HEADER MOTOR PROTEIN 12-JUL-23 8PQU TITLE NMR STRUCTURE OF THE THERMUS THERMOPHILUS PILF-GSPIIB DOMAIN IN THE TITLE 2 APO STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-BINDING MOTIF-CONTAINING PROTEIN PILF; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-DI-GMP BINDING DOMAIN OF THE ATPASE ENZYME PILF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 GENE: PILF, TT_C1622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PILT CLASS, GSPII, LIGAND BINDING, C-DI-GMP, MOTOR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.NEISSNER,J.WOEHNERT REVDAT 1 24-JUL-24 8PQU 0 JRNL AUTH K.NEISSNER,J.WOEHNERT JRNL TITL NMR STRUCTURE OF THE THERMUS THERMOPHILUS PILF-GSPIIB DOMAIN JRNL TITL 2 IN THE APO STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292131295. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 200 MM NACL REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 500 UM [U-13C; U-15N] PILF159 REMARK 210 -302, 90% H2O/10% D2O; 550 UM [U-100% 15N] PILF159-302, 90% H2O/ REMARK 210 10% D2O; 510 UM [U-15N]-LEU/VAL-13C PILF159-302, 90% H2O/10% D2O; REMARK 210 490 UM [U-15N]-LEU/VAL-13C-STEREOSPECIFIC PILF159-302, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY; 3D HNCACB; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HN(CO)CA; 3D HN(CA) REMARK 210 CO; 3D HCCH-TOCSY; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 3D HBHA(CO)NH; 2D REMARK 210 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD; AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 3.98.13, TOPSPIN, CCPNMR REMARK 210 ANALYSIS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ARG A 282 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 5 ARG A 180 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 8 ARG A 282 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 18 ARG A 296 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 161 -70.33 -142.06 REMARK 500 1 ASN A 278 28.53 49.63 REMARK 500 1 TYR A 299 70.99 -119.21 REMARK 500 2 GLU A 161 -88.73 -143.07 REMARK 500 2 ASP A 195 -166.56 -77.81 REMARK 500 2 GLU A 228 -9.44 -49.95 REMARK 500 2 TYR A 299 79.76 -115.05 REMARK 500 3 SER A 158 80.81 70.26 REMARK 500 4 GLN A 163 -45.02 -144.74 REMARK 500 4 ASN A 278 25.21 44.88 REMARK 500 4 TYR A 299 69.15 -119.11 REMARK 500 5 SER A 158 5.09 48.91 REMARK 500 5 LYS A 164 12.11 86.69 REMARK 500 5 PRO A 267 5.37 -58.77 REMARK 500 6 GLN A 163 -28.47 -150.46 REMARK 500 6 PRO A 267 1.99 -62.44 REMARK 500 7 SER A 158 -118.83 -122.45 REMARK 500 7 SER A 159 99.16 -161.88 REMARK 500 7 GLN A 163 -56.78 -156.85 REMARK 500 8 SER A 159 -178.34 -62.35 REMARK 500 8 LYS A 164 1.18 92.17 REMARK 500 8 PRO A 267 7.40 -68.45 REMARK 500 8 PRO A 300 -166.65 -77.20 REMARK 500 9 SER A 159 -156.80 -143.10 REMARK 500 9 ASP A 195 -149.77 -83.10 REMARK 500 10 GLU A 161 62.08 32.75 REMARK 500 10 ASP A 195 -110.63 -69.53 REMARK 500 10 PRO A 267 8.81 -63.39 REMARK 500 10 PRO A 280 107.79 -57.90 REMARK 500 10 TYR A 299 61.84 -119.71 REMARK 500 11 GLU A 161 65.95 61.45 REMARK 500 11 GLN A 163 60.36 63.18 REMARK 500 11 LYS A 164 -54.59 -134.15 REMARK 500 11 GLU A 228 62.23 -67.44 REMARK 500 11 ASN A 278 44.23 39.46 REMARK 500 11 TYR A 299 74.87 -116.28 