HEADER SIGNALING PROTEIN 13-JUL-23 8PT1 TITLE ERK2 COVELENTLY BOUND TO RU76 CYCLOHEXENONE BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 1,MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED COMPND 5 KINASE 2,ERK-2,MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED COMPND 6 PROTEIN KINASE 2,MAP KINASE 2,MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE DEPHOSPHORYLATED INACTIVE ERK2 KINASE WITH RU76 COMPND 10 COVALENT INHIBITOR AT THE DOCKING GROOVE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MAPK KINASE, MAPK, INHIBITOR, COVALENT, ERK2, MICHAEL ACCEPTOR KEYWDS 2 WARHEAD, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.SOK,A.POTI,A.REMENYI,G.GOGL REVDAT 1 24-JUL-24 8PT1 0 JRNL AUTH P.SOK,A.POTI,A.REMENYI,T.SOOS,D.BALINT JRNL TITL TARGETING A KEY PROTEIN-PROTEIN INTERACTION SURFACE ON JRNL TITL 2 MITOGEN-ACTIVATED PROTEIN KINASES BY A MICHAEL JRNL TITL 3 ACCEPTOR-BASED CYCLIC WARHEAD SCAFFOLD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.2300 - 3.3600 1.00 2807 160 0.1525 0.1884 REMARK 3 2 3.3600 - 2.9300 1.00 2767 163 0.1753 0.1991 REMARK 3 3 2.9300 - 2.6700 1.00 2757 141 0.1859 0.2096 REMARK 3 4 2.6700 - 2.4800 1.00 2777 131 0.1808 0.2006 REMARK 3 5 2.4700 - 2.3300 1.00 2728 141 0.1803 0.2217 REMARK 3 6 2.3300 - 2.2100 1.00 2748 145 0.1850 0.2230 REMARK 3 7 2.2100 - 2.1200 1.00 2758 140 0.1931 0.2312 REMARK 3 8 2.1200 - 2.0300 1.00 2716 131 0.1990 0.2483 REMARK 3 9 2.0300 - 1.9600 1.00 2725 129 0.2202 0.2471 REMARK 3 10 1.9600 - 1.9000 1.00 2710 131 0.2226 0.2325 REMARK 3 11 1.9000 - 1.8500 1.00 2726 140 0.2537 0.2931 REMARK 3 12 1.8500 - 1.8000 1.00 2707 113 0.2727 0.3012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9808 -12.6749 3.4297 REMARK 3 T TENSOR REMARK 3 T11: 0.1751 T22: 0.2994 REMARK 3 T33: 0.2359 T12: 0.0424 REMARK 3 T13: 0.0010 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 2.3923 L22: 3.4562 REMARK 3 L33: 3.0470 L12: 2.3327 REMARK 3 L13: 0.8708 L23: 1.8896 REMARK 3 S TENSOR REMARK 3 S11: 0.1635 S12: 0.0271 S13: 0.0936 REMARK 3 S21: -0.0225 S22: -0.3695 S23: 0.3768 REMARK 3 S31: -0.2714 S32: -0.5601 S33: 0.1755 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2113 -5.1538 14.5288 REMARK 3 T TENSOR REMARK 3 T11: 0.2706 T22: 0.3252 REMARK 3 T33: 0.3312 T12: -0.0999 REMARK 3 T13: 0.0520 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 4.1220 L22: 2.6617 REMARK 3 L33: 7.0419 L12: -2.7587 REMARK 3 L13: -2.3532 L23: 2.3115 REMARK 3 S TENSOR REMARK 3 S11: 0.1197 S12: -0.3630 S13: 0.2474 REMARK 3 S21: 0.2484 S22: 0.2101 S23: -0.2700 REMARK 3 S31: -0.6305 S32: 0.5778 S33: -0.3312 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3015 -18.9346 17.3337 REMARK 3 T TENSOR REMARK 3 T11: 0.1827 T22: 0.2377 REMARK 3 T33: 0.2667 T12: 0.0000 REMARK 3 T13: -0.0085 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.6322 L22: 2.0872 REMARK 3 L33: 5.2065 L12: -0.2708 REMARK 3 L13: -0.3191 L23: -0.8769 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.0474 S13: -0.0221 REMARK 3 S21: 0.1072 S22: -0.0688 S23: -0.0911 REMARK 3 S31: 0.2569 S32: 0.1850 S33: 0.0154 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3886 -10.9390 22.8428 REMARK 3 T TENSOR REMARK 3 T11: 0.4119 T22: 0.3748 REMARK 3 T33: 0.3197 T12: -0.1461 REMARK 3 T13: -0.0483 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 5.8090 L22: 1.9238 REMARK 3 L33: 4.0741 L12: -1.3577 REMARK 3 L13: 0.5527 L23: -1.4048 REMARK 3 S TENSOR REMARK 3 S11: 0.0933 S12: -0.1549 S13: 0.9290 REMARK 3 S21: 0.9930 S22: -0.2077 S23: -0.1762 REMARK 3 S31: -0.6453 S32: 0.8073 S33: -0.0030 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0884 -1.4712 26.5248 REMARK 3 T TENSOR REMARK 3 T11: 1.0247 T22: 0.6776 REMARK 3 T33: 1.2721 T12: -0.0863 REMARK 3 T13: 0.1831 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 3.1123 L22: 4.7822 REMARK 3 L33: 2.8454 L12: 3.9096 REMARK 3 L13: 2.9525 L23: 3.6075 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: 0.6657 S13: 1.4811 REMARK 3 S21: -1.0141 S22: 0.3996 S23: 0.0102 REMARK 3 S31: -0.9370 S32: 1.3247 S33: -0.3684 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1431 -12.2194 33.5622 REMARK 3 T TENSOR REMARK 3 T11: 0.3952 T22: 