HEADER SIGNALING PROTEIN 13-JUL-23 8PSW
TITLE ERK2 COVALENTLY BOUND TO RU67 CYCLOHEXENONE BASED INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: MAP KINASE 1,MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED
COMPND 5 KINASE 2,ERK-2,MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED
COMPND 6 PROTEIN KINASE 2,MAP KINASE 2,MAPK 2;
COMPND 7 EC: 2.7.11.24;
COMPND 8 ENGINEERED: YES;
COMPND 9 OTHER_DETAILS: THE DEPHOSPHORYLATED INACTIVE ERK2 KINASE WITH RU67
COMPND 10 COVALENT INHIBITOR AT THE DOCKING GROOVE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS MAPK KINASE, MAPK, INHIBITOR, COVALENT, ERK2, MICHAEL ACCEPTOR
KEYWDS 2 WARHEAD, SIGNALING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR P.SOK,A.POTI,A.REMENYI,G.GOGL
REVDAT 2 16-OCT-24 8PSW 1 JRNL
REVDAT 1 24-JUL-24 8PSW 0
JRNL AUTH A.L.POTI,D.BALINT,A.ALEXA,P.SOK,K.OZSVATH,K.ALBERT,
JRNL AUTH 2 G.TURCZEL,S.MAGYARI,O.EMBER,K.PAPP,S.B.KIRALY,T.IMRE,
JRNL AUTH 3 K.NEMETH,T.KURTAN,G.GOGL,S.VARGA,T.SOOS,A.REMENYI
JRNL TITL TARGETING A KEY PROTEIN-PROTEIN INTERACTION SURFACE ON
JRNL TITL 2 MITOGEN-ACTIVATED PROTEIN KINASES BY A PRECISION-GUIDED
JRNL TITL 3 WARHEAD SCAFFOLD.
JRNL REF NAT COMMUN V. 15 8607 2024
JRNL REFN ESSN 2041-1723
JRNL PMID 39366929
JRNL DOI 10.1038/S41467-024-52574-1
REMARK 2
REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.14
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 28468
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.191
REMARK 3 R VALUE (WORKING SET) : 0.189
REMARK 3 FREE R VALUE : 0.215
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060
REMARK 3 FREE R VALUE TEST SET COUNT : 1440
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 4.3100 - 3.4200 1.00 2766 125 0.1626 0.1683
REMARK 3 2 3.4200 - 2.9900 1.00 2698 152 0.1785 0.1940
REMARK 3 3 2.9900 - 2.7100 1.00 2698 148 0.1969 0.2737
REMARK 3 4 2.7100 - 2.5200 1.00 2704 129 0.2145 0.2248
REMARK 3 5 2.5200 - 2.3700 1.00 2673 142 0.2147 0.2550
REMARK 3 6 2.3700 - 2.2500 1.00 2668 140 0.2264 0.2921
REMARK 3 7 2.2500 - 2.1500 1.00 2655 136 0.2309 0.2443
REMARK 3 8 2.1500 - 2.0700 1.00 2648 152 0.2451 0.2910
REMARK 3 9 2.0700 - 2.0000 1.00 2630 153 0.2955 0.3390
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.720
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.46
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 162 )
REMARK 3 ORIGIN FOR THE GROUP (A): -17.7255 -13.8208 11.9626
REMARK 3 T TENSOR
REMARK 3 T11: 0.1522 T22: 0.2316
REMARK 3 T33: 0.2744 T12: -0.0145
REMARK 3 T13: 0.0058 T23: -0.0199
REMARK 3 L TENSOR
REMARK 3 L11: 1.3472 L22: 1.7227
REMARK 3 L33: 3.7591 L12: -0.1577
REMARK 3 L13: -0.2762 L23: 0.9559
REMARK 3 S TENSOR
REMARK 3 S11: 0.0412 S12: 0.0731 S13: 0.0342
REMARK 3 S21: 0.1490 S22: -0.0747 S23: 0.0886
REMARK 3 S31: -0.0046 S32: -0.1418 S33: 0.0151
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 223 )
REMARK 3 ORIGIN FOR THE GROUP (A): -14.7121 -8.6217 29.4650
REMARK 3 T TENSOR
REMARK 3 T11: 0.3956 T22: 0.2811
REMARK 3 T33: 0.2919 T12: -0.0420
REMARK 3 T13: -0.0388 T23: -0.0059
REMARK 3 L TENSOR
REMARK 3 L11: 2.1798 L22: 5.5818
REMARK 3 L33: 7.5634 L12: -0.7177
REMARK 3 L13: -1.6297 L23: 2.1534
REMARK 3 S TENSOR
REMARK 3 S11: 0.0345 S12: -0.1679 S13: 0.3392
REMARK 3 S21: 0.4770 S22: 0.1054 S23: -0.0578
REMARK 3 S31: -0.3522 S32: 0.4707 S33: -0.0996
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 326 )
REMARK 3 ORIGIN FOR THE GROUP (A): -14.5164 -13.0474 40.2810
REMARK 3 T TENSOR
REMARK 3 T11: 0.6710 T22: 0.3768
REMARK 3 T33: 0.3368 T12: -0.0061
REMARK 3 T13: -0.0087 T23: 0.0011
REMARK 3 L TENSOR
REMARK 3 L11: 1.4290 L22: 5.0520
REMARK 3 L33: 2.8914 L12: -1.2651
