK 465 GLU A 562 REMARK 465 SER A 563 REMARK 465 ASN A 564 REMARK 465 GLY A 565 REMARK 465 GLY A 663 REMARK 465 LYS A 753 REMARK 465 VAL A 754 REMARK 465 ALA A 755 REMARK 465 PRO A 756 REMARK 465 GLU A 757 REMARK 465 ASP A 758 REMARK 465 LEU A 759 REMARK 465 TYR A 760 REMARK 465 LYS A 761 REMARK 465 LYS A 826 REMARK 465 GLY A 827 REMARK 465 THR A 932 REMARK 465 ASN A 933 REMARK 465 HIS A 934 REMARK 465 GLY C 548 REMARK 465 SER C 549 REMARK 465 MET C 550 REMARK 465 PRO C 551 REMARK 465 MET C 552 REMARK 465 TYR C 553 REMARK 465 GLU C 554 REMARK 465 VAL C 555 REMARK 465 GLN C 556 REMARK 465 TRP C 557 REMARK 465 LYS C 558 REMARK 465 VAL C 559 REMARK 465 VAL C 560 REMARK 465 GLU C 561 REMARK 465 GLU C 562 REMARK 465 SER C 563 REMARK 465 ASN C 564 REMARK 465 GLY C 565 REMARK 465 VAL C 754 REMARK 465 ALA C 755 REMARK 465 PRO C 756 REMARK 465 GLU C 757 REMARK 465 ASP C 758 REMARK 465 LEU C 759 REMARK 465 TYR C 760 REMARK 465 LYS C 761 REMARK 465 ASN C 819 REMARK 465 ASP C 820 REMARK 465 ASN C 933 REMARK 465 HIS C 934 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 566 CG OD1 ND2 REMARK 470 LYS A 593 CG CD CE NZ REMARK 470 LYS A 626 CG CD CE NZ REMARK 470 HIS A 630 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 633 CG CD OE1 OE2 REMARK 470 ASP A 687 CG OD1 OD2 REMARK 470 ASP A 762 CG OD1 OD2 REMARK 470 GLU A 767 CG CD OE1 OE2 REMARK 470 LYS A 818 CG CD CE NZ REMARK 470 ASN A 819 CG OD1 ND2 REMARK 470 ASP A 820 CG OD1 OD2 REMARK 470 SER A 821 OG REMARK 470 LYS A 918 CG CD CE NZ REMARK 470 LYS A 926 CG CD CE NZ REMARK 470 ILE A 928 CG1 CG2 CD1 REMARK 470 SER A 931 OG REMARK 470 ASN C 566 CG OD1 ND2 REMARK 470 LYS C 593 CG CD CE NZ REMARK 470 ILE C 612 CG1 CG2 CD1 REMARK 470 LYS C 613 CG CD CE NZ REMARK 470 SER C 614 OG REMARK 470 ASP C 615 CG OD1 OD2 REMARK 470 LYS C 626 CG CD CE NZ REMARK 470 ASP C 687 CG OD1 OD2 REMARK 470 LYS C 693 CG CD CE NZ REMARK 470 ASP C 762 CG OD1 OD2 REMARK 470 PHE C 763 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 818 CG CD CE NZ REMARK 470 LYS C 826 CG CD CE NZ REMARK 470 LYS C 878 CG CD CE NZ REMARK 470 GLN C 922 CG CD OE1 NE2 REMARK 470 LYS C 926 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 791 -1.95 77.26 REMARK 500 ASP A 792 46.13 -143.71 REMARK 500 ASP A 810 84.18 58.56 REMARK 500 SER A 821 -7.05 66.44 REMARK 500 ILE C 612 -61.28 -92.81 REMARK 500 ASP C 792 41.96 -145.29 REMARK 500 ASP C 810 84.55 58.