data_8PSI # _entry.id 8PSI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8PSI pdb_00008psi 10.2210/pdb8psi/pdb WWPDB D_1292131826 ? ? BMRB 34835 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'G-quadruplex with a 1-nt V-shaped loop from a G-rich sequence with five G-runs' _pdbx_database_related.db_id 34835 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8PSI _pdbx_database_status.recvd_initial_deposition_date 2023-07-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vianney, Y.M.' 1 0000-0002-4576-9935 'Schroeder, N.' 2 ? 'Jana, J.' 3 ? 'Weisz, K.' 4 0000-0002-2736-6606 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 145 _citation.language ? _citation.page_first 22194 _citation.page_last 22205 _citation.title 'Showcasing Different G-Quadruplex Folds of a G-Rich Sequence: Between Rule-Based Prediction and Butterfly Effect.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.3c08336 _citation.pdbx_database_id_PubMed 37751488 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vianney, Y.M.' 1 ? primary 'Schroder, N.' 2 ? primary 'Jana, J.' 3 ? primary 'Chojetzki, G.' 4 ? primary 'Weisz, K.' 5 0000-0002-2736-6606 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3') ; _entity.formula_weight 6995.475 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DG)(DG)(DT)(DA)(DG)(DG)(DG)(DC)(DG)(DG)(DC)(DG)(DG)(DG)(DG)(DC)(DA)(DG)(DG) (DG)(DT) ; _entity_poly.pdbx_seq_one_letter_code_can GGGTAGGGCGGCGGGGCAGGGT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DG n 1 7 DG n 1 8 DG n 1 9 DC n 1 10 DG n 1 11 DG n 1 12 DC n 1 13 DG n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DC n 1 18 DA n 1 19 DG n 1 20 DG n 1 21 DG n 1 22 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8PSI _struct_ref.pdbx_db_accession 8PSI _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8PSI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8PSI _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-13C HSQC aromatic' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D 1H-15N HSQC' 1 isotropic 4 1 1 '2D DQF-COSY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details 'ODN3 1 mM, 10 mM potassium phosphate buffer pH 7.0, 303 K' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1 mM DNA, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label ODN3 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details 'ODN3 1 mM, 10 mM potassium phosphate buffer pH 7.0, 303 K' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE NEO' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 8PSI _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 3 # _pdbx_nmr_ensemble.entry_id 8PSI _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8PSI _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' 'CcpNmr Analysis' 2.4.2 CCPN 2 'structure calculation' Amber 18 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 refinement Amber 18 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 4 'data analysis' TopSpin 4.0.7 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8PSI _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8PSI _struct.title 'G-quadruplex with a 1-nt V-shaped loop from a G-rich sequence with five G-runs' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8PSI _struct_keywords.text 'G-quadruplex, V-shaped loop, antiparallel, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 7 N2 ? ? A DG 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 7 N1 ? ? A DG 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 1 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 1 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 2 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 2 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 13 N2 ? ? A DG 2 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 13 N1 ? ? A DG 2 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DA 5 N7 ? ? A DG 3 A DA 5 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 N3 ? ? ? 1_555 A DA 5 N6 ? ? A DG 3 A DA 5 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DT 22 O4 ? ? A DG 3 A DT 22 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 6 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 6 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 7 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 7 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 7 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 8 A DG 10 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 8 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 8 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 8 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 8 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 8 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 A DC 17 O2 ? ? A DC 9 A DC 17 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog22 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 11 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 11 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 13 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 13 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 13 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 13 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8PSI _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DC 12 12 12 DC DC A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DC 17 17 17 DC DC A . n A 1 18 DA 18 18 18 DA DA A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DT 22 22 22 DT DT A . