HEADER DNA BINDING PROTEIN 18-JUL-23 8PVZ TITLE MANGANESE-DEPENDENT TRANSCRIPTIONAL REPRESSOR DR2539 COMPLEXED WITH TITLE 2 CADMIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON DEPENDENT REPRESSOR, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: DR_2539; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTIONAL REGULATOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.MOTA,D.DE SANCTIS REVDAT 1 08-MAY-24 8PVZ 0 JRNL AUTH C.MOTA,M.WEBSTER,M.SAIDI,U.KAPP,C.ZUBIETA,G.GIACHIN, JRNL AUTH 2 J.A.MANSO,D.DE SANCTIS JRNL TITL METAL ION ACTIVATION AND DNA RECOGNITION BY THE DEINOCOCCUS JRNL TITL 2 RADIODURANS MANGANESE SENSOR DR2539. JRNL REF FEBS J. 2024 JRNL REFN ISSN 1742-464X JRNL PMID 38652591 JRNL DOI 10.1111/FEBS.17140 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6000 - 4.1600 0.98 2805 140 0.1844 0.2137 REMARK 3 2 4.1600 - 3.3000 0.99 2628 135 0.1718 0.1851 REMARK 3 3 3.3000 - 2.8800 1.00 2613 132 0.1852 0.2397 REMARK 3 4 2.8800 - 2.6200 1.00 2586 150 0.1772 0.2205 REMARK 3 5 2.6200 - 2.4300 1.00 2562 132 0.1852 0.2349 REMARK 3 6 2.4300 - 2.2900 1.00 2585 132 0.1852 0.2455 REMARK 3 7 2.2900 - 2.1700 1.00 2556 133 0.1814 0.2101 REMARK 3 8 2.1700 - 2.0800 1.00 2566 124 0.2210 0.2805 REMARK 3 9 2.0800 - 2.0000 1.00 2539 125 0.2746 0.3063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.251 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.753 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2139 REMARK 3 ANGLE : 1.185 2913 REMARK 3 CHIRALITY : 0.065 335 REMARK 3 PLANARITY : 0.010 384 REMARK 3 DIHEDRAL : 4.923 299 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 86.1324 60.4967 12.6363 REMARK 3 T TENSOR REMARK 3 T11: 0.2184 T22: 0.2632 REMARK 3 T33: 0.2778 T12: -0.0189 REMARK 3 T13: -0.0021 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.2987 L22: 0.6864 REMARK 3 L33: 2.2209 L12: -0.0010 REMARK 3 L13: -0.0311 L23: 0.7584 REMARK 3 S TENSOR REMARK 3 S11: -0.1072 S12: -0.0388 S13: -0.0540 REMARK 3 S21: 0.0554 S22: 0.0566 S23: -0.0478 REMARK 3 S31: 0.0630 S32: 0.0557 S33: 0.0448 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292131755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979330 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24727 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3% 6-AMINOHEXANOIC ACID; 0.1M HEPES PH REMARK 280 7.0; 1.2 M SODIUM ACETATE; 0.05M CADMIUM SULPHATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.84050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.39250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.39250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.76075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.39250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.39250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.92025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.39250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.39250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 