HEADER SIGNALING PROTEIN 13-JUL-23 8PT3
TITLE ERK2 COVELENTLY BOUND TO RU77 CYCLOHEXENONE BASED INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: MAP KINASE 1,MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED
COMPND 5 KINASE 2,ERK-2,MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED
COMPND 6 PROTEIN KINASE 2,MAP KINASE 2,MAPK 2;
COMPND 7 EC: 2.7.11.24;
COMPND 8 ENGINEERED: YES;
COMPND 9 OTHER_DETAILS: THE DEPHOSPHORYLATED INACTIVE ERK2 KINASE WITH RU77
COMPND 10 COVALENT INHIBITOR AT THE DOCKING GROOVE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS MAPK KINASE, MAPK, INHIBITOR, COVALENT, ERK2, SIGNALING PROTEIN,
KEYWDS 2 MICHAEL ACCEPTOR WARHEAD
EXPDTA X-RAY DIFFRACTION
AUTHOR P.SOK,A.POTI,A.REMENYI
REVDAT 2 16-OCT-24 8PT3 1 JRNL
REVDAT 1 24-JUL-24 8PT3 0
JRNL AUTH A.L.POTI,D.BALINT,A.ALEXA,P.SOK,K.OZSVATH,K.ALBERT,
JRNL AUTH 2 G.TURCZEL,S.MAGYARI,O.EMBER,K.PAPP,S.B.KIRALY,T.IMRE,
JRNL AUTH 3 K.NEMETH,T.KURTAN,G.GOGL,S.VARGA,T.SOOS,A.REMENYI
JRNL TITL TARGETING A KEY PROTEIN-PROTEIN INTERACTION SURFACE ON
JRNL TITL 2 MITOGEN-ACTIVATED PROTEIN KINASES BY A PRECISION-GUIDED
JRNL TITL 3 WARHEAD SCAFFOLD.
JRNL REF NAT COMMUN V. 15 8607 2024
JRNL REFN ESSN 2041-1723
JRNL PMID 39366929
JRNL DOI 10.1038/S41467-024-52574-1
REMARK 2
REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.20.1
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 38411
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.189
REMARK 3 R VALUE (WORKING SET) : 0.187
REMARK 3 FREE R VALUE : 0.222
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210
REMARK 3 FREE R VALUE TEST SET COUNT : 2000
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 4.3400 - 3.4400 1.00 2659 146 0.1576 0.1927
REMARK 3 2 3.4400 - 3.0100 1.00 2624 144 0.1924 0.2255
REMARK 3 3 3.0100 - 2.7300 1.00 2637 144 0.2037 0.2184
REMARK 3 4 2.7300 - 2.5400 1.00 2576 142 0.2036 0.2439
REMARK 3 5 2.5400 - 2.3900 1.00 2608 144 0.2075 0.2693
REMARK 3 6 2.3900 - 2.2700 1.00 2580 141 0.1944 0.2358
REMARK 3 7 2.2700 - 2.1700 1.00 2553 140 0.1912 0.2385
REMARK 3 8 2.1700 - 2.0900 1.00 2582 142 0.1925 0.2459
REMARK 3 9 2.0900 - 2.0100 1.00 2549 140 0.1957 0.2545
REMARK 3 10 2.0100 - 1.9500 1.00 2576 142 0.2222 0.2565
REMARK 3 11 1.9500 - 1.8900 1.00 2558 140 0.2419 0.2708
REMARK 3 12 1.8900 - 1.8500 1.00 2567 142 0.2519 0.3087
REMARK 3 13 1.8500 - 1.8000 1.00 2546 139 0.2664 0.2944
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.400
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 61 )
REMARK 3 ORIGIN FOR THE GROUP (A): -22.6948 -12.3130 2.6470
REMARK 3 T TENSOR
REMARK 3 T11: 0.1939 T22: 0.3775
REMARK 3 T33: 0.2538 T12: 0.0516
REMARK 3 T13: -0.0153 T23: -0.0189
REMARK 3 L TENSOR
REMARK 3 L11: 3.3761 L22: 4.1055
REMARK 3 L33: 2.2107 L12: 1.8803
REMARK 3 L13: 0.3909 L23: 1.9657
REMARK 3 S TENSOR
REMARK 3 S11: 0.0778 S12: 0.0750 S13: 0.1379
