HEADER TRANSFERASE 11-JUL-23 8PQJ TITLE PDGFRA WILD-TYPE KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET-DERIVED GROWTH FACTOR RECEPTOR ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PDGF-R-ALPHA,PDGFR-ALPHA,ALPHA PLATELET-DERIVED GROWTH COMPND 5 FACTOR RECEPTOR,ALPHA-TYPE PLATELET-DERIVED GROWTH FACTOR RECEPTOR, COMPND 6 CD140 ANTIGEN-LIKE FAMILY MEMBER A,CD140A ANTIGEN,PLATELET-DERIVED COMPND 7 GROWTH FACTOR ALPHA RECEPTOR,PLATELET-DERIVED GROWTH FACTOR RECEPTOR COMPND 8 2,PDGFR-2; COMPND 9 EC: 2.7.10.1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDGFRA, PDGFR2, RHEPDGFRA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PDGFRA PROTEIN KINASE, AVAPRITINIB, INHIBITOR, TYROSINE KINASE, KEYWDS 2 TRANSMEMBRANE RECEPTOR, PLATELET-DERIVED GROWTH FACTOR RECEPTOR KEYWDS 3 ALPHA, PDGF, PLATELET-DERIVED GROWTH FACTOR, GIST, GASTROINTESTINAL KEYWDS 4 STROMAL TUMORS, P16234, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TEUBER,M.P.MUELLER,D.RAUH REVDAT 3 13-MAR-24 8PQJ 1 REMARK REVDAT 2 17-JAN-24 8PQJ 1 JRNL REVDAT 1 27-DEC-23 8PQJ 0 JRNL AUTH A.TEUBER,T.SCHULZ,B.S.FLETCHER,R.GONTLA,T.MUHLENBERG, JRNL AUTH 2 M.L.ZISCHINSKY,J.NIGGENABER,J.WEISNER,S.B.KLEINBOLTING, JRNL AUTH 3 J.LATEGAHN,S.SIEVERS,M.P.MULLER,S.BAUER,D.RAUH JRNL TITL AVAPRITINIB-BASED SAR STUDIES UNVEIL A BINDING POCKET IN KIT JRNL TITL 2 AND PDGFRA. JRNL REF NAT COMMUN V. 15 63 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38167404 JRNL DOI 10.1038/S41467-023-44376-8 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8400 - 4.0500 1.00 2850 150 0.1496 0.1704 REMARK 3 2 4.0500 - 3.2100 1.00 2775 146 0.1598 0.1878 REMARK 3 3 3.2100 - 2.8100 1.00 2784 146 0.1960 0.2468 REMARK 3 4 2.8100 - 2.5500 1.00 2754 145 0.2130 0.2348 REMARK 3 5 2.5500 - 2.3700 1.00 2765 146 0.2016 0.2631 REMARK 3 6 2.3700 - 2.2300 1.00 2745 144 0.1815 0.2102 REMARK 3 7 2.2300 - 2.1200 1.00 2765 146 0.1817 0.2266 REMARK 3 8 2.1200 - 2.0200 1.00 2730 144 0.2224 0.2563 REMARK 3 9 2.0200 - 1.9500 1.00 2736 144 0.2380 0.2680 REMARK 3 10 1.9500 - 1.8800 1.00 2742 143 0.2813 0.3117 REMARK 3 11 1.8800 - 1.8200 1.00 2753 145 0.4402 0.4581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2702 REMARK 3 ANGLE : 0.776 3666 REMARK 3 CHIRALITY : 0.053 405 REMARK 3 PLANARITY : 0.006 458 REMARK 3 DIHEDRAL : 5.040 368 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 553 THROUGH 579 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0515 13.6106 24.9329 REMARK 3 T TENSOR REMARK 3 T11: 0.3545 T22: 0.3837 REMARK 3 T33: 0.5610 T12: -0.0068 REMARK 3 T13: -0.0491 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 2.6722 L22: 4.2271 REMARK 3 L33: 4.8181 L12: 1.5330 REMARK 3 L13: 1.3296 L23: 0.2312 REMARK 3 S TENSOR REMARK 3 S11: -0.1297 S12: 0.2509 S13: 0.6157 REMARK 3 S21: -0.1515 S22: -0.0243 S23: -0.8635 REMARK 3 S31: -0.2304 S32: 0.7793 