HEADER SIGNALING PROTEIN 13-JUL-23 8PST
TITLE ERK2 COVELENTLY BOUND TO RU60 CYCLOHEXENONE BASED INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: MAP KINASE 1,MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED
COMPND 5 KINASE 2,ERK-2,MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED
COMPND 6 PROTEIN KINASE 2,MAP KINASE 2,MAPK 2;
COMPND 7 EC: 2.7.11.24;
COMPND 8 ENGINEERED: YES;
COMPND 9 OTHER_DETAILS: THE DEPHOSPHORYLATED INACTIVE ERK2 KINASE WITH RU60
COMPND 10 COVALENT INHIBITOR AT THE DOCKING GROOVE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS MAPK KINASE, MAPK, INHIBITOR, COVALENT, ERK2, MICHAEL ACCEPTOR
KEYWDS 2 WARHEAD, SIGNALING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR P.SOK,A.POTI,A.REMENYI,G.GOGL
REVDAT 2 16-OCT-24 8PST 1 JRNL
REVDAT 1 24-JUL-24 8PST 0
JRNL AUTH A.L.POTI,D.BALINT,A.ALEXA,P.SOK,K.OZSVATH,K.ALBERT,
JRNL AUTH 2 G.TURCZEL,S.MAGYARI,O.EMBER,K.PAPP,S.B.KIRALY,T.IMRE,
JRNL AUTH 3 K.NEMETH,T.KURTAN,G.GOGL,S.VARGA,T.SOOS,A.REMENYI
JRNL TITL TARGETING A KEY PROTEIN-PROTEIN INTERACTION SURFACE ON
JRNL TITL 2 MITOGEN-ACTIVATED PROTEIN KINASES BY A PRECISION-GUIDED
JRNL TITL 3 WARHEAD SCAFFOLD.
JRNL REF NAT COMMUN V. 15 8607 2024
JRNL REFN ESSN 2041-1723
JRNL PMID 39366929
JRNL DOI 10.1038/S41467-024-52574-1
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.47
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4
REMARK 3 NUMBER OF REFLECTIONS : 29648
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.192
REMARK 3 R VALUE (WORKING SET) : 0.190
REMARK 3 FREE R VALUE : 0.224
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690
REMARK 3 FREE R VALUE TEST SET COUNT : 1390
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 4.0900 - 3.2500 0.89 2784 137 0.1655 0.2221
REMARK 3 2 3.2500 - 2.8400 0.91 2807 160 0.1976 0.2331
REMARK 3 3 2.8400 - 2.5800 0.92 2840 131 0.2102 0.2441
REMARK 3 4 2.5800 - 2.3900 0.93 2865 141 0.2112 0.2542
REMARK 3 5 2.3900 - 2.2500 0.93 2853 131 0.2069 0.2313
REMARK 3 6 2.2500 - 2.1400 0.94 2849 151 0.2225 0.3030
REMARK 3 7 2.1400 - 2.0500 0.94 2883 136 0.2262 0.2542
REMARK 3 8 2.0500 - 1.9700 0.93 2831 129 0.2582 0.2964
REMARK 3 9 1.9700 - 1.9000 0.89 2703 132 0.2892 0.2991
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.150
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 48 )
REMARK 3 ORIGIN FOR THE GROUP (A): -23.8278 -13.4239 1.3482
REMARK 3 T TENSOR
REMARK 3 T11: 0.1941 T22: 0.4161
REMARK 3 T33: 0.3418 T12: 0.0137
REMARK 3 T13: -0.0487 T23: -0.0967
REMARK 3 L TENSOR
REMARK 3 L11: 7.1460 L22: 3.5914
REMARK 3 L33: 4.2119 L12: -1.0239
REMARK 3 L13: -2.0817 L23: -0.6998
REMARK 3 S TENSOR
REMARK 3 S11: 0.0773 S12: 0.0027 S13: 0.4052
REMARK 3 S21: -0.0351 S22: -0.1439 S23: 0.5178
REMARK 3 S31: -0.5371 S32: -0.4950 S33: 0.0790
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 75 )