REMARK 3 L13: -0.3745 L23: 1.5976
REMARK 3 S TENSOR
REMARK 3 S11: 0.0224 S12: -0.2920 S13: 0.0991
REMARK 3 S21: 1.1707 S22: 0.0208 S23: -0.0384
REMARK 3 S31: 0.4623 S32: 0.2774 S33: -0.0482
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 327 THROUGH 358 )
REMARK 3 ORIGIN FOR THE GROUP (A): -5.4145 -1.4308 7.4534
REMARK 3 T TENSOR
REMARK 3 T11: 0.2814 T22: 0.3958
REMARK 3 T33: 0.5020 T12: -0.1181
REMARK 3 T13: 0.1220 T23: 0.0227
REMARK 3 L TENSOR
REMARK 3 L11: 7.3564 L22: 8.8116
REMARK 3 L33: 9.2237 L12: 0.2290
REMARK 3 L13: 3.5523 L23: -0.8055
REMARK 3 S TENSOR
REMARK 3 S11: -0.2654 S12: -0.0584 S13: 0.1631
REMARK 3 S21: -0.0777 S22: 0.0816 S23: -0.5257
REMARK 3 S31: -1.0575 S32: 0.7491 S33: 0.1787
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: IDEAL BOND LENGTH RESTRAINTS WERE USED
REMARK 3 FOR THE CYS-RU67 COVALENT BOND
REMARK 4
REMARK 4 8PSW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-23.
REMARK 100 THE DEPOSITION ID IS D_1292131617.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-NOV-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID23-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28485
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 49.140
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 11.80
REMARK 200 R MERGE (I) : 0.14900
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4900
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 1.60800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: RHOMBOID
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.70
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG1000, 0.1M HEPES PH 7.5, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.73500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.61000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.69500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.61000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.73500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.69500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -3
REMARK 465 SER A -2
REMARK 465 ALA A -1
REMARK 465 SER A 0
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 ALA A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 ALA A 7
REMARK 465 GLY A 8
REMARK 465 ALA A 9
REMARK 465 GLY A 10
REMARK 465 ASP A 177
REMARK 465 HIS A 178
REMARK 465 ASP A 179
REMARK 465 HIS A 180
REMARK 465 THR A 181
REMARK 465 GLY A 182
REMARK 465 PHE A 183
REMARK 465 LEU A 184
REMARK 465 THR A 185
REMARK 465 GLU A 186
REMARK 465 ARG A 359
REMARK 465 SER A 360
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 TYR A 187 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 VAL A 188 CG1 CG2
REMARK 470 LYS A 330 CG CD CE NZ
REMARK 470 PHE A 331 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ASP A 332 CG OD1 OD2
REMARK 470 GLU A 334 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 148 -3.50 76.63
REMARK 500 ASP A 149 37.06 -140.50
REMARK 500 ASP A 167 81.49 60.17
REMARK 500 ASP A 167 81.49 60.16
REMARK 500 ASP A 175 89.82 -162.19
REMARK 500 LYS A 203 -72.10 -57.32
REMARK 500 LEU A 294 52.29 -96.78
REMARK 500 ASP A 318 88.86 -153.15
REMARK 500 GLU A 334 72.35 57.27
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8PSW A 1 360 UNP P28482 MK01_HUMAN 1 360
SEQADV 8PSW GLY A -3 UNP P28482 EXPRESSION TAG
SEQADV 8PSW SER A -2 UNP P28482 EXPRESSION TAG
SEQADV 8PSW ALA A -1 UNP P28482 EXPRESSION TAG
SEQADV 8PSW SER A 0 UNP P28482 EXPRESSION TAG
SEQRES 1 A 364 GLY SER ALA SER MET ALA ALA ALA ALA ALA ALA GLY ALA
SEQRES 2 A 364 GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY
SEQRES 3 A 364 PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA
