HEADER SIGNALING PROTEIN 13-JUL-23 8PT5
TITLE ERK2 COVELENTLY BOUND TO RU187 CYCLOHEXENONE BASED INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: MAP KINASE 1,MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED
COMPND 5 KINASE 2,ERK-2,MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED
COMPND 6 PROTEIN KINASE 2,MAP KINASE 2,MAPK 2;
COMPND 7 EC: 2.7.11.24;
COMPND 8 ENGINEERED: YES;
COMPND 9 OTHER_DETAILS: THE DEPHOSPHORYLATED INACTIVE ERK2 KINASE WITH RU187
COMPND 10 COVALENT INHIBITOR AT THE DOCKING GROOVE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS MAPK KINASE, MAPK, INHIBITOR, COVALENT, ERK2, SIGNALING PROTEIN,
KEYWDS 2 MICHAEL ACCEPTOR WARHEAD
EXPDTA X-RAY DIFFRACTION
AUTHOR P.SOK,A.POTI,A.REMENYI
REVDAT 2 16-OCT-24 8PT5 1 JRNL
REVDAT 1 24-JUL-24 8PT5 0
JRNL AUTH A.L.POTI,D.BALINT,A.ALEXA,P.SOK,K.OZSVATH,K.ALBERT,
JRNL AUTH 2 G.TURCZEL,S.MAGYARI,O.EMBER,K.PAPP,S.B.KIRALY,T.IMRE,
JRNL AUTH 3 K.NEMETH,T.KURTAN,G.GOGL,S.VARGA,T.SOOS,A.REMENYI
JRNL TITL TARGETING A KEY PROTEIN-PROTEIN INTERACTION SURFACE ON
JRNL TITL 2 MITOGEN-ACTIVATED PROTEIN KINASES BY A PRECISION-GUIDED
JRNL TITL 3 WARHEAD SCAFFOLD.
JRNL REF NAT COMMUN V. 15 8607 2024
JRNL REFN ESSN 2041-1723
JRNL PMID 39366929
JRNL DOI 10.1038/S41467-024-52574-1
REMARK 2
REMARK 2 RESOLUTION. 1.95 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.20.1
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.66
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 29520
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.206
REMARK 3 R VALUE (WORKING SET) : 0.204
REMARK 3 FREE R VALUE : 0.235
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.770
REMARK 3 FREE R VALUE TEST SET COUNT : 1999
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 4.7000 - 3.7300 1.00 2012 147 0.1627 0.1958
REMARK 3 2 3.7300 - 3.2600 1.00 1999 145 0.1863 0.2082
REMARK 3 3 3.2600 - 2.9600 1.00 1957 142 0.2205 0.2657
REMARK 3 4 2.9600 - 2.7500 1.00 1963 142 0.2119 0.2698
REMARK 3 5 2.7500 - 2.5900 1.00 1960 142 0.2079 0.2515
REMARK 3 6 2.5900 - 2.4600 1.00 1940 141 0.2199 0.2713
REMARK 3 7 2.4600 - 2.3500 1.00 1971 143 0.2350 0.2859
REMARK 3 8 2.3500 - 2.2600 1.00 1927 141 0.2380 0.3040
REMARK 3 9 2.2600 - 2.1800 1.00 1921 139 0.2372 0.2879
REMARK 3 10 2.1800 - 2.1100 1.00 1973 143 0.2528 0.2576
REMARK 3 11 2.1100 - 2.0500 1.00 1917 139 0.2709 0.3269
REMARK 3 12 2.0500 - 2.0000 1.00 1941 141 0.3024 0.3519
REMARK 3 13 2.0000 - 1.9500 1.00 1916 140 0.3642 0.3942
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.810
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 61 )
REMARK 3 ORIGIN FOR THE GROUP (A): -21.7604 -12.1487 2.9902
REMARK 3 T TENSOR
REMARK 3 T11: 0.2549 T22: 0.3897
REMARK 3 T33: 0.3195 T12: 0.0474
REMARK 3 T13: 0.0031 T23: -0.0394
REMARK 3 L TENSOR
REMARK 3 L11: 2.6914 L22: 2.0928
REMARK 3 L33: 3.7962 L12: 2.0647
REMARK 3 L13: 0.7008 L23: 1.1354
REMARK 3 S TENSOR
REMARK 3 S11: 0.1103 S12: 0.1429 S13: 0.1244