140.76075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.39250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.39250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.92025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.84050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 30.39200 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 151.96200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 46.91900 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 30.39200 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 151.96200 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 46.91900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 HIS A 56 REMARK 465 ALA A 57 REMARK 465 PRO A 58 REMARK 465 TYR A 59 REMARK 465 GLN A 60 REMARK 465 GLU A 144 REMARK 465 ARG A 145 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 THR B 2 REMARK 465 ARG B 3 REMARK 465 GLU B 144 REMARK 465 ARG B 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 11 O HOH A 301 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 126 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 126 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 122 72.80 51.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD1 REMARK 620 2 GLU A 102 OE2 86.2 REMARK 620 3 GLU A 105 OE2 84.8 89.9 REMARK 620 4 HIS A 106 NE2 79.3 165.3 86.7 REMARK 620 5 HOH A 301 O 75.0 108.9 151.0 69.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 208 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 14 NZ REMARK 620 2 GLU A 102 OE1 122.3 REMARK 620 3 GLU A 102 OE2 172.4 50.1 REMARK 620 4 GLU A 105 OE2 94.2 107.4 89.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 ALA A 33 O 101.2 REMARK 620 3 HOH A 353 O 99.4 97.2 REMARK 620 4 HOH B 306 O 96.6 89.4 161.1 REMARK 620 5 HOH B 354 O 83.2 173.9 77.8 94.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 74 OE2 REMARK 620 2 HIS A 78 NE2 120.0 REMARK 620 3 GLU A 110 OE1 78.1 145.4 REMARK 620 4 GLU A 110 OE2 97.5 94.1 52.4 REMARK 620 5 GLU A 113 OE1 144.6 91.9 83.6 94.8 REMARK 620 6 HOH A 304 O 74.8 109.1 104.0 156.4 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 GLU A 83 OE2 90.9 REMARK 620 3 HIS A 98 ND1 90.1 105.1 REMARK 620 4 HOH A 351 O 177.7 88.1 88.2 REMARK 620 5 HOH A 352 O 89.8 167.9 86.9 91.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 83 OE1 REMARK 620 2 ASP A 126 OD2 79.7 REMARK 620 3 HIS A 128 ND1 94.2 126.8 REMARK 620 4 ASP A 130 OD2 171.1 97.0 94.4 REMARK 620 5 HOH A 348 O 81.5 93.9 137.8 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 206 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HOH A 347 O 78.3 REMARK 620 3 HOH A 350 O 82.9 87.2 REMARK 620 4 HOH A 357 O 95.1 81.1 168.