REMARK 3 ORIGIN FOR THE GROUP (A): -14.7385 -5.7463 11.0504
REMARK 3 T TENSOR
REMARK 3 T11: 0.2638 T22: 0.2796
REMARK 3 T33: 0.2869 T12: -0.0204
REMARK 3 T13: 0.0782 T23: -0.0360
REMARK 3 L TENSOR
REMARK 3 L11: 3.3949 L22: 6.8406
REMARK 3 L33: 6.3866 L12: 1.0483
REMARK 3 L13: 0.6863 L23: 3.0680
REMARK 3 S TENSOR
REMARK 3 S11: 0.1530 S12: -0.2237 S13: 0.3057
REMARK 3 S21: -0.0078 S22: -0.1302 S23: 0.2514
REMARK 3 S31: -0.8933 S32: -0.1166 S33: -0.0295
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 244 )
REMARK 3 ORIGIN FOR THE GROUP (A): -16.3690 -15.3973 23.5451
REMARK 3 T TENSOR
REMARK 3 T11: 0.2570 T22: 0.2346
REMARK 3 T33: 0.3308 T12: -0.0217
REMARK 3 T13: -0.0325 T23: -0.0185
REMARK 3 L TENSOR
REMARK 3 L11: 1.1318 L22: 2.1299
REMARK 3 L33: 5.7889 L12: -0.0563
REMARK 3 L13: -1.0346 L23: -0.1445
REMARK 3 S TENSOR
REMARK 3 S11: 0.0338 S12: -0.1275 S13: 0.0179
REMARK 3 S21: 0.3872 S22: -0.0188 S23: 0.0342
REMARK 3 S31: -0.0226 S32: 0.3425 S33: -0.0179
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 266 )
REMARK 3 ORIGIN FOR THE GROUP (A): -11.3546 -1.7269 47.6612
REMARK 3 T TENSOR
REMARK 3 T11: 1.0035 T22: 0.6718
REMARK 3 T33: 0.7194 T12: -0.1172
REMARK 3 T13: -0.1343 T23: -0.1701
REMARK 3 L TENSOR
REMARK 3 L11: 1.5188 L22: 7.0433
REMARK 3 L33: 2.1254 L12: -1.1776
REMARK 3 L13: -0.7766 L23: 1.6250
REMARK 3 S TENSOR
REMARK 3 S11: -0.3308 S12: -0.3495 S13: 0.5588
REMARK 3 S21: 0.4629 S22: 0.7604 S23: -1.4436
REMARK 3 S31: 0.0286 S32: 0.8852 S33: -0.4063
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 326 )
REMARK 3 ORIGIN FOR THE GROUP (A): -12.7981 -22.8409 38.5826
REMARK 3 T TENSOR
REMARK 3 T11: 0.6123 T22: 0.4145
REMARK 3 T33: 0.3277 T12: 0.1142
REMARK 3 T13: -0.0889 T23: 0.0580
REMARK 3 L TENSOR
REMARK 3 L11: 2.3971 L22: 4.0275
REMARK 3 L33: 4.2821 L12: -0.1254
REMARK 3 L13: -0.9535 L23: 0.4343
REMARK 3 S TENSOR
REMARK 3 S11: -0.0240 S12: -0.3148 S13: -0.2327
REMARK 3 S21: 0.9793 S22: -0.0402 S23: -0.0895
REMARK 3 S31: 0.5017 S32: 0.6773 S33: 0.0699
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 327 THROUGH 358 )
REMARK 3 ORIGIN FOR THE GROUP (A): -4.3053 -2.1109 9.2588
REMARK 3 T TENSOR
REMARK 3 T11: 0.4477 T22: 0.5148
REMARK 3 T33: 0.6418 T12: -0.2044
REMARK 3 T13: 0.1160 T23: -0.0405
REMARK 3 L TENSOR
REMARK 3 L11: 3.4685 L22: 5.7040
REMARK 3 L33: 5.5842 L12: -1.4824
REMARK 3 L13: 0.6909 L23: -0.6342
REMARK 3 S TENSOR
REMARK 3 S11: 0.0268 S12: -0.1597 S13: 0.2763
REMARK 3 S21: 0.0300 S22: 0.0657 S23: -1.3779
REMARK 3 S31: -1.0485 S32: 1.1955 S33: -0.1023
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: DETAILS OF THE REFINEMENT: IDEAL BOND
REMARK 3 LENGTH RESTRAINTS WERE USED FOR THE CYS-RU67 COVALENT BOND
REMARK 4
REMARK 4 8PST COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-23.