REMARK 3 S21: -0.1465 S22: -0.2723 S23: 0.5340
REMARK 3 S31: -0.3125 S32: -0.4613 S33: 0.2099
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 162 )
REMARK 3 ORIGIN FOR THE GROUP (A): -15.0952 -16.8760 16.8290
REMARK 3 T TENSOR
REMARK 3 T11: 0.2191 T22: 0.2445
REMARK 3 T33: 0.2848 T12: 0.0136
REMARK 3 T13: -0.0174 T23: -0.0359
REMARK 3 L TENSOR
REMARK 3 L11: 1.1103 L22: 2.2475
REMARK 3 L33: 3.2485 L12: 0.2768
REMARK 3 L13: -0.4768 L23: -0.7079
REMARK 3 S TENSOR
REMARK 3 S11: 0.0722 S12: 0.0019 S13: -0.0755
REMARK 3 S21: 0.1738 S22: -0.0305 S23: -0.0309
REMARK 3 S31: 0.0862 S32: 0.0681 S33: -0.0334
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 186 )
REMARK 3 ORIGIN FOR THE GROUP (A): -10.1408 -9.1759 23.0480
REMARK 3 T TENSOR
REMARK 3 T11: 0.3673 T22: 0.3347
REMARK 3 T33: 0.3678 T12: -0.0520
REMARK 3 T13: -0.0542 T23: 0.0006
REMARK 3 L TENSOR
REMARK 3 L11: 5.5019 L22: 2.4055
REMARK 3 L33: 5.7219 L12: -0.2590
REMARK 3 L13: -0.0108 L23: 1.4193
REMARK 3 S TENSOR
REMARK 3 S11: 0.0271 S12: -0.2349 S13: 0.6693
REMARK 3 S21: 0.2466 S22: -0.0858 S23: -0.2652
REMARK 3 S31: -0.6602 S32: 0.4308 S33: 0.1262
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 303 )
REMARK 3 ORIGIN FOR THE GROUP (A): -17.4961 -12.1207 39.9096
REMARK 3 T TENSOR
REMARK 3 T11: 0.4567 T22: 0.2831
REMARK 3 T33: 0.2550 T12: -0.0495
REMARK 3 T13: 0.0130 T23: -0.0045
REMARK 3 L TENSOR
REMARK 3 L11: 2.5161 L22: 2.8137
REMARK 3 L33: 3.5724 L12: -0.5093
REMARK 3 L13: 0.6259 L23: 1.2698
REMARK 3 S TENSOR
REMARK 3 S11: -0.0434 S12: -0.2495 S13: 0.2170
REMARK 3 S21: 0.5702 S22: -0.0124 S23: -0.0126
REMARK 3 S31: 0.1273 S32: 0.1462 S33: 0.0494
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 358 )
REMARK 3 ORIGIN FOR THE GROUP (A): -5.4182 -14.5082 18.2333
REMARK 3 T TENSOR
REMARK 3 T11: 0.2532 T22: 0.3442
REMARK 3 T33: 0.3797 T12: 0.0539
REMARK 3 T13: -0.0344 T23: -0.0349
REMARK 3 L TENSOR
REMARK 3 L11: 1.0707 L22: 4.1454
REMARK 3 L33: 4.8669 L12: 0.4210
REMARK 3 L13: -0.2075 L23: -3.1846
REMARK 3 S TENSOR
REMARK 3 S11: 0.0081 S12: -0.0624 S13: -0.0421
REMARK 3 S21: 0.4819 S22: -0.2357 S23: -0.5761
REMARK 3 S31: -0.2267 S32: 0.6582 S33: 0.2618
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 359 THROUGH 359 )
REMARK 3 ORIGIN FOR THE GROUP (A): 3.6390 -7.4688 -1.8032
REMARK 3 T TENSOR
REMARK 3 T11: 0.5366 T22: 1.1331
REMARK 3 T33: 2.1238 T12: -0.1052
REMARK 3 T13: 0.0322 T23: 0.0494
REMARK 3 L TENSOR
REMARK 3 L11: 8.9200 L22: 2.7907
REMARK 3 L33: 5.3451 L12: 0.3342
REMARK 3 L13: 2.5982 L23: -3.4726
REMARK 3 S TENSOR
REMARK 3 S11: -1.2737 S12: 2.6846 S13: 0.0555
REMARK 3 S21: -0.1715 S22: 0.3858 S23: 0.2603
REMARK 3 S31: 0.1911 S32: 0.3893 S33: 0.9382
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: IDEAL BOND LENGTH RESTRAINTS WERE USED
REMARK 3 FOR THE HIS125-RU77 COVALENT BOND
REMARK 4
REMARK 4 8PT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-23.
