HEADER SIGNALING PROTEIN 13-JUL-23 8PT5 TITLE ERK2 COVELENTLY BOUND TO RU187 CYCLOHEXENONE BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 1,MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED COMPND 5 KINASE 2,ERK-2,MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED COMPND 6 PROTEIN KINASE 2,MAP KINASE 2,MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE DEPHOSPHORYLATED INACTIVE ERK2 KINASE WITH RU187 COMPND 10 COVALENT INHIBITOR AT THE DOCKING GROOVE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MAPK KINASE, MAPK, INHIBITOR, COVALENT, ERK2, SIGNALING PROTEIN, KEYWDS 2 MICHAEL ACCEPTOR WARHEAD EXPDTA X-RAY DIFFRACTION AUTHOR P.SOK,A.POTI,A.REMENYI REVDAT 2 16-OCT-24 8PT5 1 JRNL REVDAT 1 24-JUL-24 8PT5 0 JRNL AUTH A.L.POTI,D.BALINT,A.ALEXA,P.SOK,K.OZSVATH,K.ALBERT, JRNL AUTH 2 G.TURCZEL,S.MAGYARI,O.EMBER,K.PAPP,S.B.KIRALY,T.IMRE, JRNL AUTH 3 K.NEMETH,T.KURTAN,G.GOGL,S.VARGA,T.SOOS,A.REMENYI JRNL TITL TARGETING A KEY PROTEIN-PROTEIN INTERACTION SURFACE ON JRNL TITL 2 MITOGEN-ACTIVATED PROTEIN KINASES BY A PRECISION-GUIDED JRNL TITL 3 WARHEAD SCAFFOLD. JRNL REF NAT COMMUN V. 15 8607 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39366929 JRNL DOI 10.1038/S41467-024-52574-1 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.7000 - 3.7300 1.00 2012 147 0.1627 0.1958 REMARK 3 2 3.7300 - 3.2600 1.00 1999 145 0.1863 0.2082 REMARK 3 3 3.2600 - 2.9600 1.00 1957 142 0.2205 0.2657 REMARK 3 4 2.9600 - 2.7500 1.00 1963 142 0.2119 0.2698 REMARK 3 5 2.7500 - 2.5900 1.00 1960 142 0.2079 0.2515 REMARK 3 6 2.5900 - 2.4600 1.00 1940 141 0.2199 0.2713 REMARK 3 7 2.4600 - 2.3500 1.00 1971 143 0.2350 0.2859 REMARK 3 8 2.3500 - 2.2600 1.00 1927 141 0.2380 0.3040 REMARK 3 9 2.2600 - 2.1800 1.00 1921 139 0.2372 0.2879 REMARK 3 10 2.1800 - 2.1100 1.00 1973 143 0.2528 0.2576 REMARK 3 11 2.1100 - 2.0500 1.00 1917 139 0.2709 0.3269 REMARK 3 12 2.0500 - 2.0000 1.00 1941 141 0.3024 0.3519 REMARK 3 13 2.0000 - 1.9500 1.00 1916 140 0.3642 0.3942 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7604 -12.1487 2.9902 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.3897 REMARK 3 T33: 0.3195 T12: 0.0474 REMARK 3 T13: 0.0031 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 2.6914 L22: 2.0928 REMARK 3 L33: 3.7962 L12: 2.0647 REMARK 3 L13: 0.7008 L23: 1.1354 REMARK 3 S TENSOR REMARK 3 S11: 0.1103 S12: 0.1429 S13: 0.1244 REMARK 3 S21: -0.0914 S22: -0.3049 S23: 0.5306 REMARK 3 S31: -0.4927 S32: -0.6982 S33: 0.2132 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9749 -16.5528 16.8018 REMARK 3 T TENSOR REMARK 3 T11: 0.2199 T22: 0.2837 REMARK 3 T33: 0.2980 T12: -0.0064 REMARK 3 T13: -0.0213 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 1.0277 L22: 3.4795 REMARK 3 L33: 5.2920 L12: -0.0321 REMARK 3 L13: -0.3331 L23: -1.4370 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: -0.0994 S13: -0.0386 REMARK 3 S21: 0.1331 S22: -0.0627 S23: -0.2004 REMARK 3 S31: 0.1108 S32: 0.2411 S33: -0.0155 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8131 -11.1781 29.3850 REMARK 3 T TENSOR REMARK 3 T11: 0.4622 T22: 0.3719 REMARK 3 T33: 0.3909 T12: -0.0859 REMARK 3 T13: -0.0179 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 4.2998 L22: 1.2805 REMARK 3 L33: 5.1902 L12: 0.0167 REMARK 3 L13: -2.0299 L23: 0.1330 REMARK 3 S TENSOR REMARK 3 S11: 0.2144 S12: -0.1409 S13: 0.7750 REMARK 3 S21: 0.4123 S22: 0.0591 S23: -0.0773 REMARK 3 S31: -0.6327 S32: 0.4800 S33: -0.2277 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7597 -6.2901 42.5881 REMARK 3 T TENSOR REMARK 3 T11: 0.7505 T22: 0.3713 REMARK 3 T33: 0.3896 T12: -0.0698 REMARK 