REMARK 100 THE DEPOSITION ID IS D_1292131836.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-NOV-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID23-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29741
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900
REMARK 200 RESOLUTION RANGE LOW (A) : 48.470
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7
REMARK 200 DATA REDUNDANCY : 4.600
REMARK 200 R MERGE (I) : 0.05700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8100
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.70600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: RHOMBOID
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.60
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000. 0.1 M NA-CITRATE PH 5.5,
REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.82500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.46000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.43000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.46000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.82500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.43000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -3
REMARK 465 SER A -2
REMARK 465 ALA A -1
REMARK 465 SER A 0
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 ALA A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 ALA A 7
REMARK 465 GLY A 8
REMARK 465 ALA A 9
REMARK 465 GLY A 10
REMARK 465 PRO A 176
REMARK 465 ASP A 177
REMARK 465 HIS A 178
REMARK 465 ASP A 179
REMARK 465 HIS A 180
REMARK 465 THR A 181
REMARK 465 GLY A 182
REMARK 465 PHE A 183
REMARK 465 LEU A 184
REMARK 465 THR A 185
REMARK 465 GLU A 186
REMARK 465 TYR A 187
REMARK 465 VAL A 188
REMARK 465 SER A 202
REMARK 465 LYS A 203
REMARK 465 ARG A 359
REMARK 465 SER A 360
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ASP A 175 CG OD1 OD2
REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2
REMARK 470 ASN A 201 CG OD1 ND2
REMARK 470 GLU A 326 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD2 ASP A 167 O HOH A 501 2.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 TYR A 36 28.65 -147.75
REMARK 500 ARG A 148 -3.29 76.74
REMARK 500 ASP A 149 41.11 -144.74
REMARK 500 ASP A 167 73.91 64.02
REMARK 500 ASP A 167 75.36 61.44
REMARK 500 LEU A 294 53.13 -100.23
REMARK 500 ASP A 318 83.92 -157.45
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8PST A 1 360 UNP P28482 MK01_HUMAN 1 360
SEQADV 8PST GLY A -3 UNP P28482 EXPRESSION TAG
SEQADV 8PST SER A -2 UNP P28482 EXPRESSION TAG
SEQADV 8PST ALA A -1 UNP P28482 EXPRESSION TAG
SEQADV 8PST SER A 0 UNP P28482 EXPRESSION TAG
SEQRES 1 A 364 GLY SER ALA SER MET ALA ALA ALA ALA ALA ALA GLY ALA
SEQRES 2 A 364 GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY
SEQRES 3 A 364 PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA
SEQRES 4 A 364 TYR GLY MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS
SEQRES 5 A 364 VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS
SEQRES 6 A 364 GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE
SEQRES 7 A 364 LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN
SEQRES 8 A 364 ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP
SEQRES 9 A 364 VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR
SEQRES 10 A 364 LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS ILE
SEQRES 11 A 364 CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR
SEQRES 12 A 364 ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO
SEQRES 13 A 364 SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE
SEQRES 14 A 364 CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS
SEQRES 15 A 364 ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG
SEQRES 16 A 364 TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY
SEQRES 17 A 364 TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE
SEQRES 18 A 364 LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY
SEQRES 19 A 364 LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE
SEQRES 20 A 364 LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE
SEQRES 21 A 364 ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS
SEQRES 22 A 364 LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA
SEQRES 23 A 364 ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR
SEQRES 24 A 364 PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU
SEQRES 25 A 364 ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP
SEQRES 26 A 364 GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU
SEQRES 27 A 364 LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE
SEQRES 28 A 364 PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER
HET AN2 A 401 27
HET DC6 A 402 19
HETNAM AN2 AMP PHOSPHORAMIDATE
HETNAM DC6 ~{O}3-~{TERT}-BUTYL ~{O}1-METHYL (1~{R},3~{S})-1-
HETNAM 2 DC6 METHYL-4-OXIDANYLIDENE-CYCLOHEXANE-1,3-DICARBOXYLATE
FORMUL 2 AN2 C10 H16 N6 O9 P2
FORMUL 3 DC6 C14 H22 O5
FORMUL 4 HOH *137(H2 O)
HELIX 1 AA1 HIS A 61 PHE A 78 1 18
HELIX 2 AA2 LEU A 112 GLN A 119 1 8
HELIX 3 AA3 SER A 122 ALA A 143 1 22
HELIX 4 AA4 LYS A 151 SER A 153 5 3
HELIX 5 AA5 GLU A 197 ASN A 201 5 5
HELIX 6 AA6 LYS A 207 ASN A 224 1 18
HELIX 7 AA7 HIS A 232 GLY A 245 1 14
HELIX 8 AA8 SER A 248 CYS A 254 1 7
HELIX 9 AA9 ASN A 257 SER A 266 1 10
HELIX 10 AB1 PRO A 274 PHE A 279 1 6
HELIX 11 AB2 ASP A 283 LEU A 294 1 12
HELIX 12 AB3 ASN A 297 ARG A 301 5 5
HELIX 13 AB4 GLU A 303 ALA A 309 1 7
HELIX 14 AB5 HIS A 310 GLU A 314 5 5
HELIX 15 AB6 ASP A 318 GLU A 322 5 5
HELIX 16 AB7 PRO A 339 ALA A 352 1 14
HELIX 17 AB8 ARG A 353 GLN A 355 5 3
SHEET 1 AA1 2 GLU A 12 VAL A 14 0
SHEET 2 AA1 2 GLN A 17 PHE A 19 -1 O PHE A 19 N GLU A 12
SHEET 1 AA2 5 TYR A 25 GLU A 33 0
SHEET 2 AA2 5 GLY A 37 ASP A 44 -1 O VAL A 39 N GLY A 32
SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O LYS A 55 N MET A 38
SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O VAL A 101 N ILE A 56
SHEET 5 AA2 5 ASP A 88 ILE A 90 -1 N ASP A 88 O VAL A 104
SHEET 1 AA3 3 THR A 110 ASP A 111 0
SHEET 2 AA3 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110
SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156
SHEET 1 AA4 2 VAL A 145 LEU A 146 0
SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146
LINK SG CYS A 161 C3 DC6 A 402 1555 1555 1.76
CISPEP 1 GLY A 22 PRO A 23 0 1.62
CRYST1 41.650 76.860 124.920 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.024010 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013011 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008005 0.00000