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PQF A 551 687 UNP P10721 KIT_HUMAN 551 687 DBREF 8PQF A 766 934 UNP P10721 KIT_HUMAN 766 934 DBREF 8PQF C 551 687 UNP P10721 KIT_HUMAN 551 687 DBREF 8PQF C 766 934 UNP P10721 KIT_HUMAN 766 934 SEQADV 8PQF GLY A 548 UNP P10721 EXPRESSION TAG SEQADV 8PQF SER A 549 UNP P10721 EXPRESSION TAG SEQADV 8PQF MET A 550 UNP P10721 EXPRESSION TAG SEQADV 8PQF SER A 563 UNP P10721 ILE 563 ENGINEERED MUTATION SEQADV 8PQF SER A 569 UNP P10721 VAL 569 ENGINEERED MUTATION SEQADV 8PQF GLN A 609 UNP P10721 TYR 609 ENGINEERED MUTATION SEQADV 8PQF SER A 631 UNP P10721 LEU 631 ENGINEERED MUTATION SEQADV 8PQF GLU A 651 UNP P10721 MET 651 ENGINEERED MUTATION SEQADV 8PQF HIS A 662 UNP P10721 ILE 662 ENGINEERED MUTATION SEQADV 8PQF GLU A 688 UNP P10721 LINKER SEQADV 8PQF PHE A 689 UNP P10721 LINKER SEQADV 8PQF VAL A 690 UNP P10721 LINKER SEQADV 8PQF PRO A 691 UNP P10721 LINKER SEQADV 8PQF TYR A 692 UNP P10721 LINKER SEQADV 8PQF LYS A 753 UNP P10721 LINKER SEQADV 8PQF VAL A 754 UNP P10721 LINKER SEQADV 8PQF ALA A 755 UNP P10721 LINKER SEQADV 8PQF PRO A 756 UNP P10721 LINKER SEQADV 8PQF GLU A 757 UNP P10721 LINKER SEQADV 8PQF ASP A 758 UNP P10721 LINKER SEQADV 8PQF LEU A 759 UNP P10721 LINKER SEQADV 8PQF TYR A 760 UNP P10721 LINKER SEQADV 8PQF LYS A 761 UNP P10721 LINKER SEQADV 8PQF ASP A 762 UNP P10721 LINKER SEQADV 8PQF PHE A 763 UNP P10721 LINKER SEQADV 8PQF LEU A 764 UNP P10721 LINKER SEQADV 8PQF THR A 765 UNP P10721 LINKER SEQADV 8PQF HIS A 768 UNP P10721 ASP 768 ENGINEERED MUTATION SEQADV 8PQF ASN A 804 UNP P10721 ARG 804 ENGINEERED MUTATION SEQADV 8PQF ASP A 825 UNP P10721 VAL 825 ENGINEERED MUTATION SEQADV 8PQF SER A 844 UNP P10721 CYS 844 ENGINEERED MUTATION SEQADV 8PQF SER A 890 UNP P10721 LEU 890 ENGINEERED MUTATION SEQADV 8PQF TYR A 894 UNP P10721 HIS 894 ENGINEERED MUTATION SEQADV 8PQF ASP A 912 UNP P10721 LEU 912 ENGINEERED MUTATION SEQADV 8PQF ASP A 923 UNP P10721 LEU 923 ENGINEERED MUTATION SEQADV 8PQF GLY C 548 UNP P10721 EXPRESSION TAG SEQADV 8PQF SER C 549 UNP P10721 EXPRESSION TAG SEQADV 8PQF MET C 550 UNP P10721 EXPRESSION TAG SEQADV 8PQF SER C 563 UNP P10721 ILE 563 ENGINEERED MUTATION SEQADV 8PQF SER C 569 UNP P10721 VAL 569 ENGINEERED MUTATION SEQADV 8PQF GLN C 609 UNP P10721 TYR 609 ENGINEERED MUTATION SEQADV 8PQF SER C 631 UNP P10721 LEU 631 ENGINEERED MUTATION SEQADV 8PQF GLU C 651 UNP P10721 MET 651 ENGINEERED MUTATION SEQADV 8PQF HIS C 662 UNP P10721 ILE 662 ENGINEERED MUTATION SEQADV 