HEADER TRANSPORT PROTEIN 14-JUL-23 8PTF TITLE THE SURFACE-EXPOSED LIPO-PROTEIN OF BTUG2 IN COMPLEX WITH TITLE 2 CYANOCOBALAMIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: YNCE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT_1490; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS B12, TRANSPORT, SOLUBLE PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.WHITTAKER,J.M.FELICES MARTINEZ,A.GUSKOV,D.J.SLOTBOOM REVDAT 1 24-JUL-24 8PTF 0 JRNL AUTH J.WHITTAKER,A.GUSKOV JRNL TITL THE SURFACE-EXPOSED LIPO-PROTEIN OF BTUG1 IN COMPLEX WITH JRNL TITL 2 CYANOCOBINAMIDE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 29323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1531 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2061 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.98000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : -1.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.230 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.806 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2775 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3789 ; 2.527 ; 1.701 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 7.742 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ; 7.139 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 441 ;15.128 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.184 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2124 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1371 ; 2.575 ; 2.810 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1705 ; 3.706 ; 5.020 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1404 ; 4.165 ; 3.329 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4396 ; 8.909 ;31.840 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292131959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30854 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 45.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE HCL, PH 7.0, REMARK 280 1.4 M SODIUM MALONATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.19100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.19100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.36200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.69550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.36200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.69550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.19100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.36200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.69550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.19100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.36200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.69550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 TYR A 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 109 142.71 -171.67 REMARK 500 GLN A 122 73.49 74.08 REMARK 500 LYS A 130 -124.06 57.08 REMARK 500 THR A 148 -60.47 -97.95 REMARK 500 VAL A 158 -138.73 -114.46 REMARK 500 THR A 189 10.79 -143.47 REMARK 500 ASN A 210 65.02 63.37 REMARK 500 LYS A 276 5.14 51.90 REMARK 500 TYR A 323 -135.61 54.82 REMARK 500 TYR A 325 -3.27 76.61 REMARK 500 ASN A 350 65.65 63.06 REMARK 500 GLN A 362 43.44 -82.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 160 0.12 SIDE CHAIN REMARK 500 ARG A 244 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 622 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 36 OH REMARK 620 2 TYR A 64 OH 103.2 REMARK 620 3 PHE A 102 O 116.8 121.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 411 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 164 OD2 REMARK 620 2 ILE A 214 O 85.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 410 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 227 O REMARK 620 2 ASP A 230 O 109.