REMARK 3 S21: -0.0914 S22: -0.3049 S23: 0.5306
REMARK 3 S31: -0.4927 S32: -0.6982 S33: 0.2132
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 162 )
REMARK 3 ORIGIN FOR THE GROUP (A): -13.9749 -16.5528 16.8018
REMARK 3 T TENSOR
REMARK 3 T11: 0.2199 T22: 0.2837
REMARK 3 T33: 0.2980 T12: -0.0064
REMARK 3 T13: -0.0213 T23: -0.0505
REMARK 3 L TENSOR
REMARK 3 L11: 1.0277 L22: 3.4795
REMARK 3 L33: 5.2920 L12: -0.0321
REMARK 3 L13: -0.3331 L23: -1.4370
REMARK 3 S TENSOR
REMARK 3 S11: 0.0863 S12: -0.0994 S13: -0.0386
REMARK 3 S21: 0.1331 S22: -0.0627 S23: -0.2004
REMARK 3 S31: 0.1108 S32: 0.2411 S33: -0.0155
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 223 )
REMARK 3 ORIGIN FOR THE GROUP (A): -14.8131 -11.1781 29.3850
REMARK 3 T TENSOR
REMARK 3 T11: 0.4622 T22: 0.3719
REMARK 3 T33: 0.3909 T12: -0.0859
REMARK 3 T13: -0.0179 T23: -0.0116
REMARK 3 L TENSOR
REMARK 3 L11: 4.2998 L22: 1.2805
REMARK 3 L33: 5.1902 L12: 0.0167
REMARK 3 L13: -2.0299 L23: 0.1330
REMARK 3 S TENSOR
REMARK 3 S11: 0.2144 S12: -0.1409 S13: 0.7750
REMARK 3 S21: 0.4123 S22: 0.0591 S23: -0.0773
REMARK 3 S31: -0.6327 S32: 0.4800 S33: -0.2277
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 266 )
REMARK 3 ORIGIN FOR THE GROUP (A): -18.7597 -6.2901 42.5881
REMARK 3 T TENSOR
REMARK 3 T11: 0.7505 T22: 0.3713
REMARK 3 T33: 0.3896 T12: -0.0698
REMARK 3 T13: 0.0383 T23: -0.0684
REMARK 3 L TENSOR
REMARK 3 L11: 1.5530 L22: 3.2689
REMARK 3 L33: 3.3131 L12: -0.7628
REMARK 3 L13: 0.2834 L23: 0.9025
REMARK 3 S TENSOR
REMARK 3 S11: -0.1669 S12: -0.2336 S13: 0.2907
REMARK 3 S21: 0.2424 S22: 0.1585 S23: -0.3185
REMARK 3 S31: -0.3992 S32: 0.1388 S33: 0.0312
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 339 )
REMARK 3 ORIGIN FOR THE GROUP (A): -11.4741 -20.5254 35.8897
REMARK 3 T TENSOR
REMARK 3 T11: 0.4549 T22: 0.4279
REMARK 3 T33: 0.3161 T12: 0.0346
REMARK 3 T13: -0.0916 T23: 0.0291
REMARK 3 L TENSOR
REMARK 3 L11: 1.1587 L22: 2.5036
REMARK 3 L33: 3.2892 L12: -0.1001
REMARK 3 L13: -0.6613 L23: 0.2020
REMARK 3 S TENSOR
REMARK 3 S11: -0.0614 S12: -0.2737 S13: -0.0392
REMARK 3 S21: 0.4653 S22: 0.0338 S23: -0.2365
REMARK 3 S31: 0.2089 S32: 0.6556 S33: 0.0333
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 358 )
REMARK 3 ORIGIN FOR THE GROUP (A): -5.3689 -2.3812 3.7307
REMARK 3 T TENSOR
REMARK 3 T11: 0.4349 T22: 0.3849
REMARK 3 T33: 0.4736 T12: -0.1324
REMARK 3 T13: 0.1537 T23: -0.0563
REMARK 3 L TENSOR
REMARK 3 L11: 3.7437 L22: 7.9880
REMARK 3 L33: 5.5596 L12: 0.1477
REMARK 3 L13: 2.6074 L23: 1.8636
REMARK 3 S TENSOR
REMARK 3 S11: 0.1724 S12: 0.4190 S13: -0.0707
REMARK 3 S21: -0.6435 S22: 0.2702 S23: -0.9886
REMARK 3 S31: -1.1450 S32: 1.0865 S33: -0.4209
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: IDEAL BOND LENGTH RESTRAINTS WERE USED
REMARK 3 FOR THE CYS-RU67 AND HIS-RU187 COVALENT BOND
REMARK 4
REMARK 4 8PT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-23.