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 207 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 125 ND1 REMARK 620 2 HOH A 349 O 103.2 REMARK 620 3 HOH A 355 O 92.0 112.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 11 OD1 REMARK 620 2 GLU B 102 O 173.4 REMARK 620 3 GLU B 102 OE2 81.2 100.4 REMARK 620 4 GLU B 105 OE2 71.3 102.2 95.4 REMARK 620 5 HIS B 106 NE2 87.7 90.3 168.5 78.0 REMARK 620 6 HOH B 303 O 97.1 89.2 91.3 165.5 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 211 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 15 NE2 REMARK 620 2 HOH B 308 O 91.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 209 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 47 NZ REMARK 620 2 GLU B 50 OE1 111.5 REMARK 620 3 GLU B 50 OE2 121.8 49.0 REMARK 620 4 HIS B 87 NE2 55.2 60.4 98.4 REMARK 620 5 HOH B 370 O 128.5 98.1 109.6 115.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 74 OE2 REMARK 620 2 HIS B 78 NE2 113.2 REMARK 620 3 GLU B 110 OE1 75.7 152.0 REMARK 620 4 GLU B 110 OE2 82.0 101.1 52.5 REMARK 620 5 GLU B 113 OE1 153.5 92.8 83.3 97.9 REMARK 620 6 HOH B 333 O 82.7 119.7 87.2 139.3 80.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 NE2 REMARK 620 2 GLU B 83 OE2 89.7 REMARK 620 3 HIS B 98 ND1 87.6 108.0 REMARK 620 4 HOH B 364 O 98.7 107.5 144.0 REMARK 620 5 HOH B 367 O 177.0 93.2 90.9 80.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 83 OE1 REMARK 620 2 ASP B 126 OD2 81.8 REMARK 620 3 HIS B 128 ND1 92.1 132.5 REMARK 620 4 ASP B 130 OD2 172.4 98.1 93.4 REMARK 620 5 HOH B 364 O 87.3 101.1 125.7 85.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 125 ND1 REMARK 620 2 HOH B 356 O 100.4 REMARK 620 3 HOH B 368 O 93.8 118.0 REMARK 620 N 1 2 DBREF 8PVZ A 2 145 UNP Q9RRF3 Q9RRF3_DEIRA 2 145 DBREF 8PVZ B 2 145 UNP Q9RRF3 Q9RRF3_DEIRA 2 145 SEQADV 8PVZ GLY A -2 UNP Q9RRF3 EXPRESSION TAG SEQADV 8PVZ ALA A -1 UNP Q9RRF3 EXPRESSION TAG SEQADV 8PVZ MET A 0 UNP Q9RRF3 EXPRESSION TAG SEQADV 8PVZ GLY A 1 UNP Q9RRF3 EXPRESSION TAG SEQADV 8PVZ GLY B -2 UNP Q9RRF3 EXPRESSION TAG SEQADV 8PVZ ALA B -1 UNP Q9RRF3 EXPRESSION TAG SEQADV 8PVZ MET B 0 UNP Q9RRF3 EXPRESSION TAG SEQADV 8PVZ GLY B 1 UNP Q9RRF3 EXPRESSION TAG SEQRES 1 A 148 GLY ALA MET GLY THR ARG THR LEU SER PRO SER ALA GLU SEQRES 2 A 148 ASP TYR LEU LYS HIS LEU TYR GLY LEU GLY GLN SER GLY SEQRES 3 A 148 LYS VAL SER THR GLN ALA LEU ALA ALA ALA LEU GLY VAL SEQRES 4 A 148 ALA PRO ALA SER VAL THR GLY MET LEU ARG LYS LEU THR SEQRES 5 A 148 GLU GLN GLY LEU VAL SER HIS ALA PRO TYR GLN GLY ALA SEQRES 6 A 148 ARG LEU THR ALA GLU GLY GLU ARG VAL ALA LEU GLU VAL SEQRES 7 A 148 LEU ARG HIS HIS ARG LEU LEU GLU LEU PHE LEU HIS ARG SEQRES 8 A 148 ALA LEU GLY VAL PRO LEU ASP GLU VAL