S33: 0.0399 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 580 THROUGH 604 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0400 -5.5325 29.0165 REMARK 3 T TENSOR REMARK 3 T11: 0.2424 T22: 0.2147 REMARK 3 T33: 0.2935 T12: 0.1076 REMARK 3 T13: -0.0260 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 3.2335 L22: 3.4203 REMARK 3 L33: 2.9605 L12: 2.8486 REMARK 3 L13: -0.1930 L23: -0.1286 REMARK 3 S TENSOR REMARK 3 S11: 0.1112 S12: -0.2445 S13: -0.1790 REMARK 3 S21: 0.2872 S22: -0.2177 S23: -0.1766 REMARK 3 S31: 0.1053 S32: 0.0864 S33: 0.0462 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 605 THROUGH 634 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1021 -7.5905 27.1198 REMARK 3 T TENSOR REMARK 3 T11: 0.2350 T22: 0.1882 REMARK 3 T33: 0.2622 T12: 0.0324 REMARK 3 T13: -0.0157 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 2.4228 L22: 2.6601 REMARK 3 L33: 3.9747 L12: 0.8310 REMARK 3 L13: -1.1460 L23: -0.1215 REMARK 3 S TENSOR REMARK 3 S11: -0.0758 S12: 0.0766 S13: 0.0527 REMARK 3 S21: 0.0732 S22: 0.1230 S23: 0.1142 REMARK 3 S31: 0.1825 S32: -0.1457 S33: 0.0989 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 635 THROUGH 651 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9186 4.3806 28.3704 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.3165 REMARK 3 T33: 0.2933 T12: -0.0019 REMARK 3 T13: -0.0624 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 5.9367 L22: 5.1907 REMARK 3 L33: 6.3136 L12: -2.5228 REMARK 3 L13: -3.8558 L23: 2.5420 REMARK 3 S TENSOR REMARK 3 S11: 0.1615 S12: -0.4164 S13: -0.1977 REMARK 3 S21: -0.1314 S22: -0.0098 S23: -0.2979 REMARK 3 S31: -0.1316 S32: 0.3699 S33: -0.0697 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 652 THROUGH 889 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0675 8.9013 16.8342 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.2229 REMARK 3 T33: 0.2324 T12: 0.0162 REMARK 3 T13: -0.0289 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.1032 L22: 2.0260 REMARK 3 L33: 1.9941 L12: -0.6439 REMARK 3 L13: -0.1588 L23: -0.3874 REMARK 3 S TENSOR REMARK 3 S11: 0.0777 S12: 0.0488 S13: -0.0097 REMARK 3 S21: -0.1362 S22: -0.0815 S23: 0.0412 REMARK 3 S31: -0.0191 S32: -0.0231 S33: 0.0029 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 890 THROUGH 922 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8201 18.8066 0.8563 REMARK 3 T TENSOR REMARK 3 T11: 0.5361 T22: 0.3224 REMARK 3 T33: 0.2488 T12: 0.0708 REMARK 3 T13: -0.0361 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 4.9401 L22: 4.4777 REMARK 3 L33: 5.2603 L12: 3.2822 REMARK 3 L13: -5.0186 L23: -2.8358 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: 0.2537 S13: -0.0455 REMARK 3 S21: -0.5387 S22: -0.0960 S23: -0.1027 REMARK 3 S31: -0.1648 S32: -0.2228 S33: 0.0096 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 923 