REMARK 100 THE DEPOSITION ID IS D_1292131890.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-DEC-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY
REMARK 200 BEAMLINE : P14 (MX2)
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29603
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950
REMARK 200 RESOLUTION RANGE LOW (A) : 76.840
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 13.40
REMARK 200 R MERGE (I) : 0.13000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : 13.70
REMARK 200 R MERGE FOR SHELL (I) : 3.42800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: RHOMBOID
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.30
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 0.1 M NA-CITRATE PH 5.5,
REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.72100
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.66100
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.41800
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.66100
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.72100
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.41800
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -3
REMARK 465 SER A -2
REMARK 465 ALA A -1
REMARK 465 SER A 0
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 ALA A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 ALA A 7
REMARK 465 GLY A 8
REMARK 465 ALA A 9
REMARK 465 ASP A 175
REMARK 465 PRO A 176
REMARK 465 ASP A 177
REMARK 465 HIS A 178
REMARK 465 ASP A 179
REMARK 465 HIS A 180
REMARK 465 THR A 181
REMARK 465 GLY A 182
REMARK 465 PHE A 183
REMARK 465 LEU A 184
REMARK 465 PHE A 331
REMARK 465 ASP A 332
REMARK 465 MET A 333
REMARK 465 ARG A 359
REMARK 465 SER A 360
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 109 CG CD OE1 OE2
REMARK 470 LYS A 117 CE NZ
REMARK 470 GLU A 186 CG CD OE1 OE2
REMARK 470 ARG A 191 CD NE CZ NH1 NH2
REMARK 470 ASN A 201 CG OD1 ND2
REMARK 470 LYS A 203 CG CD CE NZ
REMARK 470 LYS A 231 CE NZ
REMARK 470 ILE A 256 CG1 CG2 CD1
REMARK 470 LEU A 258 CG CD1 CD2
REMARK 470 GLU A 326 CG CD OE1 OE2
REMARK 470 LYS A 330 CG CD CE NZ
REMARK 470 ASP A 336 CG OD1 OD2
REMARK 470 ASP A 337 CG OD1 OD2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 149 38.65 -146.89
REMARK 500 ASP A 167 62.86 60.19
REMARK 500 LEU A 294 58.07 -92.90
REMARK 500 ASP A 318 87.89 -158.05
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8PT5 A 1 360 UNP P28482 MK01_HUMAN 1 360
SEQADV 8PT5 GLY A -3 UNP P28482 EXPRESSION TAG
SEQADV 8PT5 SER A -2 UNP P28482 EXPRESSION TAG
SEQADV 8PT5 ALA A -1 UNP P28482 EXPRESSION TAG
SEQADV 8PT5 SER A 0 UNP P28482 EXPRESSION TAG
SEQRES 1 A 364 GLY SER ALA SER MET ALA ALA ALA ALA ALA ALA GLY ALA
SEQRES 2 A 364 GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY
SEQRES 3 A 364 PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA
SEQRES 4 A 364 TYR GLY MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS
SEQRES 5 A 364 VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS
SEQRES 6 A 364 GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE
SEQRES 7 A 364 LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN
SEQRES 8 A 364 ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP
SEQRES 9 A 364 VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR
SEQRES 10 A 364 LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS ILE