0.2947 REMARK 3 T33: 0.2416 T12: -0.0584 REMARK 3 T13: -0.0265 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 5.0275 L22: 2.3608 REMARK 3 L33: 5.2236 L12: -1.1537 REMARK 3 L13: 0.0349 L23: 1.6974 REMARK 3 S TENSOR REMARK 3 S11: -0.0693 S12: 0.0147 S13: 0.4836 REMARK 3 S21: 0.2688 S22: 0.1792 S23: -0.1814 REMARK 3 S31: -0.2719 S32: 0.5703 S33: -0.1015 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7752 -9.1141 38.5895 REMARK 3 T TENSOR REMARK 3 T11: 0.4589 T22: 0.2600 REMARK 3 T33: 0.3181 T12: -0.0360 REMARK 3 T13: 0.0644 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 4.2481 L22: 6.5935 REMARK 3 L33: 8.5830 L12: -2.1630 REMARK 3 L13: 2.4741 L23: 3.9997 REMARK 3 S TENSOR REMARK 3 S11: -0.1175 S12: -0.1289 S13: 0.3299 REMARK 3 S21: -0.1048 S22: -0.0411 S23: 0.1920 REMARK 3 S31: -0.8384 S32: -0.1654 S33: 0.1879 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1591 -9.9236 47.2464 REMARK 3 T TENSOR REMARK 3 T11: 0.6413 T22: 0.4021 REMARK 3 T33: 0.3201 T12: 0.0083 REMARK 3 T13: -0.0239 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 1.2694 L22: 5.7509 REMARK 3 L33: 2.4603 L12: -0.8993 REMARK 3 L13: 0.9267 L23: 1.4833 REMARK 3 S TENSOR REMARK 3 S11: -0.4051 S12: -0.1818 S13: 0.2119 REMARK 3 S21: 0.5107 S22: 0.4052 S23: -0.1973 REMARK 3 S31: -0.1317 S32: 0.3011 S33: 0.0727 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6304 -24.8798 35.1288 REMARK 3 T TENSOR REMARK 3 T11: 0.4235 T22: 0.4549 REMARK 3 T33: 0.2900 T12: 0.0927 REMARK 3 T13: -0.0930 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 2.6738 L22: 2.9861 REMARK 3 L33: 4.5715 L12: -0.5746 REMARK 3 L13: -1.1887 L23: 0.2315 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: -0.2704 S13: -0.1319 REMARK 3 S21: 0.5758 S22: -0.0121 S23: -0.3861 REMARK 3 S31: 0.5185 S32: 0.9580 S33: 0.0137 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 327 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9892 -2.3365 17.9648 REMARK 3 T TENSOR REMARK 3 T11: 0.5550 T22: 0.8015 REMARK 3 T33: 0.8234 T12: -0.1380 REMARK 3 T13: 0.1698 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 5.3717 L22: 5.3945 REMARK 3 L33: 3.3219 L12: -5.4818 REMARK 3 L13: 4.2301 L23: -4.3728 REMARK 3 S TENSOR REMARK 3 S11: -0.0627 S12: 0.0973 S13: -0.5117 REMARK 3 S21: 0.0713 S22: -0.4301 S23: -1.1746 REMARK 3 S31: -0.5031 S32: 1.3312 S33: 0.5344 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5318 -2.0368 3.9099 REMARK 3 T TENSOR REMARK 3 T11: 0.3354 T22: 0.3141 REMARK 3 T33: 0.3663 T12: -0.1060 REMARK 3 T13: 0.1413 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 2.7383 L22: 5.7355 REMARK 3 L33: 3.2470 L12: -0.3652 REMARK 3 L13: 1.0272 L23: 0.7758 REMARK 3 S TENSOR REMARK 3 S11: 0.1124 S12: 0.2327 S13: 0.1476 REMARK 3 S21: -0.5202 S22: 0.3681 S23: -0.7820 REMARK 3 S31: -0.8636 S32: 0.7159 S33: -0.4909 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL BOND LENGTH RESTRAINTS WERE USED REMARK 3 FOR THE CYS-RU76 COVALENT BOND REMARK 4 REMARK 4 8PT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292131860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : 1.000 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37729 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.26100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 0.1 M HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.79000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.84000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.84000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.79000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 SER A 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 175 CG OD1 OD2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 HIS A 178 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 179 CG OD1 OD2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 ASP A 332 CG OD1 OD2 REMARK 470 ASP A 337 CG OD1 OD2 REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 633 O HOH A 708 2.17 REMARK 500 O HOH A 602 O HOH A 698 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 148 -5.14 76.07 REMARK 500 ASP A 149 39.21 -141.81 REMARK 500 ASP A 167 64.08 73.39 REMARK 500 ASP A 175 63.56 -165.34 REMARK 500 