THROUGH 973 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8521 19.6796 21.2289 REMARK 3 T TENSOR REMARK 3 T11: 0.2438 T22: 0.2324 REMARK 3 T33: 0.2616 T12: 0.0681 REMARK 3 T13: -0.0120 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 2.5071 L22: 4.4333 REMARK 3 L33: 4.9316 L12: 1.9576 REMARK 3 L13: -2.0823 L23: -2.9426 REMARK 3 S TENSOR REMARK 3 S11: 0.0997 S12: -0.0448 S13: 0.2550 REMARK 3 S21: 0.0641 S22: 0.0767 S23: 0.3776 REMARK 3 S31: -0.2753 S32: -0.2622 S33: -0.1956 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292130411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9998 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32011 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 47.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.840 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.52 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML, 15% PEG3350, 100 MM BIS-TRIS REMARK 280 -PROPANE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 285.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.19000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.19000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1159 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 550 REMARK 465 GLN A 551 REMARK 465 LYS A 552 REMARK 465 PRO A 567 REMARK 465 ASP A 568 REMARK 465 GLY A 569 REMARK 465 HIS A 570 REMARK 465 GLU A 571 REMARK 465 TYR A 572 REMARK 465 LEU A 766 REMARK 465 SER A 767 REMARK 465 HIS A 768 REMARK 465 LYS A 769 REMARK 465 LYS A 770 REMARK 465 LYS A 771 REMARK 465 SER A 772 REMARK 465 MET A 773 REMARK 465 LEU A 774 REMARK 465 ASP A 775 REMARK 465 ASN A 786 REMARK 465 SER A 787 REMARK 465 GLU A 788 REMARK 465 GLY A 789 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 566 OG REMARK 470 ILE A 573 CG1 CG2 CD1 REMARK 470 ARG A 585 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 666 CG CD CE NZ REMARK 470 SER A 667 OG REMARK 470 SER A 776 OG REMARK 470 GLU A 777 CG CD OE1 OE2 REMARK 470 ASN A 780 CG OD1 ND2 REMARK 470 ASP A 785 CG OD1 OD2 REMARK 470 MET A 900 CG SD CE REMARK 470 ASP A 973 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 818 41.00 -150.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PQJ A 550 768 UNP P16234 PGFRA_HUMAN 550 696 DBREF 8PQJ A 769 973 UNP P16234 PGFRA_HUMAN 769 973 SEQRES 1 A 352 LYS GLN LYS PRO ARG TYR GLU ILE ARG TRP ARG VAL ILE SEQRES 2 A 352 GLU SER ILE SER PRO ASP GLY HIS GLU TYR ILE TYR VAL SEQRES 3 A 352 ASP PRO MET GLN LEU PRO TYR ASP SER ARG TRP GLU PHE SEQRES 4 A 352 PRO ARG ASP GLY LEU VAL LEU GLY ARG VAL LEU GLY SER SEQRES 5 A 352 GLY ALA PHE GLY LYS VAL VAL GLU GLY THR ALA TYR GLY SEQRES 6 A 352 LEU SER ARG SER GLN PRO VAL MET LYS VAL ALA VAL LYS SEQRES 7 A 352 MET LEU LYS PRO THR ALA ARG SER SER GLU LYS GLN ALA SEQRES 8 A 352 LEU MET SER GLU LEU LYS ILE MET THR HIS LEU GLY PRO SEQRES 