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email weisz@uni-greifswald.de _pdbx_contact_author.name_first Klaus _pdbx_contact_author.name_last Weisz _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2736-6606 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-09-27 2 'Structure model' 1 1 2023-10-04 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.name' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 3 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component DNA _pdbx_nmr_exptl_sample.concentration 1 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.30 108.30 3.00 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.04 108.30 2.74 0.30 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.25 108.30 4.95 0.30 N 4 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.42 108.30 4.12 0.30 N 5 1 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.60 117.00 -3.40 0.50 N 6 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.51 117.70 3.81 0.50 N 7 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 112.32 118.60 -6.28 0.60 N 8 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 113.65 108.30 5.35 0.30 N 9 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.74 108.30 2.44 0.30 N 10 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.25 108.30 1.95 0.30 N 11 1 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 117.68 121.90 -4.22 0.70 N 12 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.23 108.30 1.93 0.30 N 13 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.58 108.30 2.28 0.30 N 14 1 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 110.22 108.30 1.92 0.30 N 15 1 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 117.18 121.90 -4.72 0.70 N 16 1 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 112.36 108.30 4.06 0.30 N 17 1 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.62 108.30 4.32 0.30 N 18 1 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.91 108.30 2.61 0.30 N 19 1 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 116.20 108.30 7.90 0.30 N 20 1 C4 A DA 18 ? ? C5 A DA 18 ? ? C6 A DA 18 ? ? 113.73 117.00 -3.27 0.50 N 21 1 C5 A DA 18 ? ? C6 A DA 18 ? ? N1 A DA 18 ? ? 121.36 117.70 3.66 0.50 N 22 1 N1 A DA 18 ? ? C6 A DA 18 ? ? N6 A DA 18 ? ? 113.21 118.60 -5.39 0.60 N 23 1 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 113.89 108.30 5.59 0.30 N 24 1 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.75 108.30 6.45 0.30 N 25 1 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.23 108.30 1.93 0.30 N 26 1 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.69 108.30 3.39 0.30 N 27 2 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.61 108.30 3.31 0.30 N 28 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.53 108.30 3.23 0.30 N 29 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.28 108.30 3.98 0.30 N 30 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.54 108.30 5.24 0.30 N 31 2 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.41 117.00 -3.59 0.50 N 32 2 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.61 117.70 3.91 0.50 N 33 2 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 111.59 118.60 -7.01 0.60 N 34 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.53 108.30 4.23 0.30 N 35 2 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.43 108.30 2.13 0.30 N 36 2 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.10 108.30 1.80 0.30 N 37 2 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 117.66 121.90 -4.24 0.70 N 38 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.49 108.30 2.19 0.30 N 39 2 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 117.25 121.90 -4.65 0.70 N 40 2 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 114.29 108.30 5.99 0.30 N 41 2 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.50 108.30 4.20 0.30 N 42 2 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.30 108.30 3.00 0.30 N 43 2 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.74 108.30 2.44 0.30 N 44 2 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 112.55 108.30 4.25 0.30 N 45 2 C4 A DA 18 ? ? C5 A DA 18 ? ? C6 A DA 18 ? ? 