SEQRES 4 A 364 TYR GLY MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS
SEQRES 5 A 364 VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS
SEQRES 6 A 364 GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE
SEQRES 7 A 364 LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN
SEQRES 8 A 364 ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP
SEQRES 9 A 364 VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR
SEQRES 10 A 364 LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS ILE
SEQRES 11 A 364 CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR
SEQRES 12 A 364 ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO
SEQRES 13 A 364 SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE
SEQRES 14 A 364 CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS
SEQRES 15 A 364 ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG
SEQRES 16 A 364 TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY
SEQRES 17 A 364 TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE
SEQRES 18 A 364 LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY
SEQRES 19 A 364 LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE
SEQRES 20 A 364 LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE
SEQRES 21 A 364 ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS
SEQRES 22 A 364 LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA
SEQRES 23 A 364 ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR
SEQRES 24 A 364 PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU
SEQRES 25 A 364 ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP
SEQRES 26 A 364 GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU
SEQRES 27 A 364 LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE
SEQRES 28 A 364 PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER
HET AN2 A 401 27
HET D2I A 402 25
HETNAM AN2 AMP PHOSPHORAMIDATE
HETNAM D2I ~{O}3-~{TERT}-BUTYL ~{O}1-METHYL (1~{R},3~{R})-4-
HETNAM 2 D2I OXIDANYLIDENE-1-(PHENYLMETHYL)CYCLOHEXANE-1,3-
HETNAM 3 D2I DICARBOXYLATE
FORMUL 2 AN2 C10 H16 N6 O9 P2
FORMUL 3 D2I C20 H26 O5
FORMUL 4 HOH *105(H2 O)
HELIX 1 AA1 HIS A 61 PHE A 78 1 18
HELIX 2 AA2 THR A 94 MET A 98 5 5
HELIX 3 AA3 LEU A 112 LYS A 117 1 6
HELIX 4 AA4 SER A 122 ALA A 143 1 22
HELIX 5 AA5 LYS A 151 SER A 153 5 3
HELIX 6 AA6 ALA A 195 LEU A 200 1 6
HELIX 7 AA7 LYS A 207 ASN A 224 1 18
HELIX 8 AA8 HIS A 232 GLY A 245 1 14
HELIX 9 AA9 SER A 248 ASN A 253 1 6
HELIX 10 AB1 ASN A 257 SER A 266 1 10
HELIX 11 AB2 PRO A 274 PHE A 279 1 6
HELIX 12 AB3 ASP A 283 LEU A 294 1 12
HELIX 13 AB4 GLU A 303 ALA A 309 1 7
HELIX 14 AB5 HIS A 310 GLU A 314 5 5
HELIX 15 AB6 ASP A 318 GLU A 322 5 5
HELIX 16 AB7 PRO A 339 THR A 351 1 13
HELIX 17 AB8 ALA A 352 GLN A 355 5 4
SHEET 1 AA1 2 MET A 13 VAL A 14 0
SHEET 2 AA1 2 GLN A 17 VAL A 18 -1 O GLN A 17 N VAL A 14
SHEET 1 AA2 5 TYR A 25 GLU A 33 0
SHEET 2 AA2 5 GLY A 37 ASP A 44 -1 O VAL A 39 N GLY A 32
SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O LYS A 55 N MET A 38
SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O GLN A 105 N ALA A 52
SHEET 5 AA2 5 ILE A 86 ILE A 90 -1 N ASN A 87 O VAL A 104
SHEET 1 AA3 3 THR A 110 ASP A 111 0
SHEET 2 AA3 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110
SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156
SHEET 1 AA4 2 VAL A 145 LEU A 146 0
SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146
LINK SG CYS A 161 C3 D2I A 402 1555 1555 1.73
CISPEP 1 GLY A 22 PRO A 23 0 -2.08
CRYST1 41.470 77.390 127.220 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.024114 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012922 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007860 0.00000