SEQRES 11 A 364 CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR
SEQRES 12 A 364 ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO
SEQRES 13 A 364 SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE
SEQRES 14 A 364 CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS
SEQRES 15 A 364 ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG
SEQRES 16 A 364 TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY
SEQRES 17 A 364 TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE
SEQRES 18 A 364 LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY
SEQRES 19 A 364 LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE
SEQRES 20 A 364 LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE
SEQRES 21 A 364 ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS
SEQRES 22 A 364 LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA
SEQRES 23 A 364 ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR
SEQRES 24 A 364 PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU
SEQRES 25 A 364 ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP
SEQRES 26 A 364 GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU
SEQRES 27 A 364 LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE
SEQRES 28 A 364 PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER
HET ANP A 401 31
HET D5R A 402 38
HET GOL A 403 6
HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
HETNAM D5R ~{O}3-~{TERT}-BUTYL ~{O}1-METHYL (1~{S},3~{R})-1-
HETNAM 2 D5R METHYL-4-OXIDANYLIDENE-CYCLOHEXANE-1,3-DICARBOXYLATE
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 ANP C10 H17 N6 O12 P3
FORMUL 3 D5R C14 H22 O5
FORMUL 4 GOL C3 H8 O3
FORMUL 5 HOH *86(H2 O)
HELIX 1 AA1 HIS A 61 PHE A 78 1 18
HELIX 2 AA2 LEU A 112 GLN A 119 1 8
HELIX 3 AA3 SER A 122 ALA A 143 1 22
HELIX 4 AA4 LYS A 151 SER A 153 5 3
HELIX 5 AA5 ALA A 195 ASN A 201 1 7
HELIX 6 AA6 LYS A 207 ASN A 224 1 18
HELIX 7 AA7 HIS A 232 GLY A 245 1 14
HELIX 8 AA8 SER A 248 CYS A 254 1 7
HELIX 9 AA9 ASN A 257 LEU A 267 1 11
HELIX 10 AB1 PRO A 274 PHE A 279 1 6
HELIX 11 AB2 ASP A 283 LEU A 294 1 12
HELIX 12 AB3 GLU A 303 ALA A 309 1 7
HELIX 13 AB4 HIS A 310 GLU A 314 5 5
HELIX 14 AB5 ASP A 318 GLU A 322 5 5
HELIX 15 AB6 PRO A 339 THR A 351 1 13
HELIX 16 AB7 ALA A 352 GLN A 355 5 4
SHEET 1 AA1 2 MET A 13 VAL A 14 0
SHEET 2 AA1 2 GLN A 17 VAL A 18 -1 O GLN A 17 N VAL A 14
SHEET 1 AA2 5 TYR A 25 GLU A 33 0
SHEET 2 AA2 5 MET A 38 ASP A 44 -1 O TYR A 43 N THR A 26
SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O VAL A 49 N ASP A 44
SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O GLN A 105 N ALA A 52
SHEET 5 AA2 5 ILE A 86 ILE A 90 -1 N ASN A 87 O VAL A 104
SHEET 1 AA3 3 THR A 110 ASP A 111 0
SHEET 2 AA3 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110
SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156
SHEET 1 AA4 2 VAL A 145 LEU A 146 0
SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146
LINK NE2BHIS A 125 C3 BD5R A 402 1555 1555 1.52
LINK SG ACYS A 161 C3 AD5R A 402 1555 1555 1.74
CISPEP 1 GLY A 22 PRO A 23 0 10.31
CRYST1 41.442 76.836 123.322 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.024130 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013015 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008109 0.00000