113.60 117.00 -3.40 0.50 N 46 2 C5 A DA 18 ? ? C6 A DA 18 ? ? N1 A DA 18 ? ? 121.50 117.70 3.80 0.50 N 47 2 N1 A DA 18 ? ? C6 A DA 18 ? ? N6 A DA 18 ? ? 112.96 118.60 -5.64 0.60 N 48 2 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.64 108.30 4.34 0.30 N 49 2 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.29 108.30 5.99 0.30 N 50 2 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.11 108.30 1.81 0.30 N 51 2 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.18 108.30 3.88 0.30 N 52 3 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.04 108.30 3.74 0.30 N 53 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.54 108.30 3.24 0.30 N 54 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.14 108.30 2.84 0.30 N 55 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.73 108.30 3.43 0.30 N 56 3 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.15 108.30 1.85 0.30 N 57 3 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.52 117.00 -3.48 0.50 N 58 3 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.64 117.70 3.94 0.50 N 59 3 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 111.55 118.60 -7.05 0.60 N 60 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.36 108.30 4.06 0.30 N 61 3 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.68 108.30 2.38 0.30 N 62 3 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.10 108.30 2.80 0.30 N 63 3 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 110.48 108.30 2.18 0.30 N 64 3 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 117.20 121.90 -4.70 0.70 N 65 3 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 113.42 108.30 5.12 0.30 N 66 3 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.53 108.30 4.23 0.30 N 67 3 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.04 108.30 2.74 0.30 N 68 3 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 111.13 108.30 2.83 0.30 N 69 3 "C3'" A DG 16 ? ? "O3'" A DG 16 ? ? P A DC 17 ? ? 127.04 119.70 7.34 1.20 Y 70 3 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 114.41 108.30 6.11 0.30 N 71 3 C4 A DA 18 ? ? C5 A DA 18 ? ? C6 A DA 18 ? ? 113.67 117.00 -3.33 0.50 N 72 3 C5 A DA 18 ? ? C6 A DA 18 ? ? N1 A DA 18 ? ? 121.43 117.70 3.73 0.50 N 73 3 N1 A DA 18 ? ? C6 A DA 18 ? ? N6 A DA 18 ? ? 113.04 118.60 -5.56 0.60 N 74 3 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 113.71 108.30 5.41 0.30 N 75 3 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.49 108.30 6.19 0.30 N 76 3 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.15 108.30 1.85 0.30 N 77 3 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.31 108.30 4.01 0.30 N 78 3 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.19 122.90 -3.71 0.60 N 79 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.95 108.30 2.65 0.30 N 80 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.73 108.30 3.43 0.30 N 81 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.01 108.30 4.71 0.30 N 82 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.33 108.30 5.03 0.30 N 83 4 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.57 117.00 -3.43 0.50 N 84 4 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.57 117.70 3.87 0.50 N 85 4 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 111.95 118.60 -6.65 0.60 N 86 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.59 108.30 4.29 0.30 N 87 4 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.27 108.30 2.97 0.30 N 88 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.78 108.30 2.48 0.30 N 89 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.26 108.30 3.96 0.30 N 90 4 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DG 11 ? ? 127.39 119.70 7.69 1.20 Y 91 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? "C2'" A DG 11 ? ? 100.89 105.90 -5.01 0.80 N 92 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.81 108.30 2.51 0.30 N 93 4 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 117.19 121.90 -4.71 0.70 N 94 4 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 113.97 108.30 5.67 0.30 N 95 4 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 113.17 108.30 4.87 0.30 N 96 4 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.04 108.30 2.74 0.30 N 97 4 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.56 108.30 2.26 0.30 N 98 4 "C3'" A DG 16 ? ? "O3'" A DG 16 ? ? P A DC 17 ? ? 128.19 119.70 8.49 1.20 Y 99 4 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 114.99 108.30 6.69 0.30 N 100 4 C4 A DA 18 ? ? C5 A DA 18 ? ? C6 A DA 18 ? ? 113.64 117.00 -3.36 0.50 N 101 4 C5 A DA 18 ? ? C6 A DA 18 ? ? N1 A DA 18 ? ? 121.39 117.70 3.69 0.50 N 102 4 N1 A DA 18 ? ? C6 A DA 18 ? ? N6 A DA 18 ? ? 