8PQF GLU C 688 UNP P10721 LINKER SEQADV 8PQF PHE C 689 UNP P10721 LINKER SEQADV 8PQF VAL C 690 UNP P10721 LINKER SEQADV 8PQF PRO C 691 UNP P10721 LINKER SEQADV 8PQF TYR C 692 UNP P10721 LINKER SEQADV 8PQF LYS C 693 UNP P10721 LINKER SEQADV 8PQF VAL C 754 UNP P10721 LINKER SEQADV 8PQF ALA C 755 UNP P10721 LINKER SEQADV 8PQF PRO C 756 UNP P10721 LINKER SEQADV 8PQF GLU C 757 UNP P10721 LINKER SEQADV 8PQF ASP C 758 UNP P10721 LINKER SEQADV 8PQF LEU C 759 UNP P10721 LINKER SEQADV 8PQF TYR C 760 UNP P10721 LINKER SEQADV 8PQF LYS C 761 UNP P10721 LINKER SEQADV 8PQF ASP C 762 UNP P10721 LINKER SEQADV 8PQF PHE C 763 UNP P10721 LINKER SEQADV 8PQF LEU C 764 UNP P10721 LINKER SEQADV 8PQF THR C 765 UNP P10721 LINKER SEQADV 8PQF HIS C 768 UNP P10721 ASP 768 ENGINEERED MUTATION SEQADV 8PQF ASN C 804 UNP P10721 ARG 804 ENGINEERED MUTATION SEQADV 8PQF ASP C 825 UNP P10721 VAL 825 ENGINEERED MUTATION SEQADV 8PQF SER C 844 UNP P10721 CYS 844 ENGINEERED MUTATION SEQADV 8PQF SER C 890 UNP P10721 LEU 890 ENGINEERED MUTATION SEQADV 8PQF TYR C 894 UNP P10721 HIS 894 ENGINEERED MUTATION SEQADV 8PQF ASP C 912 UNP P10721 LEU 912 ENGINEERED MUTATION SEQADV 8PQF ASP C 923 UNP P10721 LEU 923 ENGINEERED MUTATION SEQRES 1 A 327 GLY SER MET PRO MET TYR GLU VAL GLN TRP LYS VAL VAL SEQRES 2 A 327 GLU GLU SER ASN GLY ASN ASN TYR SER TYR ILE ASP PRO SEQRES 3 A 327 THR GLN LEU PRO TYR ASP HIS LYS TRP GLU PHE PRO ARG SEQRES 4 A 327 ASN ARG LEU SER PHE GLY LYS THR LEU GLY ALA GLY ALA SEQRES 5 A 327 PHE GLY LYS VAL VAL GLU ALA THR ALA GLN GLY LEU ILE SEQRES 6 A 327 LYS SER ASP ALA ALA MET THR VAL ALA VAL LYS MET LEU SEQRES 7 A 327 LYS PRO SER ALA HIS SER THR GLU ARG GLU ALA LEU MET SEQRES 8 A 327 SER GLU LEU LYS VAL LEU SER TYR LEU GLY ASN HIS GLU SEQRES 9 A 327 ASN ILE VAL ASN LEU LEU GLY ALA CYS THR HIS GLY GLY SEQRES 10 A 327 PRO THR LEU VAL ILE THR GLU TYR CYS CYS TYR GLY ASP SEQRES 11 A 327 LEU LEU ASN PHE LEU ARG ARG LYS ARG ASP GLU PHE VAL SEQRES 12 A 327 PRO TYR LYS VAL ALA PRO GLU ASP LEU TYR LYS ASP PHE SEQRES 13 A 327 LEU THR LEU GLU HIS LEU LEU SER PHE SER TYR GLN VAL SEQRES 14 A 327 ALA LYS GLY MET ALA PHE LEU ALA SER LYS ASN CYS ILE SEQRES 15 A 327 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU LEU THR HIS SEQRES 16 A 327 GLY ASN ILE THR LYS ILE CYS ASP PHE GLY LEU ALA ARG SEQRES 17 A 327 ASP ILE LYS ASN ASP SER ASN TYR VAL ASP LYS GLY ASN SEQRES 18 A 327 ALA ARG LEU PRO VAL LYS TRP MET ALA PRO GLU SER ILE SEQRES 19 