REMARK 100 THE DEPOSITION ID IS D_1292131873.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-DEC-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY
REMARK 200 BEAMLINE : P14 (MX2)
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.976300
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38481
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800
REMARK 200 RESOLUTION RANGE LOW (A) : 48.340
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 13.30
REMARK 200 R MERGE (I) : 0.06500
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : 13.20
REMARK 200 R MERGE FOR SHELL (I) : 2.15100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: RHOMBOID
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.70
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 0.1 M TRIS PH 8.5, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.96850
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.37200
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.23550
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.37200
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.96850
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.23550
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -3
REMARK 465 SER A -2
REMARK 465 ALA A -1
REMARK 465 SER A 0
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 ALA A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 ALA A 7
REMARK 465 GLY A 8
REMARK 465 ALA A 9
REMARK 465 ASP A 177
REMARK 465 HIS A 178
REMARK 465 ASP A 179
REMARK 465 HIS A 180
REMARK 465 THR A 181
REMARK 465 GLY A 182
REMARK 465 SER A 360
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 PHE A 183 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 203 CG CD CE NZ
REMARK 470 LYS A 231 CG CD CE NZ
REMARK 470 GLU A 326 CD OE1 OE2
REMARK 470 ASP A 332 CG OD1 OD2
REMARK 470 GLU A 349 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 TYR A 36 32.00 -140.84
REMARK 500 ARG A 148 -2.53 77.79
REMARK 500 ASP A 149 40.08 -140.57
REMARK 500 ASP A 167 82.09 60.24
REMARK 500 ASP A 175 85.75 -161.95
REMARK 500 LYS A 203 57.95 37.62
REMARK 500 TYR A 205 47.71 -105.99
REMARK 500 LEU A 294 53.79 -92.93
REMARK 500 ASP A 318 86.34 -156.81
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8PT3 A 1 360 UNP P28482 MK01_HUMAN 1 360
SEQADV 8PT3 GLY A -3 UNP P28482 EXPRESSION TAG
SEQADV 8PT3 SER A -2 UNP P28482 EXPRESSION TAG
SEQADV 8PT3 ALA A -1 UNP P28482 EXPRESSION TAG
SEQADV 8PT3 SER A 0 UNP P28482 EXPRESSION TAG
SEQRES 1 A 364 GLY SER ALA SER MET ALA ALA ALA ALA ALA ALA GLY ALA
SEQRES 2 A 364 GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY
SEQRES 3 A 364 PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA
SEQRES 4 A 364 TYR GLY MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS
SEQRES 5 A 364 VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS
SEQRES 6 A 364 GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE
SEQRES 7 A 364 LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN
SEQRES 8 A 364 ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP
SEQRES 9 A 364 VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR
SEQRES 10 A 364 LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS ILE
SEQRES 11 A 364 CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR
SEQRES 12 A 364 ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO
SEQRES 13 A 364 SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE
SEQRES 14 A 364 CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS
SEQRES 15 A 364 ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG
SEQRES 16 A 364 TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY
SEQRES 17 A 364 TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE
SEQRES 18 A 364 LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY
SEQRES 19 A 364 LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE
SEQRES 20 A 364 LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE
SEQRES 21 A 364 ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS
SEQRES 22 A 364 LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA
SEQRES 23 A 364 ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR
SEQRES 24 A 364 PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU
SEQRES 25 A 364 ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP
SEQRES 26 A 364 GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU
SEQRES 27 A 364 LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE
SEQRES 28 A 364 PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER
HET D7O A 401 21
HET GOL A 402 14
HET GOL A 403 14
HET GOL A 404 14
HET ANP A 405 44
HETNAM D7O ~{O}3-~{TERT}-BUTYL ~{O}1-METHYL (1~{S},3~{S},5~{R})-6-
HETNAM 2 D7O METHYLIDENE-4-OXIDANYLIDENE-BICYCLO[3.2.1]OCTANE-1,3-
HETNAM 3 D7O DICARBOXYLATE
HETNAM GOL GLYCEROL
HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 D7O C16 H22 O5
FORMUL 3 GOL 3(C3 H8 O3)
FORMUL 6 ANP C10 H17 N6 O12 P3
FORMUL 7 HOH *152(H2 O)
HELIX 1 AA1 HIS A 61 PHE A 78 1 18
HELIX 2 AA2 LEU A 112 GLN A 119 1 8
HELIX 3 AA3 SER A 122 ALA A 143 1 22
HELIX 4 AA4 LYS A 151 SER A 153 5 3
HELIX 5 AA5 ALA A 195 LEU A 200 1 6
HELIX 6 AA6 LYS A 207 ASN A 224 1 18
HELIX 7 AA7 HIS A 232 GLY A 245 1 14
HELIX 8 AA8 SER A 248 CYS A 254 1 7
HELIX 9 AA9 ASN A 257 SER A 266 1 10
HELIX 10 AB1 PRO A 274 PHE A 279 1 6
HELIX 11 AB2 ASP A 283 LEU A 294 1 12
HELIX 12 AB3 GLU A 303 ALA A 309 1 7
HELIX 13 AB4 HIS A 310 GLU A 314 5 5
HELIX 14 AB5 ASP A 318 GLU A 322 5 5
HELIX 15 AB6 PRO A 339 ALA A 352 1 14
HELIX 16 AB7 ARG A 353 GLN A 355 5 3
SHEET 1 AA1 2 MET A 13 VAL A 14 0
SHEET 2 AA1 2 GLN A 17 VAL A 18 -1 O GLN A 17 N VAL A 14
SHEET 1 AA2 5 TYR A 25 GLY A 34 0
SHEET 2 AA2 5 GLY A 37 ASP A 44 -1 O VAL A 39 N GLY A 32
SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O ILE A 53 N CYS A 40
SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O VAL A 101 N ILE A 56
SHEET 5 AA2 5 ASP A 88 ILE A 90 -1 N ASP A 88 O VAL A 104
SHEET 1 AA3 3 THR A 110 ASP A 111 0
SHEET 2 AA3 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110
SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156
SHEET 1 AA4 2 VAL A 145 LEU A 146 0
SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146
LINK NE2 HIS A 125 C3 D7O A 401 1555 1555 1.55
CISPEP 1 GLY A 22 PRO A 23 0 -2.37
CRYST1 41.937 78.471 122.744 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.023845 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012744 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008147 0.00000