113.00 118.60 -5.60 0.60 N 103 4 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 114.27 108.30 5.97 0.30 N 104 4 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.60 108.30 6.30 0.30 N 105 4 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.21 108.30 1.91 0.30 N 106 4 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.88 108.30 4.58 0.30 N 107 4 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.07 122.90 -3.83 0.60 N 108 5 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.16 108.30 2.86 0.30 N 109 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.80 108.30 2.50 0.30 N 110 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.38 108.30 5.08 0.30 N 111 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.69 108.30 4.39 0.30 N 112 5 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.60 117.00 -3.40 0.50 N 113 5 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.53 117.70 3.83 0.50 N 114 5 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 112.33 118.60 -6.27 0.60 N 115 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 113.66 108.30 5.36 0.30 N 116 5 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.00 108.30 2.70 0.30 N 117 5 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.32 108.30 2.02 0.30 N 118 5 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DG 11 ? ? 126.94 119.70 7.24 1.20 Y 119 5 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 117.16 121.90 -4.74 0.70 N 120 5 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 114.21 108.30 5.91 0.30 N 121 5 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 113.07 108.30 4.77 0.30 N 122 5 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.07 108.30 2.77 0.30 N 123 5 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 115.85 108.30 7.55 0.30 N 124 5 C4 A DA 18 ? ? C5 A DA 18 ? ? C6 A DA 18 ? ? 113.64 117.00 -3.36 0.50 N 125 5 C5 A DA 18 ? ? C6 A DA 18 ? ? N1 A DA 18 ? ? 121.39 117.70 3.69 0.50 N 126 5 N1 A DA 18 ? ? C6 A DA 18 ? ? N6 A DA 18 ? ? 113.05 118.60 -5.55 0.60 N 127 5 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 113.81 108.30 5.51 0.30 N 128 5 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.63 108.30 6.33 0.30 N 129 5 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.63 108.30 2.33 0.30 N 130 5 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.83 108.30 3.53 0.30 N 131 5 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.25 122.90 -3.65 0.60 N 132 6 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.77 108.30 3.47 0.30 N 133 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.18 108.30 3.88 0.30 N 134 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.26 108.30 4.96 0.30 N 135 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.97 108.30 5.67 0.30 N 136 6 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.48 117.00 -3.52 0.50 N 137 6 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.78 117.70 4.08 0.50 N 138 6 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 111.68 118.60 -6.92 0.60 N 139 6 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DG 6 ? ? 127.05 119.70 7.35 1.20 Y 140 6 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.69 108.30 3.39 0.30 N 141 6 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.55 108.30 2.25 0.30 N 142 6 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.91 108.30 2.61 0.30 N 143 6 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 117.69 121.90 -4.21 0.70 N 144 6 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 110.76 108.30 2.46 0.30 N 145 6 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 117.20 121.90 -4.70 0.70 N 146 6 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 113.88 108.30 5.58 0.30 N 147 6 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.21 108.30 3.91 0.30 N 148 6 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.07 108.30 2.77 0.30 N 149 6 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 113.11 108.30 4.81 0.30 N 150 6 C4 A DA 18 ? ? C5 A DA 18 ? ? C6 A DA 18 ? ? 113.66 117.00 -3.34 0.50 N 151 6 C5 A DA 18 ? ? C6 A DA 18 ? ? N1 A DA 18 ? ? 121.37 117.70 3.67 0.50 N 152 6 N1 A DA 18 ? ? C6 A DA 18 ? ? N6 A DA 18 ? ? 113.12 118.60 -5.48 0.60 N 153 6 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 113.68 108.30 5.38 0.30 N 154 6 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.60 108.30 6.30 0.30 N 155 6 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.77 108.30 2.47 0.30 N 156 6 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.89 108.30 3.59 0.30 N 157 7 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.58 108.30 3.28 0.30 N 158 7 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.26 108.30 2.96 0.30 N 159 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.86 108.30 4.56 0.30 N 160 7 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.05 108.30 3.75 0.30 N 161 7 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.75 