3 T13: 0.0383 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: 1.5530 L22: 3.2689 REMARK 3 L33: 3.3131 L12: -0.7628 REMARK 3 L13: 0.2834 L23: 0.9025 REMARK 3 S TENSOR REMARK 3 S11: -0.1669 S12: -0.2336 S13: 0.2907 REMARK 3 S21: 0.2424 S22: 0.1585 S23: -0.3185 REMARK 3 S31: -0.3992 S32: 0.1388 S33: 0.0312 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4741 -20.5254 35.8897 REMARK 3 T TENSOR REMARK 3 T11: 0.4549 T22: 0.4279 REMARK 3 T33: 0.3161 T12: 0.0346 REMARK 3 T13: -0.0916 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 1.1587 L22: 2.5036 REMARK 3 L33: 3.2892 L12: -0.1001 REMARK 3 L13: -0.6613 L23: 0.2020 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: -0.2737 S13: -0.0392 REMARK 3 S21: 0.4653 S22: 0.0338 S23: -0.2365 REMARK 3 S31: 0.2089 S32: 0.6556 S33: 0.0333 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3689 -2.3812 3.7307 REMARK 3 T TENSOR REMARK 3 T11: 0.4349 T22: 0.3849 REMARK 3 T33: 0.4736 T12: -0.1324 REMARK 3 T13: 0.1537 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 3.7437 L22: 7.9880 REMARK 3 L33: 5.5596 L12: 0.1477 REMARK 3 L13: 2.6074 L23: 1.8636 REMARK 3 S TENSOR REMARK 3 S11: 0.1724 S12: 0.4190 S13: -0.0707 REMARK 3 S21: -0.6435 S22: 0.2702 S23: -0.9886 REMARK 3 S31: -1.1450 S32: 1.0865 S33: -0.4209 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL BOND LENGTH RESTRAINTS WERE USED REMARK 3 FOR THE CYS-RU67 AND HIS-RU187 COVALENT BOND REMARK 4 REMARK 4 8PT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292131890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29603 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 76.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 3.42800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 0.1 M NA-CITRATE PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.72100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.66100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.41800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.66100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.72100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.41800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 ASP A 175 REMARK 465 PRO A 176 REMARK 465 ASP A 177 REMARK 465 HIS A 178 REMARK 465 ASP A 179 REMARK 465 HIS A 180 REMARK 465 THR A 181 REMARK 465 GLY A 182 REMARK 465 PHE A 183 REMARK 465 LEU A 184 REMARK 465 PHE A 331 REMARK 465 ASP A 332 REMARK 465 MET A 333 REMARK 465 ARG A 359 REMARK 465 SER A 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 LYS A 117 CE NZ REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 ARG A 191 CD NE CZ NH1 NH2 REMARK 470 ASN A 201 CG OD1 ND2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 LYS A 231 CE NZ REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 LEU A 258 CG CD1 CD2 REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 ASP A 336 CG OD1 OD2 REMARK 470 ASP A 337 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 149 38.65 -146.89 REMARK 500 ASP A 167 62.86 60.19 REMARK 500 LEU A 294 58.07 -92.90 REMARK 500 ASP A 318 87.89 -158.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PT5 A 1 360 UNP P28482 MK01_HUMAN 1 360 SEQADV 8PT5 GLY A -3 UNP P28482 EXPRESSION TAG SEQADV 8PT5 SER A -2 UNP P28482 EXPRESSION TAG SEQADV 8PT5 ALA A -1 UNP P28482 EXPRESSION TAG SEQADV 8PT5 SER A 0 UNP P28482 EXPRESSION TAG SEQRES 1 A 364 GLY SER ALA SER MET ALA ALA ALA ALA ALA ALA GLY ALA SEQRES 2 A 364 GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY SEQRES 3 A 364 PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA SEQRES 4 A 364 TYR GLY MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS SEQRES 5 A 364 VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS SEQRES 6 A 364 GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE SEQRES 7 A 364 LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN SEQRES 8 A 364 ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP SEQRES 9 A 364 VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR SEQRES 10 A 364 LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS ILE SEQRES 11 A 364 CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR SEQRES 12 A 364 ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO SEQRES 13 A 364 SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE SEQRES 14 A 364 CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS SEQRES 15 A 364 ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG SEQRES 16 A 364 TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY SEQRES 17 A 364 TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE SEQRES 18 A 364 LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY SEQRES 19 A 364 LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE SEQRES 20 A 364 LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE SEQRES 21 A 364 ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS SEQRES 22 A 364 LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA SEQRES 23 A 364 ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR SEQRES 24 A 364 PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU SEQRES 25 A 364 ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP SEQRES 26 A 364 GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU SEQRES 27 A 364 LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE SEQRES 28 A 364 PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER HET ANP A 401 31 HET D5R A 402 38 HET GOL A 403 6 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM D5R ~{O}3-~{TERT}-BUTYL ~{O}1-METHYL (1~{S},3~{R})-1- HETNAM 2 D5R METHYL-4-OXIDANYLIDENE-CYCLOHEXANE-1,3-DICARBOXYLATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 D5R C14 H22 O5 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *86(H2 O) HELIX 1 AA1 HIS A 61 PHE A 78 1 18 HELIX 2 AA2 LEU A 112 GLN A 119 1 8 HELIX 3 AA3 SER A 122 ALA A 143 1 22 HELIX 4 AA4 LYS A 151 SER A 153 5 3 HELIX 5 AA5 ALA A 195 ASN A 201 1 7 HELIX 6 AA6 LYS A 207 ASN A 224 1 18 HELIX 7 AA7 HIS A 232 GLY A 245 1 14 HELIX 8 AA8 SER A 248 CYS A 254 1 7 HELIX 9 AA9 ASN A 257 LEU A 267 1 11 HELIX 10 AB1 PRO A 274 PHE A 279 1 6 HELIX 11 AB2 ASP A 283 LEU A 294 1 12 HELIX 12 AB3 GLU A 303 ALA A 309 1 7 HELIX 13 AB4 HIS A 310 GLU A 314 5 5 HELIX 14 AB5 ASP A 318 GLU A 322 5 5 HELIX 15 AB6 PRO A 339 THR A 351 1 13 HELIX 16 AB7 ALA A 352 GLN A 355 5 4 SHEET 1 AA1 2 MET A 13 VAL A 14 0 SHEET 2 AA1 2 GLN A 17 VAL A 18 -1 O GLN A 17 N VAL A 14 SHEET 1 AA2 5 TYR A 25 GLU A 33 0 SHEET 2 AA2 5 MET A 38 ASP A 44 -1 O TYR A 43 N THR A 26 SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O VAL A 49 N ASP A 44 SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O GLN A 105 N ALA A 52 SHEET 5 AA2 5 ILE A 86 ILE A 90 -1 N ASN A 87 O VAL A 104 SHEET 1 AA3 3 THR A 110 ASP A 111 0 SHEET 2 AA3 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110 SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AA4 2 VAL A 145 LEU A 146 0 SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 LINK NE2BHIS A 125 C3 BD5R A 402 1555 1555 1.52 LINK SG ACYS A 161 C3 AD5R A 402 1555 1555 1.74 CISPEP 1 GLY A 22 PRO A 23 0 10.31 CRYST1 41.442 76.836 123.322 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024130 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008109 0.00000