HEADER SIGNALING PROTEIN 13-JUL-23 8PSR TITLE ERK2 COVALENTLY BOUND TO SYNTHREVD-12-OPT ARTIFICIAL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 1,MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED COMPND 5 KINASE 2,ERK-2,MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED COMPND 6 PROTEIN KINASE 2,MAP KINASE 2,MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE DEPHOSPHORYLATED INACTIVE ERK2 KINASE; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SYNTHREVD-12-OPT; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: SYNTHREVD-12-OPT IS AN ARTIFICIAL PEPTIDE CONTAINING COMPND 15 AN UNNATURAL AMINO ACID THAT FUNCTIONS AS AN MICHAEL ACCEPTOR WARHEAD COMPND 16 COVALENTLY BONDING ERK2 CYS161 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 OTHER_DETAILS: ARTIFICIAL SEQUENCE MOTIF KEYWDS MAPK KINASE, MAPK, INHIBITOR, COVALENT, ERK2, MICHAEL ACCEPTOR KEYWDS 2 WARHEAD, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.SOK,A.POTI,G.GOGL,A.REMENYI REVDAT 2 16-OCT-24 8PSR 1 JRNL REVDAT 1 24-JUL-24 8PSR 0 JRNL AUTH A.L.POTI,D.BALINT,A.ALEXA,P.SOK,K.OZSVATH,K.ALBERT, JRNL AUTH 2 G.TURCZEL,S.MAGYARI,O.EMBER,K.PAPP,S.B.KIRALY,T.IMRE, JRNL AUTH 3 K.NEMETH,T.KURTAN,G.GOGL,S.VARGA,T.SOOS,A.REMENYI JRNL TITL TARGETING A KEY PROTEIN-PROTEIN INTERACTION SURFACE ON JRNL TITL 2 MITOGEN-ACTIVATED PROTEIN KINASES BY A PRECISION-GUIDED JRNL TITL 3 WARHEAD SCAFFOLD. JRNL REF NAT COMMUN V. 15 8607 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39366929 JRNL DOI 10.1038/S41467-024-52574-1 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 39716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.4600 - 3.5400 1.00 2717 146 0.1430 0.1836 REMARK 3 2 3.5400 - 3.0900 1.00 2694 144 0.1670 0.1937 REMARK 3 3 3.0900 - 2.8100 1.00 2718 123 0.1812 0.2017 REMARK 3 4 2.8100 - 2.6100 1.00 2704 142 0.1868 0.1859 REMARK 3 5 2.6100 - 2.4500 1.00 2677 158 0.1891 0.1978 REMARK 3 6 2.4500 - 2.3300 1.00 2723 141 0.2046 0.2436 REMARK 3 7 2.3300 - 2.2300 1.00 2676 156 0.2024 0.2127 REMARK 3 8 2.2300 - 2.1400 1.00 2657 143 0.2060 0.2653 REMARK 3 9 2.1400 - 2.0700 1.00 2666 150 0.2041 0.2660 REMARK 3 10 2.0700 - 2.0000 0.99 2677 145 0.2208 0.2454 REMARK 3 11 2.0000 - 1.9500 0.99 2672 142 0.2414 0.2684 REMARK 3 12 1.9500 - 1.9000 0.99 2705 134 0.2827 0.2995 REMARK 3 13 1.9000 - 1.8500 0.99 2681 158 0.3215 0.3571 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.0096 -8.7444 -14.1915 REMARK 3 T TENSOR REMARK 3 T11: 0.2775 T22: 0.2310 REMARK 3 T33: 0.2735 T12: -0.0472 REMARK 3 T13: 0.0023 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 1.0108 L22: 4.6461 REMARK 3 L33: 1.7699 L12: 0.0811 REMARK 3 L13: 0.2201 L23: 0.5973 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: -0.0889 S13: -0.4294 REMARK 3 S21: -0.0651 S22: 0.0144 S23: -0.1352 REMARK 3 S31: 0.4408 S32: 0.0671 S33: -0.1043 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.5370 8.7319 -16.7696 REMARK 3 T TENSOR REMARK 3 T11: 0.1550 T22: 0.1337 REMARK 3 T33: 0.1692 T12: -0.0416 REMARK 3 T13: -0.0376 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.2726 L22: 2.5299 REMARK 3 L33: 3.3276 L12: 0.4372 REMARK 3 L13: -0.0206 L23: -0.3716 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.0783 S13: -0.0305 REMARK 3 S21: -0.1496 S22: -0.0747 S23: 