117.00 -3.25 0.50 N 162 7 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.84 117.70 4.14 0.50 N 163 7 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 112.79 118.60 -5.81 0.60 N 164 7 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 113.65 108.30 5.35 0.30 N 165 7 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.39 108.30 2.09 0.30 N 166 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.47 108.30 2.17 0.30 N 167 7 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 117.25 121.90 -4.65 0.70 N 168 7 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 114.61 108.30 6.31 0.30 N 169 7 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.64 108.30 4.34 0.30 N 170 7 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.64 108.30 3.34 0.30 N 171 7 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 111.24 108.30 2.94 0.30 N 172 7 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 114.91 108.30 6.61 0.30 N 173 7 "O4'" A DA 18 ? ? "C1'" A DA 18 ? ? N9 A DA 18 ? ? 110.38 108.30 2.08 0.30 N 174 7 C4 A DA 18 ? ? C5 A DA 18 ? ? C6 A DA 18 ? ? 113.62 117.00 -3.38 0.50 N 175 7 C5 A DA 18 ? ? C6 A DA 18 ? ? N1 A DA 18 ? ? 121.39 117.70 3.69 0.50 N 176 7 N1 A DA 18 ? ? C6 A DA 18 ? ? N6 A DA 18 ? ? 113.03 118.60 -5.57 0.60 N 177 7 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.18 108.30 3.88 0.30 N 178 7 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.78 108.30 6.48 0.30 N 179 7 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.17 108.30 1.87 0.30 N 180 7 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.91 108.30 3.61 0.30 N 181 7 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.28 122.90 -3.62 0.60 N 182 8 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.28 108.30 2.98 0.30 N 183 8 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.70 108.30 2.40 0.30 N 184 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.14 108.30 4.84 0.30 N 185 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.17 108.30 4.87 0.30 N 186 8 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.70 117.00 -3.30 0.50 N 187 8 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.57 117.70 3.87 0.50 N 188 8 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 112.61 118.60 -5.99 0.60 N 189 8 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 113.34 108.30 5.04 0.30 N 190 8 "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? P A DG 7 ? ? 127.25 119.70 7.55 1.20 Y 191 8 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.34 108.30 2.04 0.30 N 192 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.50 108.30 2.20 0.30 N 193 8 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 117.30 121.90 -4.60 0.70 N 194 8 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 114.21 108.30 5.91 0.30 N 195 8 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.44 108.30 4.14 0.30 N 196 8 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.28 108.30 2.98 0.30 N 197 8 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.75 108.30 2.45 0.30 N 198 8 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 113.15 108.30 4.85 0.30 N 199 8 C4 A DA 18 ? ? C5 A DA 18 ? ? C6 A DA 18 ? ? 113.63 117.00 -3.37 0.50 N 200 8 C5 A DA 18 ? ? C6 A DA 18 ? ? N1 A DA 18 ? ? 121.44 117.70 3.74 0.50 N 201 8 N1 A DA 18 ? ? C6 A DA 18 ? ? N6 A DA 18 ? ? 112.82 118.60 -5.78 0.60 N 202 8 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.94 108.30 4.64 0.30 N 203 8 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.45 108.30 6.15 0.30 N 204 8 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.32 108.30 4.02 0.30 N 205 8 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 118.36 122.90 -4.54 0.60 N 206 9 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.79 108.30 3.49 0.30 N 207 9 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.30 108.30 3.00 0.30 N 208 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.26 108.30 4.96 0.30 N 209 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.25 108.30 4.95 0.30 N 210 9 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.52 117.00 -3.48 0.50 N 211 9 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.68 117.70 3.98 0.50 N 212 9 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 112.23 118.60 -6.37 0.60 N 213 9 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 113.92 108.30 5.62 0.30 N 214 9 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.83 108.30 2.53 0.30 N 215 9 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.28 108.30 1.98 0.30 N 216 9 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 112.80 108.30 4.50 0.30 N 217 9 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 117.52 121.90 -4.38 0.70 N 218 9 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 111.39 108.30 3.09 0.30 N 219 9 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.38 108.30 4.08 0.30 N 220 9 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.42 108.30 3.12 0.30 N 221 9 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.42 108.30 2.12 0.30 N 222 9 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 116.86 108.30 8.56 0.30 N 223 9 C4 A DA 18 ? ? C5 A DA 18 ? ? C6 A DA 18 ? ? 