HIS ASP GLU ALA SEQRES 9 A 148 GLU ALA LEU GLU HIS ALA LEU SER GLU ARG LEU GLU ALA SEQRES 10 A 148 ARG ILE ALA ALA TRP LEU GLY ASP PRO THR HIS ASP PRO SEQRES 11 A 148 HIS GLY ASP PRO ILE PRO THR LEU GLU GLY GLU LEU PRO SEQRES 12 A 148 ALA ARG ALA GLU ARG SEQRES 1 B 148 GLY ALA MET GLY THR ARG THR LEU SER PRO SER ALA GLU SEQRES 2 B 148 ASP TYR LEU LYS HIS LEU TYR GLY LEU GLY GLN SER GLY SEQRES 3 B 148 LYS VAL SER THR GLN ALA LEU ALA ALA ALA LEU GLY VAL SEQRES 4 B 148 ALA PRO ALA SER VAL THR GLY MET LEU ARG LYS LEU THR SEQRES 5 B 148 GLU GLN GLY LEU VAL SER HIS ALA PRO TYR GLN GLY ALA SEQRES 6 B 148 ARG LEU THR ALA GLU GLY GLU ARG VAL ALA LEU GLU VAL SEQRES 7 B 148 LEU ARG HIS HIS ARG LEU LEU GLU LEU PHE LEU HIS ARG SEQRES 8 B 148 ALA LEU GLY VAL PRO LEU ASP GLU VAL HIS ASP GLU ALA SEQRES 9 B 148 GLU ALA LEU GLU HIS ALA LEU SER GLU ARG LEU GLU ALA SEQRES 10 B 148 ARG ILE ALA ALA TRP LEU GLY ASP PRO THR HIS ASP PRO SEQRES 11 B 148 HIS GLY ASP PRO ILE PRO THR LEU GLU GLY GLU LEU PRO SEQRES 12 B 148 ALA ARG ALA GLU ARG HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET CD A 205 1 HET CD A 206 1 HET CD A 207 1 HET CD A 208 1 HET CD A 209 1 HET CD A 210 1 HET CD A 211 1 HET CD B 201 1 HET CD B 202 1 HET CD B 203 1 HET CD B 204 1 HET CD B 205 1 HET CD B 206 1 HET CD B 207 1 HET CD B 208 1 HET CD B 209 1 HET CD B 210 2 HET CD B 211 2 HETNAM CD CADMIUM ION FORMUL 3 CD 22(CD 2+) FORMUL 25 HOH *139(H2 O) HELIX 1 AA1 SER A 6 GLN A 21 1 16 HELIX 2 AA2 SER A 26 GLY A 35 1 10 HELIX 3 AA3 ALA A 37 GLN A 51 1 15 HELIX 4 AA4 THR A 65 GLY A 91 1 27 HELIX 5 AA5 GLU A 96 GLU A 105 1 10 HELIX 6 AA6 HIS A 106 LEU A 108 5 3 HELIX 7 AA7 SER A 109 LEU A 120 1 12 HELIX 8 AA8 SER B 6 SER B 22 1 17 HELIX 9 AA9 SER B 26 GLY B 35 1 10 HELIX 10 AB1 ALA B 37 GLN B 51 1 15 HELIX 11 AB2 THR B 65 GLY B 91 1 27 HELIX 12 AB3 GLU B 96 GLU B 105 1 10 HELIX 13 AB4 SER B 109 LEU B 120 1 12 SHEET 1 AA1 2 VAL A 54 SER A 55 0 SHEET 2 AA1 2 ARG A 63 LEU A 64 -1 O ARG A 63 N SER A 55 SHEET 1 AA2 2 VAL B 54 ALA B 57 0 SHEET 2 AA2 2 GLY B 61 LEU B 64 -1 O ARG B 63 N SER B 55 LINK OD1 ASP A 11 CD CD A 203 1555 1555 2.59 LINK NZ LYS A 14 CD CD A 208 1555 1555 2.51 LINK NE2 HIS A 15 CD CD A 204 1555 1555 2.53 LINK O ALA A 33 CD CD A 204 1555 1555 2.53 LINK OE2 GLU A 74 CD CD A 205 1555 1555 2.55 LINK NE2 HIS A 78 CD CD A 205 1555 1555 2.31 LINK NE2 HIS A 79 CD CD A 201 1555 1555 2.49 LINK OE2 GLU A 83 CD CD A 201 1555 1555 2.48 LINK OE1 GLU A 83 CD CD A 202 1555 1555 2.49 LINK NE2 HIS A 87 CD CD A 206 1555 1555 2.59 LINK OD2 ASP A 95 CD CD A 210 1555 1555 2.70 LINK ND1 HIS A 98 CD CD A 201 1555 1555 2.47 LINK OE2 GLU A 102 CD CD A 203 1555 1555 2.69 LINK OE1 GLU A 102 CD CD A 208 1555 1555 2.64 LINK OE2 GLU A 102 CD CD A 208 1555 1555 2.65 LINK OE2 GLU A 105 CD CD A 203 1555 1555 2.45 LINK