A 327 PHE ASN SER VAL TYR THR PHE GLU SER ASP VAL TRP SER SEQRES 20 A 327 TYR GLY ILE PHE LEU TRP GLU LEU PHE SER LEU GLY SER SEQRES 21 A 327 SER PRO TYR PRO GLY MET PRO VAL ASP SER LYS PHE TYR SEQRES 22 A 327 LYS MET ILE LYS GLU GLY PHE ARG MET SER SER PRO GLU SEQRES 23 A 327 TYR ALA PRO ALA GLU MET TYR ASP ILE MET LYS THR CYS SEQRES 24 A 327 TRP ASP ALA ASP PRO ASP LYS ARG PRO THR PHE LYS GLN SEQRES 25 A 327 ILE VAL GLN ASP ILE GLU LYS GLN ILE SER GLU SER THR SEQRES 26 A 327 ASN HIS SEQRES 1 C 327 GLY SER MET PRO MET TYR GLU VAL GLN TRP LYS VAL VAL SEQRES 2 C 327 GLU GLU SER ASN GLY ASN ASN TYR SER TYR ILE ASP PRO SEQRES 3 C 327 THR GLN LEU PRO TYR ASP HIS LYS TRP GLU PHE PRO ARG SEQRES 4 C 327 ASN ARG LEU SER PHE GLY LYS THR LEU GLY ALA GLY ALA SEQRES 5 C 327 PHE GLY LYS VAL VAL GLU ALA THR ALA GLN GLY LEU ILE SEQRES 6 C 327 LYS SER ASP ALA ALA MET THR VAL ALA VAL LYS MET LEU SEQRES 7 C 327 LYS PRO SER ALA HIS SER THR GLU ARG GLU ALA LEU MET SEQRES 8 C 327 SER GLU LEU LYS VAL LEU SER TYR LEU GLY ASN HIS GLU SEQRES 9 C 327 ASN ILE VAL ASN LEU LEU GLY ALA CYS THR HIS GLY GLY SEQRES 10 C 327 PRO THR LEU VAL ILE THR GLU TYR CYS CYS TYR GLY ASP SEQRES 11 C 327 LEU LEU ASN PHE LEU ARG ARG LYS ARG ASP GLU PHE VAL SEQRES 12 C 327 PRO TYR LYS VAL ALA PRO GLU ASP LEU TYR LYS ASP PHE SEQRES 13 C 327 LEU THR LEU GLU HIS LEU LEU SER PHE SER TYR GLN VAL SEQRES 14 C 327 ALA LYS GLY MET ALA PHE LEU ALA SER LYS ASN CYS ILE SEQRES 15 C 327 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU LEU THR HIS SEQRES 16 C 327 GLY ASN ILE THR LYS ILE CYS ASP PHE GLY LEU ALA ARG SEQRES 17 C 327 ASP ILE LYS ASN ASP SER ASN TYR VAL ASP LYS GLY ASN SEQRES 18 C 327 ALA ARG LEU PRO VAL LYS TRP MET ALA PRO GLU SER ILE SEQRES 19 C 327 PHE ASN SER VAL TYR THR PHE GLU SER ASP VAL TRP SER SEQRES 20 C 327 TYR GLY ILE PHE LEU TRP GLU LEU PHE SER LEU GLY SER SEQRES 21 C 327 SER PRO TYR PRO GLY MET PRO VAL ASP SER LYS PHE TYR SEQRES 22 C 327 LYS MET ILE LYS GLU GLY PHE ARG MET SER SER PRO GLU SEQRES 23 C 327 TYR ALA PRO ALA GLU MET TYR ASP ILE MET LYS THR CYS SEQRES 24 C 327 TRP ASP ALA ASP PRO ASP LYS ARG PRO THR PHE LYS GLN SEQRES 25 C 327 ILE VAL GLN ASP ILE GLU LYS GLN ILE SER GLU SER THR SEQRES 26 C 327 ASN HIS HET 9KI A1001 41 HET 9KI C1001 41 HETNAM 9KI METHYL ~{N}-[(1~{S})-1-(4-FLUOROPHENYL)-1-[2-[4-[6-(1- HETNAM 2 9KI METHYLPYRAZOL-4-YL)PYRROLO[2,1-F][1,2,4]TRIAZIN-4- HETNAM 3 9KI YL]PIPERAZIN-1-YL]PYRIMIDIN-5-YL]ETHYL]CARBAMATE