9 A 352 HIS LEU ASN ILE VAL ASN LEU LEU GLY ALA CYS THR LYS SEQRES 10 A 352 SER GLY PRO ILE TYR ILE ILE THR GLU TYR CYS PHE TYR SEQRES 11 A 352 GLY ASP LEU VAL ASN TYR LEU HIS LYS ASN ARG ASP SER SEQRES 12 A 352 PHE LEU SER HIS LYS LYS LYS SER MET LEU ASP SER GLU SEQRES 13 A 352 VAL LYS ASN LEU LEU SER ASP ASP ASN SER GLU GLY LEU SEQRES 14 A 352 THR LEU LEU ASP LEU LEU SER PHE THR TYR GLN VAL ALA SEQRES 15 A 352 ARG GLY MET GLU PHE LEU ALA SER LYS ASN CYS VAL HIS SEQRES 16 A 352 ARG ASP LEU ALA ALA ARG ASN VAL LEU LEU ALA GLN GLY SEQRES 17 A 352 LYS ILE VAL LYS ILE CYS ASP PHE GLY LEU ALA ARG ASP SEQRES 18 A 352 ILE MET HIS ASP SER ASN TYR VAL SER LYS GLY SER THR SEQRES 19 A 352 PHE LEU PRO VAL LYS TRP MET ALA PRO GLU SER ILE PHE SEQRES 20 A 352 ASP ASN LEU TYR THR THR LEU SER ASP VAL TRP SER TYR SEQRES 21 A 352 GLY ILE LEU LEU TRP GLU ILE PHE SER LEU GLY GLY THR SEQRES 22 A 352 PRO TYR PRO GLY MET MET VAL ASP SER THR PHE TYR ASN SEQRES 23 A 352 LYS ILE LYS SER GLY TYR ARG MET ALA LYS PRO ASP HIS SEQRES 24 A 352 ALA THR SER GLU VAL TYR GLU ILE MET VAL LYS CYS TRP SEQRES 25 A 352 ASN SER GLU PRO GLU LYS ARG PRO SER PHE TYR HIS LEU SEQRES 26 A 352 SER GLU ILE VAL GLU ASN LEU LEU PRO GLY GLN TYR LYS SEQRES 27 A 352 LYS SER TYR GLU LYS ILE HIS LEU ASP PHE LEU LYS SER SEQRES 28 A 352 ASP FORMUL 2 HOH *204(H2 O) HELIX 1 AA1 ASP A 576 LEU A 580 5 5 HELIX 2 AA2 ASP A 583 GLU A 587 5 5 HELIX 3 AA3 PRO A 589 ASP A 591 5 3 HELIX 4 AA4 ARG A 634 GLY A 652 1 19 HELIX 5 AA5 LEU A 682 ARG A 690 1 9 HELIX 6 AA6 ASP A 691 PHE A 693 5 3 HELIX 7 AA7 THR A 791 LYS A 812 1 22 HELIX 8 AA8 ALA A 820 ARG A 822 5 3 HELIX 9 AA9 PHE A 837 ARG A 841 5 5 HELIX 10 AB1 ASP A 842 ASP A 846 5 5 HELIX 11 AB2 PRO A 858 MET A 862 5 5 HELIX 12 AB3 ALA A 863 ASN A 870 1 8 HELIX 13 AB4 THR A 873 SER A 890 1 18 HELIX 14 AB5 ASP A 902 SER A 911 1 10 HELIX 15 AB6 THR A 922 TRP A 933 1 12 HELIX 16 AB7 GLU A 936 ARG A 940 5 5 HELIX 17 AB8 SER A 942 ASN A 952 1 11 HELIX 18 AB9 PRO A 955 SER A 972 1 18 SHEET 1 AA1 2 ARG A 560 VAL A 561 0 SHEET 2 AA1 2 CYS A 814 VAL A 815 -1 O VAL A 815 N ARG A 560 SHEET 1 AA2 5 LEU A 593 SER A 601 0 SHEET 2 AA2 5 GLY A 605 TYR A 613 -1 O GLU A 609 N GLY A 596 SHEET 3 AA2 5 VAL A 621 LEU A 629 -1 O MET A 622 N ALA A 612 SHEET 4 AA2 5 TYR A 671 GLU A 675 -1 O THR A 674 N ALA A 625 SHEET 5 AA2 5 LEU A 660 CYS A 664 -1 N LEU A 661 O ILE A 673 SHEET 1 AA3 3 GLY A 680 ASP A 681 0 SHEET 2 AA3 3 VAL A 824 ALA A 827 -1 O LEU A 826 N GLY A 680 SHEET 3 AA3 3 ILE A 831 ILE A 834 -1 O ILE A 831 N ALA A 827 SHEET 1 AA4 2 VAL A 850 LYS A 852 0 SHEET 2 AA4 2 THR A 855 LEU A 857 -1 O LEU A 857 N VAL A 850 CRYST1 96.380 49.180 77.040 90.00 100.78 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010376 0.000000 0.001975 0.00000 SCALE2 0.000000 0.020333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013213 0.00000