OE2 GLU A 105 CD CD A 208 1555 1555 2.52 LINK NE2 HIS A 106 CD CD A 203 1555 1555 2.52 LINK OE1 GLU A 110 CD CD A 205 1555 1555 2.47 LINK OE2 GLU A 110 CD CD A 205 1555 1555 2.57 LINK OE1 GLU A 113 CD CD A 205 1555 1555 2.53 LINK ND1 HIS A 125 CD CD A 207 1555 1555 2.54 LINK OD2 ASP A 126 CD CD A 202 1555 1555 2.36 LINK ND1 HIS A 128 CD CD A 202 1555 1555 2.45 LINK OD2 ASP A 130 CD CD A 202 1555 1555 2.46 LINK CD CD A 201 O HOH A 351 1555 1555 2.57 LINK CD CD A 201 O HOH A 352 1555 1555 2.64 LINK CD CD A 202 O HOH A 348 1555 1555 2.64 LINK CD CD A 203 O HOH A 301 1555 1555 2.23 LINK CD CD A 204 O HOH A 353 1555 1555 2.56 LINK CD CD A 204 O HOH B 306 1555 1555 2.60 LINK CD CD A 204 O HOH B 354 1555 1555 2.50 LINK CD CD A 205 O HOH A 304 1555 1555 2.50 LINK CD CD A 206 O HOH A 347 1555 1555 2.46 LINK CD CD A 206 O HOH A 350 1555 1555 2.67 LINK CD CD A 206 O HOH A 357 1555 1555 2.67 LINK CD CD A 207 O HOH A 349 1555 1555 2.70 LINK CD CD A 207 O HOH A 355 1555 1555 2.59 LINK CD CD A 211 NZ LYS B 24 1555 1555 2.59 LINK OD1 ASP B 11 CD CD B 203 1555 1555 2.49 LINK NE2AHIS B 15 CD A CD B 211 1555 1555 2.62 LINK NE2BHIS B 15 CD B CD B 211 1555 1555 2.63 LINK NZ LYS B 47 CD CD B 209 1555 1555 2.66 LINK OE1 GLU B 50 CD CD B 209 1555 1555 2.63 LINK OE2 GLU B 50 CD CD B 209 1555 1555 2.68 LINK OE2 GLU B 74 CD CD B 204 1555 1555 2.55 LINK NE2 HIS B 78 CD CD B 204 1555 1555 2.45 LINK NE2 HIS B 79 CD CD B 201 1555 1555 2.44 LINK OE2 GLU B 83 CD CD B 201 1555 1555 2.43 LINK OE1 GLU B 83 CD CD B 202 1555 1555 2.49 LINK NE2 HIS B 87 CD CD B 209 1555 7545 2.41 LINK OD2 ASP B 95 CD CD B 208 1555 1555 2.65 LINK ND1 HIS B 98 CD CD B 201 1555 1555 2.40 LINK OD1 ASP B 99 CD CD B 206 1555 1555 2.61 LINK O GLU B 102 CD CD B 203 1555 1555 2.57 LINK OE2 GLU B 102 CD CD B 203 1555 1555 2.55 LINK OE2 GLU B 105 CD CD B 203 1555 1555 2.39 LINK NE2 HIS B 106 CD CD B 203 1555 1555 2.42 LINK OE1 GLU B 110 CD CD B 204 1555 1555 2.53 LINK OE2 GLU B 110 CD CD B 204 1555 1555 2.56 LINK OE1 GLU B 113 CD CD B 204 1555 1555 2.49 LINK ND1 HIS B 125 CD CD B 205 1555 1555 2.54 LINK OD2 ASP B 126 CD CD B 202 1555 1555 2.43 LINK ND1 HIS B 128 CD CD B 202 1555 1555 2.48 LINK OD2 ASP B 130 CD CD B 202 1555 1555 2.51 LINK OE1 GLU B 136 CD CD B 207 1555 1555 2.67 LINK CD CD B 201 O HOH B 364 1555 1555 2.64 LINK CD CD B 201 O HOH B 367 1555 1555 2.64 LINK CD CD B 202 O HOH B 364 1555 1555 2.68 LINK CD CD B 203 O HOH B 303 1555 1555 2.41 LINK CD CD B 204 O HOH B 333 1555 1555 2.48 LINK CD CD B 205 O HOH B 356 1555 1555 2.65 LINK CD CD B 205 O HOH B 368 1555 1555 2.52 LINK CD CD B 209 O HOH B 370 1555 1555 2.51 LINK CD A CD B 210 O HOH B 359 1555 1555 2.66 LINK CD B CD B 211 O HOH B 308 1555 1555 2.65 CRYST1 60.785 60.785 187.681 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005328 0.00000