FORMUL 3 9KI 2(C28 H29 F N10 O2) FORMUL 5 HOH *284(H2 O) HELIX 1 AA1 ASP A 572 LEU A 576 5 5 HELIX 2 AA2 ASP A 579 GLU A 583 5 5 HELIX 3 AA3 PRO A 585 ASN A 587 5 3 HELIX 4 AA4 HIS A 630 GLY A 648 1 19 HELIX 5 AA5 ASP A 677 ARG A 686 1 10 HELIX 6 AA6 THR A 765 LYS A 786 1 22 HELIX 7 AA7 ALA A 794 ARG A 796 5 3 HELIX 8 AA8 PRO A 832 MET A 836 5 5 HELIX 9 AA9 ALA A 837 SER A 844 1 8 HELIX 10 AB1 THR A 847 SER A 864 1 18 HELIX 11 AB2 ASP A 876 GLU A 885 1 10 HELIX 12 AB3 PRO A 896 TRP A 907 1 12 HELIX 13 AB4 ASP A 910 ARG A 914 5 5 HELIX 14 AB5 THR A 916 GLU A 930 1 15 HELIX 15 AB6 ASP C 572 LEU C 576 5 5 HELIX 16 AB7 ASP C 579 GLU C 583 5 5 HELIX 17 AB8 PRO C 585 ASN C 587 5 3 HELIX 18 AB9 HIS C 630 GLY C 648 1 19 HELIX 19 AC1 ASP C 677 ARG C 686 1 10 HELIX 20 AC2 THR C 765 LYS C 786 1 22 HELIX 21 AC3 ALA C 794 ARG C 796 5 3 HELIX 22 AC4 HIS C 802 ASN C 804 5 3 HELIX 23 AC5 PRO C 832 MET C 836 5 5 HELIX 24 AC6 ALA C 837 SER C 844 1 8 HELIX 25 AC7 THR C 847 SER C 864 1 18 HELIX 26 AC8 ASP C 876 GLY C 886 1 11 HELIX 27 AC9 PRO C 896 TRP C 907 1 12 HELIX 28 AD1 ASP C 910 ARG C 914 5 5 HELIX 29 AD2 THR C 916 THR C 932 1 17 SHEET 1 AA1 5 LEU A 589 ALA A 597 0 SHEET 2 AA1 5 GLY A 601 GLN A 609 -1 O GLU A 605 N GLY A 592 SHEET 3 AA1 5 ALA A 617 LEU A 625 -1 O MET A 618 N ALA A 608 SHEET 4 AA1 5 LEU A 667 GLU A 671 -1 O VAL A 668 N LYS A 623 SHEET 5 AA1 5 LEU A 656 CYS A 660 -1 N LEU A 657 O ILE A 669 SHEET 1 AA2 2 CYS A 788 ILE A 789 0 SHEET 2 AA2 2 ARG A 815 ASP A 816 -1 O ARG A 815 N ILE A 789 SHEET 1 AA3 2 ILE A 798 THR A 801 0 SHEET 2 AA3 2 ILE A 805 ILE A 808 -1 O LYS A 807 N LEU A 799 SHEET 1 AA4 2 TYR A 823 VAL A 824 0 SHEET 2 AA4 2 VAL A 845 TYR A 846 -1 O TYR A 846 N TYR A 823 SHEET 1 AA5 5 LEU C 589 ALA C 597 0 SHEET 2 AA5 5 GLY C 601 GLN C 609 -1 O GLU C 605 N GLY C 592 SHEET 3 AA5 5 ALA C 617 LEU C 625 -1 O VAL C 620 N ALA C 606 SHEET 4 AA5 5 LEU C 667 GLU C 671 -1 O THR C 670 N ALA C 621 SHEET 5 AA5 5 LEU C 656 CYS C 660 -1 N LEU C 657 O ILE C 669 SHEET 1 AA6 2 CYS C 788 ILE C 789 0 SHEET 2 AA6 2 ARG C 815 ASP C 816 -1 O ARG C 815 N ILE C 789 SHEET 1 AA7 2 ILE C 798 THR C 801 0 SHEET 2 AA7 2 ILE C 805 ILE C 808 -1 O LYS C 807 N LEU C 799 SHEET 1 AA8 2 TYR C 823 VAL C 824 0 SHEET 2 AA8 2 VAL C 845 TYR C 846 -1 O TYR C 846 N TYR C 823 CRYST1 58.090 59.250 191.830 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017215 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005213 0.00000