113.70 117.00 -3.30 0.50 N 224 9 C5 A DA 18 ? ? C6 A DA 18 ? ? N1 A DA 18 ? ? 121.40 117.70 3.70 0.50 N 225 9 N1 A DA 18 ? ? C6 A DA 18 ? ? N6 A DA 18 ? ? 113.02 118.60 -5.58 0.60 N 226 9 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 113.78 108.30 5.48 0.30 N 227 9 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.43 108.30 6.13 0.30 N 228 9 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.45 108.30 4.15 0.30 N 229 10 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.59 108.30 3.29 0.30 N 230 10 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.98 108.30 3.68 0.30 N 231 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.95 108.30 4.65 0.30 N 232 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.45 108.30 5.15 0.30 N 233 10 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.17 108.30 1.87 0.30 N 234 10 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.53 117.00 -3.47 0.50 N 235 10 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.66 117.70 3.96 0.50 N 236 10 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 111.74 118.60 -6.86 0.60 N 237 10 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.36 108.30 4.06 0.30 N 238 10 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.17 108.30 2.87 0.30 N 239 10 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.70 108.30 2.40 0.30 N 240 10 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.66 108.30 2.36 0.30 N 241 10 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 117.24 121.90 -4.66 0.70 N 242 10 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 112.74 108.30 4.44 0.30 N 243 10 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.70 108.30 4.40 0.30 N 244 10 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.13 108.30 2.83 0.30 N 245 10 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 116.53 108.30 8.23 0.30 N 246 10 C4 A DA 18 ? ? C5 A DA 18 ? ? C6 A DA 18 ? ? 113.62 117.00 -3.38 0.50 N 247 10 C5 A DA 18 ? ? C6 A DA 18 ? ? N1 A DA 18 ? ? 121.45 117.70 3.75 0.50 N 248 10 N1 A DA 18 ? ? C6 A DA 18 ? ? N6 A DA 18 ? ? 113.07 118.60 -5.53 0.60 N 249 10 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 114.28 108.30 5.98 0.30 N 250 10 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.66 108.30 6.36 0.30 N 251 10 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.70 108.30 2.40 0.30 N 252 10 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.21 108.30 3.91 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 5 ? ? 0.076 'SIDE CHAIN' 2 1 DG A 13 ? ? 0.066 'SIDE CHAIN' 3 3 DG A 10 ? ? 0.055 'SIDE CHAIN' 4 4 DA A 5 ? ? 0.059 'SIDE CHAIN' 5 4 DC A 9 ? ? 0.131 'SIDE CHAIN' 6 5 DG A 3 ? ? 0.052 'SIDE CHAIN' 7 5 DA A 5 ? ? 0.070 'SIDE CHAIN' 8 5 DG A 10 ? ? 0.059 'SIDE CHAIN' 9 7 DG A 10 ? ? 0.054 'SIDE CHAIN' 10 8 DA A 5 ? ? 0.065 'SIDE CHAIN' 11 8 DG A 10 ? ? 0.050 'SIDE CHAIN' 12 9 DA A 5 ? ? 0.070 'SIDE CHAIN' 13 9 DG A 10 ? ? 0.051 'SIDE CHAIN' 14 10 DG A 10 ? ? 0.057 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8PSI 'double helix' 8PSI 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 22 1_555 A DG 3 1_555 1.272 -2.137 0.051 -4.783 28.802 -137.787 1 A_DT22:DG3_A A 22 ? A 3 ? ? 2 1 A DG 13 1_555 A DG 2 1_555 -1.669 3.431 -0.316 11.387 -5.733 90.678 2 A_DG13:DG2_A A 13 ? A 2 ? 6 3 1 A DC 17 1_555 A DC 9 1_555 -1.390 -1.574 0.052 -5.327 -6.354 -167.314 3 A_DC17:DC9_A A 17 ? A 9 ? ? ? 1 A DG 11 1_555 A DG 8 1_555 -1.989 -3.218 -0.018 -8.094 10.576 88.624 4 A_DG11:DG8_A A 11 ? A 8 ? 6 3 1 A DG 15 1_555 A DG 19 1_555 1.826 3.252 -0.721 15.755 -5.986 -91.243 5 A_DG15:DG19_A A 15 ? A 19 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 22 1_555 A DG 3 1_555 A DG 13 1_555 A DG 2 1_555 2.836 1.249 3.003 -1.060 -8.258 165.604 0.643 -1.431 2.988 -4.162 0.534 165.642 1 AA_DT22DG13:DG2DG3_AA A 22 ? A 3 ? A 13 ? A 2 ? 1 A DC 17 1_555 A DC 9 1_555 A DG 11 1_555 A DG 8 1_555 0.486 -1.401 -3.178 -4.873 -4.286 91.191 -1.060 -0.248 -3.142 -2.996 3.407 91.370 2 AA_DC17DG11:DG8DC9_AA A 17 ? A 9 ? A 11 ? A 8 ? 1 A DG 11 1_555 A DG 8 1_555 A DG 15 1_555 A DG 19 1_555 -1.972 -3.183 0.022 6.523 -1.783 179.333 -1.592 0.986 0.021 -0.891 -3.261 179.334 3 AA_DG11DG15:DG19DG8_AA A 11 ? A 8 ? A 15 ? A 19 ? # _pdbx_audit_support.funding_organization 'German Research Foundation (DFG)' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 410497337 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details 'not applicable' #