REMARK 500 12 SER A 226 -177.24 -170.25 REMARK 500 12 PRO A 267 4.11 -57.27 REMARK 500 12 ASN A 278 46.71 39.18 REMARK 500 12 TYR A 299 69.53 -119.03 REMARK 500 13 SER A 158 -59.52 -160.39 REMARK 500 13 PRO A 267 5.63 -69.23 REMARK 500 13 ASN A 278 49.23 38.65 REMARK 500 14 THR A 227 -33.48 -131.61 REMARK 500 14 GLU A 228 81.92 -68.55 REMARK 500 14 PRO A 267 3.75 -67.23 REMARK 500 14 ASN A 278 19.20 49.86 REMARK 500 14 TYR A 299 75.53 -116.80 REMARK 500 15 GLN A 163 -24.48 -147.28 REMARK 500 16 SER A 158 -62.85 -153.02 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 268 0.09 SIDE CHAIN REMARK 500 1 ARG A 279 0.15 SIDE CHAIN REMARK 500 1 ARG A 282 0.18 SIDE CHAIN REMARK 500 2 ARG A 199 0.10 SIDE CHAIN REMARK 500 2 TYR A 212 0.10 SIDE CHAIN REMARK 500 2 ARG A 247 0.11 SIDE CHAIN REMARK 500 4 ARG A 203 0.10 SIDE CHAIN REMARK 500 5 TYR A 248 0.08 SIDE CHAIN REMARK 500 5 ARG A 282 0.09 SIDE CHAIN REMARK 500 6 ARG A 180 0.15 SIDE CHAIN REMARK 500 8 ARG A 199 0.14 SIDE CHAIN REMARK 500 8 ARG A 296 0.09 SIDE CHAIN REMARK 500 8 ARG A 297 0.08 SIDE CHAIN REMARK 500 9 ARG A 247 0.09 SIDE CHAIN REMARK 500 10 ARG A 199 0.08 SIDE CHAIN REMARK 500 12 TYR A 212 0.09 SIDE CHAIN REMARK 500 13 ARG A 199 0.09 SIDE CHAIN REMARK 500 13 ARG A 247 0.10 SIDE CHAIN REMARK 500 14 ARG A 180 0.09 SIDE CHAIN REMARK 500 15 TYR A 212 0.09 SIDE CHAIN REMARK 500 15 TYR A 299 0.07 SIDE CHAIN REMARK 500 16 ARG A 282 0.09 SIDE CHAIN REMARK 500 16 ARG A 297 0.08 SIDE CHAIN REMARK 500 17 TYR A 212 0.09 SIDE CHAIN REMARK 500 20 ARG A 199 0.14 SIDE CHAIN REMARK 500 20 ARG A 282 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27852 RELATED DB: BMRB DBREF 8PQU A 157 302 UNP Q72H73 Q72H73_THET2 157 302 SEQADV 8PQU GLY A 157 UNP Q72H73 PRO 157 ENGINEERED MUTATION SEQADV 8PQU SER A 158 UNP Q72H73 PRO 158 ENGINEERED MUTATION SEQRES 1 A 146 GLY SER SER GLY GLU GLY GLN LYS ASP LEU LYS LEU GLY SEQRES 2 A 146 GLU LEU LEU LEU GLN LYS GLY TRP ILE SER ARG GLU ALA SEQRES 3 A 146 LEU GLU GLU ALA LEU VAL GLU GLN GLU LYS THR GLY ASP SEQRES 4 A 146 LEU LEU GLY ARG ILE LEU VAL ARG LYS GLY LEU PRO GLU SEQRES 5 A 146 GLU ALA LEU TYR ARG ALA LEU ALA GLU GLN LYS GLY LEU SEQRES 6 A 146 GLU PHE LEU GLU SER THR GLU GLY ILE VAL PRO ASP PRO SEQRES 7 A 146 SER ALA ALA LEU LEU LEU LEU ARG SER ASP ALA LEU ARG SEQRES 8 A 146 TYR GLY ALA VAL PRO ILE GLY PHE GLN ASN GLY GLU VAL SEQRES 9 A 146 GLU VAL VAL LEU SER ASP PRO ARG HIS LYS GLU ALA VAL SEQRES 10 A 146 ALA GLN LEU LEU ASN ARG PRO ALA ARG PHE TYR LEU ALA SEQRES 11 A 146 LEU PRO GLN ALA TRP GLU GLU LEU PHE ARG ARG ALA TYR SEQRES 12 A 146 PRO GLN LYS HELIX 1 AA1 GLN A 163 GLY A 176 1 14 HELIX 2 AA2 SER A 179 GLY A 194 1 16 HELIX 3 AA3 LEU A 196 LYS A 204 1 9 HELIX 4 AA4 GLU A 208 GLY A 220 1 13 HELIX 5 AA5 PRO A 234 LEU A 239 5 6 HELIX 6 AA6 LEU A 241 GLY A 249 1 9 HELIX 7 AA7 ASP A 266 ARG A 268 5 3 HELIX 8 AA8 HIS A 269 ASN A 278 1 10 HELIX 9 AA9 LEU A 287 TYR A 299 1 13 SHEET 1 AA1 4 GLU A 222 PHE A 223 0 SHEET 2 AA1 4 ARG A 282 LEU A 285 1 O LEU A 285 N GLU A 222 SHEET 3 AA1 4 GLU A 259 LEU A 264 1 N VAL A 260 O ARG A 282 SHEET 4 AA1 4 ALA A 250 GLN A 256 -1 N VAL A 251 O VAL A 263 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1