0.0635 REMARK 3 S31: -0.0776 S32: 0.1281 S33: 0.0596 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.8480 18.4915 -8.8583 REMARK 3 T TENSOR REMARK 3 T11: 0.3271 T22: 0.2697 REMARK 3 T33: 0.2835 T12: -0.1056 REMARK 3 T13: -0.0400 T23: -0.0863 REMARK 3 L TENSOR REMARK 3 L11: 6.6308 L22: 3.9698 REMARK 3 L33: 4.4591 L12: 0.0901 REMARK 3 L13: 1.5885 L23: -4.0039 REMARK 3 S TENSOR REMARK 3 S11: -0.1325 S12: -1.1720 S13: 0.5536 REMARK 3 S21: 0.5875 S22: 0.0038 S23: 0.2321 REMARK 3 S31: -0.8275 S32: 0.0208 S33: 0.1224 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.7725 24.3439 -8.4802 REMARK 3 T TENSOR REMARK 3 T11: 0.4204 T22: 0.3625 REMARK 3 T33: 0.2421 T12: -0.2161 REMARK 3 T13: -0.0187 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 3.8056 L22: 4.5894 REMARK 3 L33: 1.7908 L12: 1.5145 REMARK 3 L13: 1.4887 L23: 1.0870 REMARK 3 S TENSOR REMARK 3 S11: 0.1556 S12: -0.4834 S13: 0.0452 REMARK 3 S21: 0.2524 S22: -0.1110 S23: -0.1545 REMARK 3 S31: -0.2747 S32: 0.2664 S33: -0.0241 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.7009 39.3124 0.0648 REMARK 3 T TENSOR REMARK 3 T11: 0.8683 T22: 0.8661 REMARK 3 T33: 0.5272 T12: -0.4003 REMARK 3 T13: 0.1446 T23: -0.1610 REMARK 3 L TENSOR REMARK 3 L11: 9.2134 L22: 5.2127 REMARK 3 L33: 6.7399 L12: -3.4810 REMARK 3 L13: 1.0461 L23: 0.3226 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: -1.6651 S13: 0.0225 REMARK 3 S21: 0.9924 S22: 0.1241 S23: 0.5736 REMARK 3 S31: 0.7656 S32: -1.1286 S33: -0.0855 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.3379 31.7762 -21.4848 REMARK 3 T TENSOR REMARK 3 T11: 0.6747 T22: 0.3012 REMARK 3 T33: 0.3251 T12: -0.1996 REMARK 3 T13: -0.0263 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 3.0217 L22: 2.6306 REMARK 3 L33: 2.0914 L12: 1.1523 REMARK 3 L13: 0.7928 L23: 1.1507 REMARK 3 S TENSOR REMARK 3 S11: -0.1985 S12: 0.0081 S13: 0.4182 REMARK 3 S21: -0.5959 S22: 0.0928 S23: 0.0216 REMARK 3 S31: -0.8355 S32: 0.4573 S33: 0.1108 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 327 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.3800 7.9570 -4.1486 REMARK 3 T TENSOR REMARK 3 T11: 0.2396 T22: 0.3667 REMARK 3 T33: 0.4418 T12: -0.0651 REMARK 3 T13: 0.0726 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 3.8307 L22: 2.4760 REMARK 3 L33: 7.8551 L12: -2.3223 REMARK 3 L13: 1.5233 L23: -3.5081 REMARK 3 S TENSOR REMARK 3 S11: 0.0622 S12: -0.1298 S13: 0.6408 REMARK 3 S21: 0.4569 S22: -0.1120 S23: 0.5447 REMARK 3 S31: -0.6826 S32: -0.6181 S33: 0.0603 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 435 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.8898 11.5500 -34.9689 REMARK 3 T TENSOR REMARK 3 T11: 0.6446 T22: 0.7019 REMARK 3 T33: 0.6115 T12: 0.0984 REMARK 3 T13: -0.1338 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 2.0020 L22: 2.0036 REMARK 3 L33: 9.4566 L12: 0.5017 REMARK 3 L13: 3.6828 L23: 2.0033 REMARK 3 S TENSOR REMARK 3 S11: 0.1222 S12: -0.5551 S13: -1.0538 REMARK 3 S21: 0.7205 S22: 0.5933 S23: -1.3413 REMARK 3 S31: 1.6345 S32: 1.9465 S33: -0.7111 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 443 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.8317 20.6024 -39.2947 REMARK 3 T TENSOR REMARK 3 T11: 0.5047 T22: 0.3086 REMARK 3 T33: 0.3723 T12: -0.0544 REMARK 3 T13: -0.1434 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 2.0098 L22: 9.7748 REMARK 3 L33: 4.2526 L12: 4.4012 REMARK 3 L13: -4.8516 L23: -4.0803 REMARK 3 S TENSOR REMARK 3 S11: -0.2266 S12: 0.8192 S13: 0.7351 REMARK 3 S21: -0.1507 S22: 0.2763 S23: -0.1934 REMARK 3 S31: -1.3671 S32: -0.3057 S33: -0.0355 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESTRAINS WERE USED FOR ABU UNNATURAL REMARK 3 AMINOACID PEPTID ADDUCTS (1.33) AND FOR THE COVALENT BOND TO REMARK 3 CYS161 (1.75). REMARK 4 REMARK 4 8PSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292131920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39751 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 43.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-CITRATE PH 5.5, 20% PEG 8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.32000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.66000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.49000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.83000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 179.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 HIS A 178 REMARK 465 ASP A 179 REMARK 465 HIS A 180 REMARK 465 THR A 181 REMARK 465 ARG A 359 REMARK 465 SER A 360 REMARK 465 ARG B 453 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ASP A 175 CG OD1 OD2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 PHE A 183 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 PHE A 331 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 332 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 437 CA - C - N ANGL. DEV. = -30.9 DEGREES REMARK 500 LEU B 437 O - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 ABU B 438 O - C - N ANGL. DEV. = -22.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 31 -60.76 -103.58 REMARK 500 ARG A 148 -5.99 75.16 REMARK 500 ASP A 149 34.77 -143.26 REMARK 500 ASP A 167 62.57 68.25 REMARK 500 LEU A 294 51.07 -98.54 REMARK 500 LEU A 294 51.07 -93.91 REMARK 500 MET A 333 -61.18 -109.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU B 437 -29.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PSR A 1 360 UNP P28482 MK01_HUMAN 1 360 DBREF 8PSR B 435 453 PDB 8PSR 8PSR 435 453 SEQADV 8PSR GLY A -3 UNP P28482 EXPRESSION TAG SEQADV 8PSR SER A -2 UNP P28482 EXPRESSION TAG SEQADV 8PSR ALA A -1 UNP P28482 EXPRESSION TAG SEQADV 8PSR SER A 0 UNP P28482 EXPRESSION TAG SEQRES 1 A 364 GLY SER ALA SER MET ALA ALA ALA ALA ALA ALA GLY ALA SEQRES 2 A 364 GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY SEQRES 3 A 364 PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA SEQRES 4 A 364 TYR GLY MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS SEQRES 5 A 364 VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS SEQRES 6 A 364 GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE SEQRES 7 A 364 LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN SEQRES 8 A 364 ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP SEQRES 9 A 364 VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR SEQRES 10 A 364 LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS ILE SEQRES 11 A 364 CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR SEQRES 12 A 364 ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO SEQRES 13 A 364 SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE SEQRES 14 A 364 CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS SEQRES 15 A 364 ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG SEQRES 16 A 364 TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY SEQRES 17 A 364 TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE SEQRES 18 A 364 LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY SEQRES 19 A 364 LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE SEQRES 20 A 364 LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE SEQRES 21 A 364 ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS SEQRES 22 A 364 LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA SEQRES 23 A 364 ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR SEQRES 24 A 364 PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU SEQRES 25 A 364 ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP SEQRES 26 A 364 GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU SEQRES 27 A 364 LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE SEQRES 28 A 364 PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER SEQRES 1 B 19 MET GLN LEU ABU LEU ASP SER SER ASN LEU ALA ARG ARG SEQRES 2 B 19 ARG ARG ARG ARG ARG ARG HET ABU B 438 6 HET ANP A 401 31 HET GOL A 402 6 HET GOL A 403 6 HETNAM ABU GAMMA-AMINO-BUTANOIC ACID HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM GOL GLYCEROL HETSYN ABU GAMMA(AMINO)-BUTYRIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ABU C4 H9 N O2 FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *286(H2 O) HELIX 1 AA1 MET A 1 ALA A 9 1 9 HELIX 2 AA2 HIS A 61 PHE A 78 1 18 HELIX 3 AA3 LEU A 112 GLN A 119 1 8 HELIX 4 AA4 SER A 122 ALA A 143 1 22 HELIX 5 AA5 LYS A 151 SER A 153 5 3 HELIX 6 AA6 ALA A 195 LEU A 200 1 6 HELIX 7 AA7 LYS A 207 ASN A 224 1 18 HELIX 8 AA8 HIS A 232 GLY A 245 1 14 HELIX 9 AA9 SER A 248 ASN A 253 1 6 HELIX 10 AB1 ASN A 257 LEU A 267 1 11 HELIX 11 AB2 PRO A 274 PHE A 279 1 6 HELIX 12 AB3 ASP A 283 LEU A 294 1 12 HELIX 13 AB4 GLU A 303 ALA A 309 1 7 HELIX 14 AB5 HIS A 310 GLU A 314 5 5 HELIX 15 AB6 ASP A 318 GLU A 322 5 5 HELIX 16 AB7 GLU A 334 LEU A 338 5 5 HELIX 17 AB8 PRO A 339 ALA A 352 1 14 HELIX 18 AB9 ARG A 353 GLN A 355 5 3 HELIX 19 AC1 SER B 442 ARG B 450 1 9 SHEET 1 AA1 2 GLU A 12 VAL A 14 0 SHEET 2 AA1 2 GLN A 17 PHE A 19 -1 O PHE A 19 N GLU A 12 SHEET 1 AA2 5 TYR A 25 GLU A 33 0 SHEET 2 AA2 5 MET A 38 ASP A 44 -1 O TYR A 43 N THR A 26 SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O LYS A 55 N MET A 38 SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O GLN A 105 N ALA A 52 SHEET 5 AA2 5 ILE A 86 ILE A 90 -1 N ASP A 88 O VAL A 104 SHEET 1 AA3 3 THR A 110 ASP A 111 0 SHEET 2 AA3 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110 SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AA4 2 VAL A 145 LEU A 146 0 SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 LINK SG CYS A 161 CB ABU B 438 1555 1555 1.80 LINK C LEU B 437 N ABU B 438 1555 1555 1.35 LINK C ABU B 438 N LEU B 439 1555 1555 1.30 CISPEP 1 GLY A 22 PRO A 23 0 5.86 CRYST1 62.130 62.130 214.980 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016095 0.009293 0.000000 0.00000 SCALE2 0.000000 0.018585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004652 0.00000