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 327 O REMARK 620 2 ASN A 350 OD1 116.1 REMARK 620 N 1 DBREF 8PTF A 22 363 UNP Q8A7N4 Q8A7N4_BACTN 39 380 SEQADV 8PTF ASN A 280 UNP Q8A7N4 ILE 297 CONFLICT SEQRES 1 A 342 GLU SER ASN GLY ASP VAL PHE GLU THR GLY THR ALA GLU SEQRES 2 A 342 MET TYR ILE LEU SER GLU GLY LEU PHE ASN GLN ASN ASN SEQRES 3 A 342 SER SER LEU ALA ARG TYR SER PHE ASN ARG GLN ARG CYS SEQRES 4 A 342 THR ASN ASN TYR PHE SER ALA ASN ASN GLN ARG GLY LEU SEQRES 5 A 342 GLY ASP THR ALA ASN ASP ILE ALA ILE TYR GLY ASN LYS SEQRES 6 A 342 ILE TYR VAL VAL VAL ASN VAL SER SER THR VAL GLU VAL SEQRES 7 A 342 ILE ASP PHE PRO THR GLY LYS SER ILE ARG GLN ILE SER SEQRES 8 A 342 MET LEU ARG ASP ASN GLY SER SER ARG GLN PRO ARG ALA SEQRES 9 A 342 ILE ALA PHE ASP LYS ASP LYS ALA TYR ILE CYS SER TYR SEQRES 10 A 342 ASP GLY THR VAL ALA ARG ILE ASP THR THR SER LEU GLU SEQRES 11 A 342 ILE GLU GLU ILE VAL THR VAL GLY ARG ASN ALA GLU ASP SEQRES 12 A 342 ILE CYS VAL GLN ASN GLY LYS LEU TYR VAL SER ASN SER SEQRES 13 A 342 GLY GLY LEU ASP TYR SER GLY PRO GLY VAL ASP THR THR SEQRES 14 A 342 VAL SER VAL ILE ASP ILE THR THR PHE LYS GLU THR LYS SEQRES 15 A 342 LYS ILE GLU VAL GLY PRO ASN PRO GLY LYS ILE LEU PRO SEQRES 16 A 342 GLY LEU GLU GLU ALA VAL TYR VAL VAL THR ARG GLY THR SEQRES 17 A 342 ASP ILE GLU ALA GLY ASP TYR HIS LEU VAL LYS ILE ASP SEQRES 18 A 342 SER ARG THR ASP ALA VAL ALA ILE THR TYR ASP GLU LYS SEQRES 19 A 342 VAL LEU SER PHE ALA ILE ASP GLY PRO ILE ALA TYR LEU SEQRES 20 A 342 TYR THR TYR ASP TYR GLN THR LYS ASP SER ALA ASN LYS SEQRES 21 A 342 VAL PHE ASP LEU ASN ALA GLY THR VAL ILE ARG ASP ASN SEQRES 22 A 342 PHE ILE THR ASP GLY THR ALA ILE GLN THR PRO PHE SER SEQRES 23 A 342 ILE GLN LEU ASN PRO PHE SER GLY ASN ILE TYR ILE THR SEQRES 24 A 342 GLU ALA TYR ASN TYR THR VAL LYS GLY ASP VAL LEU CYS SEQRES 25 A 342 PHE ASN GLN GLN GLY GLN LEU GLN TYR ARG LEU ASN ASP SEQRES 26 A 342 ILE GLY LEU ASN PRO ASN THR VAL VAL PHE SER ASP LYS SEQRES 27 A 342 ALA SER GLN ASN HET CBY A 401 68 HET 3P8 A 402 2 HET 3P8 A 403 2 HET 3P8 A 404 2 HET 3P8 A 405 2 HET 3P8 A 406 2 HET NA A 407 1 HET NA A 408 1 HET NA A 409 1 HET NA A 410 1 HET NA A 411 1 HET NA A 412 1 HETNAM CBY COB(II)INAMIDE HETNAM 3P8 METHYLAMMONIUM ION HETNAM NA SODIUM ION HETSYN 3P8 METHANAMINIUM FORMUL 2 CBY C48 H72 CO N11 O8 1+ FORMUL 3 3P8 5(C H6 N 1+) FORMUL 8 NA 6(NA 1+) FORMUL 14 HOH *122(H2 O) HELIX 1 AA1 ASN A 63 GLN A 70 1 8 HELIX 2 AA2 GLY A 178 TYR A 182 5 5 SHEET 1 AA1 5 SER A 23 ASN A 24 0 SHEET 2 AA1 5 LEU A 340 GLY A 348 -1 O ARG A 343 N ASN A 24 SHEET 3 AA1 5 GLY A 329 PHE A 334 -1 N CYS A 333 O GLN A 341 SHEET 4 AA1 5 ILE A 317 GLU A 321 -1 N ILE A 317 O PHE A 334 SHEET 5 AA1 5 PRO A 305 LEU A 310 -1 N GLN A 309 O TYR A 318 SHEET 1 AA2 4 ARG A 59 THR A 61 0 SHEET 2 AA2 4 SER A 49 SER A 54 -1 N ARG A 52 O THR A 61 SHEET 3 AA2 4 GLU A 34 SER A 39 -1 N SER A 39 O SER A 49 SHEET 4 AA2 4 PRO A 351 SER A 357 -1 O SER A 357 N GLU A 34 SHEET 1 AA3 4 ALA A 77 TYR A 83 0 SHEET 2 AA3 4 LYS A 86 VAL A 91 -1 O LYS A 86 N TYR A 83 SHEET 3 AA3 4 THR A 96 ASP A 101 -1 O THR A 96 N VAL A 91 SHEET 4 AA3 4 SER A 107 SER A 112 -1 O ARG A 109 N VAL A 99 SHEET 1 AA4 4 PRO A 123 ASP A 129 0 SHEET 2 AA4 4 LYS A 132 SER A 137 -1 O CYS A 136 N ARG A 124 SHEET 3 AA4 4 THR A 141 ASP A 146 -1 O ILE A 145 N ALA A 133 SHEET 4 AA4 4 ILE A 152 THR A 157 -1 O GLU A 153 N ARG A 144 SHEET 1 AA5 4 CYS A 166 GLN A 168 0 SHEET 2 AA5 4 LYS A 171 ASN A 176 -1 O TYR A 173 N CYS A 166 SHEET 3 AA5 4 THR A 190 ASP A 195 -1 O SER A 192 N VAL A 174 SHEET 4 AA5 4 LYS A 200 GLU A 206 -1 O ILE A 205 N VAL A 191 SHEET 1 AA6 4 PRO A 211 PRO A 216 0 SHEET 2 AA6 4 ALA A 221 THR A 226 -1 O TYR A 223 N LEU A 215 SHEET 3 AA6 4 HIS A 237 ASP A 242 -1 O ILE A 241 N VAL A 222 SHEET 4 AA6 4 ALA A 247 THR A 251 -1 O ILE A 250 N LYS A 240 SHEET 1 AA7 4 SER A 258 ASP A 262 0 SHEET 2 AA7 4 ILE A 265 TYR A 271 -1 O ILE A 265 N ASP A 262 SHEET 3 AA7 4 SER A 278 ASP A 284 -1 O LYS A 281 N LEU A 268 SHEET 4 AA7 4 THR A 289 ARG A 292 -1 O THR A 289 N ASP A 284 LINK OH TYR A 36 NA NA A 407 1555 1555 2.87 LINK OH TYR A 64 NA NA A 407 1555 1555 2.52 LINK O PHE A 102 NA NA A 407 1555 1555 2.43 LINK OD2 ASP A 164 NA NA A 411 1555 1555 3.11 LINK OD1 ASP A 181 NA NA A 409 1555 1555 2.71 LINK O ILE A 214 NA NA A 411 1555 1555 2.66 LINK O ARG A 227 NA NA A 410 1555 1555 2.77 LINK O ASP A 230 NA NA A 410 1555 1555 2.56 LINK O VAL A 327 NA NA A 408 1555 1555 2.54 LINK OD1 ASN A 350 NA NA A 408 1555 1555 2.93 CRYST1 52.724 145.391 116.382 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018967 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008592 0.00000