LEU A 184 99.25 -60.91 REMARK 500 LEU A 294 57.93 -94.59 REMARK 500 LEU A 294 59.44 -94.59 REMARK 500 ASP A 318 88.92 -156.76 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PT1 A 1 360 UNP P28482 MK01_HUMAN 1 360 SEQADV 8PT1 GLY A -3 UNP P28482 EXPRESSION TAG SEQADV 8PT1 SER A -2 UNP P28482 EXPRESSION TAG SEQADV 8PT1 ALA A -1 UNP P28482 EXPRESSION TAG SEQADV 8PT1 SER A 0 UNP P28482 EXPRESSION TAG SEQRES 1 A 364 GLY SER ALA SER MET ALA ALA ALA ALA ALA ALA GLY ALA SEQRES 2 A 364 GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY SEQRES 3 A 364 PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA SEQRES 4 A 364 TYR GLY MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS SEQRES 5 A 364 VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS SEQRES 6 A 364 GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE SEQRES 7 A 364 LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN SEQRES 8 A 364 ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP SEQRES 9 A 364 VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR SEQRES 10 A 364 LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS ILE SEQRES 11 A 364 CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR SEQRES 12 A 364 ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO SEQRES 13 A 364 SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE SEQRES 14 A 364 CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS SEQRES 15 A 364 ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG SEQRES 16 A 364 TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY SEQRES 17 A 364 TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE SEQRES 18 A 364 LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY SEQRES 19 A 364 LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE SEQRES 20 A 364 LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE SEQRES 21 A 364 ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS SEQRES 22 A 364 LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA SEQRES 23 A 364 ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR SEQRES 24 A 364 PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU SEQRES 25 A 364 ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP SEQRES 26 A 364 GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU SEQRES 27 A 364 LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE SEQRES 28 A 364 PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER HET ANP A 401 31 HET E2A A 402 22 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM E2A ~{O}1-METHYL ~{O}3-(PHENYLMETHYL) (1~{S},3~{R})-1- HETNAM 2 E2A METHYL-4-OXIDANYLIDENE-CYCLOHEXANE-1,3-DICARBOXYLATE FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 E2A FORMUL 4 HOH *214(H2 O) HELIX 1 AA1 HIS A 61 PHE A 78 1 18 HELIX 2 AA2 LEU A 112 GLN A 119 1 8 HELIX 3 AA3 SER A 122 ALA A 143 1 22 HELIX 4 AA4 LYS A 151 SER A 153 5 3 HELIX 5 AA5 ALA A 195 ASN A 201 1 7 HELIX 6 AA6 LYS A 207 ASN A 224 1 18 HELIX 7 AA7 HIS A 232 GLY A 245 1 14 HELIX 8 AA8 SER A 248 CYS A 254 1 7 HELIX 9 AA9 ASN A 257 SER A 266 1 10 HELIX 10 AB1 PRO A 274 PHE A 279 1 6 HELIX 11 AB2 ASP A 283 LEU A 294 1 12 HELIX 12 AB3 GLU A 303 ALA A 309 1 7 HELIX 13 AB4 HIS A 310 GLU A 314 5 5 HELIX 14 AB5 ASP A 318 GLU A 322 5 5 HELIX 15 AB6 PRO A 339 ALA A 352 1 14 HELIX 16 AB7 ARG A 353 GLN A 355 5 3 SHEET 1 AA1 2 GLU A 12 VAL A 14 0 SHEET 2 AA1 2 GLN A 17 PHE A 19 -1 O PHE A 19 N GLU A 12 SHEET 1 AA2 5 TYR A 25 GLU A 33 0 SHEET 2 AA2 5 MET A 38 ASP A 44 -1 O VAL A 39 N GLY A 32 SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O VAL A 49 N ASP A 44 SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O GLN A 105 N ALA A 52 SHEET 5 AA2 5 ILE A 86 ILE A 90 -1 N ASN A 87 O VAL A 104 SHEET 1 AA3 3 THR A 110 ASP A 111 0 SHEET 2 AA3 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110 SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AA4 2 VAL A 145 LEU A 146 0 SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 LINK SG CYS A 161 C3 E2A A 402 1555 1555 1.78 CISPEP 1 GLY A 22 PRO A 23 0 3.88 CRYST1 41.580 77.150 123.680 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012962 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008085 0.00000