HEADER DNA BINDING PROTEIN 19-JUL-23 8PW4 TITLE PROTEIN P6 FROM BACTERIOPHAGE PHI29, C-TERMINAL DELTA20 TRUNCATED TITLE 2 VERSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LIKE PROTEIN P6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DOUBLE-STRANDED DNA-BINDING PROTEIN P6,GENE PRODUCT 6,GP6, COMPND 5 NUCLEOID-ASSOCIATED PROTEIN P6,PROTEIN P6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALASVIRUS PHI29; SOURCE 3 ORGANISM_TAXID: 10756; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE-LIKE, BACILLUS SUBTILLIS PHAGE, PHI29, NUCLEOCOMPLEX, P6, DNA KEYWDS 2 SUPERHELIX, PROTEIN OLIGOMER, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ALCORLO PAGES,J.HERMOSO DOMINGUEZ REVDAT 3 06-MAR-24 8PW4 1 JRNL REVDAT 2 07-FEB-24 8PW4 1 JRNL REVDAT 1 17-JAN-24 8PW4 0 JRNL AUTH M.ALCORLO,J.R.LUQUE-ORTEGA,F.GAGO,A.ORTEGA,M.CASTELLANOS, JRNL AUTH 2 P.CHACON,M.DE VEGA,L.BLANCO,J.M.HERMOSO,M.SERRANO,G.RIVAS, JRNL AUTH 3 J.A.HERMOSO JRNL TITL FLEXIBLE STRUCTURAL ARRANGEMENT AND DNA-BINDING PROPERTIES JRNL TITL 2 OF PROTEIN P6 FROM BACILLUS SUBTILLIS PHAGE PHI 29. JRNL REF NUCLEIC ACIDS RES. V. 52 2045 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 38281216 JRNL DOI 10.1093/NAR/GKAE041 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.390 REMARK 3 FREE R VALUE TEST SET COUNT : 599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.7000 - 3.6400 1.00 2775 147 0.1922 0.2198 REMARK 3 2 3.6400 - 2.8900 1.00 2618 157 0.2899 0.3405 REMARK 3 3 2.8900 - 2.5300 1.00 2561 159 0.3040 0.3626 REMARK 3 4 2.5300 - 2.3000 1.00 2557 136 0.3346 0.3060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1359 REMARK 3 ANGLE : 0.843 1837 REMARK 3 CHIRALITY : 0.045 215 REMARK 3 PLANARITY : 0.005 236 REMARK 3 DIHEDRAL : 10.084 180 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6432 -8.8891 13.0133 REMARK 3 T TENSOR REMARK 3 T11: 0.5516 T22: 0.6332 REMARK 3 T33: 0.3977 T12: -0.0498 REMARK 3 T13: 0.0431 T23: -0.1011 REMARK 3 L TENSOR REMARK 3 L11: 1.4528 L22: 1.9975 REMARK 3 L33: 2.6381 L12: -0.8422 REMARK 3 L13: -1.5891 L23: -0.4234 REMARK 3 S TENSOR REMARK 3 S11: 0.1281 S12: 0.6190 S13: -0.0610 REMARK 3 S21: -0.5138 S22: -0.1686 S23: -0.2318 REMARK 3 S31: 0.9396 S32: -0.4199 S33: 0.0933 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1116 5.7241 35.2663 REMARK 3 T TENSOR REMARK 3 T11: 0.3722 T22: 0.4302 REMARK 3 T33: 0.4161 T12: -0.0605 REMARK 3 T13: 0.0308 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.8215 L22: 3.0991 REMARK 3 L33: 5.4317 L12: 0.0241 REMARK 3 L13: -0.1110 L23: 0.8368 REMARK 3 S TENSOR REMARK 3 S11: -0.0810 S12: -0.1084 S13: 1.1254 REMARK 3 S21: 0.0449 S22: 0.6558 S23: -0.3075 REMARK 3 S31: -0.6425 S32: 0.2555 S33: -0.4138 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6355 -11.6411 23.4112 REMARK 3 T TENSOR REMARK 3 T11: 0.5773 T22: 0.5926 REMARK 3 T33: 0.6456 T12: -0.1317 REMARK 3 T13: 0.0619 T23: -0.0938 REMARK 3 L TENSOR REMARK 3 L11: 2.0856 L22: 3.1757 REMARK 3 L33: 2.3234 L12: -1.3329 REMARK 3 L13: 0.1018 L23: -0.6829 REMARK 3 S TENSOR REMARK 3 S11: 0.0796 S12: 0.2135 S13: -0.5901 REMARK 3 S21: 0.2430 S22: -0.2666 S23: 0.4292 REMARK 3 S31: 0.6970 S32: -0.5382 S33: 0.2707 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0992 -14.2640 3.5339 REMARK 3 T TENSOR REMARK 3 T11: 0.7808 T22: 0.7991 REMARK 3 T33: 0.6317 T12: -0.0187 REMARK 3 T13: 0.2387 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 0.2809 L22: 3.5298 REMARK 3 L33: 3.4313 L12: -1.5264 REMARK 3 L13: -1.3906 L23: 3.9052 REMARK 3 S TENSOR REMARK 3 S11: 0.4272 S12: 0.1352 S13: 0.3249 REMARK 3 S21: -0.9493 S22: 0.0279 S23: -0.5560 REMARK 3 S31: -0.6091 S32: 0.1108 S33: -0.5702 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9499 4.7543 16.9894 REMARK 3 T TENSOR REMARK 3 T11: 0.3727 T22: 0.5788 REMARK 3 T33: 0.4932 T12: -0.0484 REMARK 3 T13: 0.0200 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 1.7871 L22: 2.8139 REMARK 3 L33: 3.6542 L12: -0.8945 REMARK 3 L13: -2.4079 L23: 0.8834 REMARK 3 S TENSOR REMARK 3 S11: 0.2051 S12: 0.4388 S13: 0.0592 REMARK 3 S21: -0.2313 S22: -0.1188 S23: -0.3786 REMARK 3 S31: 0.3592 S32: -0.8919 S33: 0.0470 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1371 8.7454 29.6005 REMARK 3 T TENSOR REMARK 3 T11: 0.4291 T22: 0.4690 REMARK 3 T33: 0.4642 T12: -0.1042 REMARK 3 T13: 0.0121 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 6.7499 L22: 2.9885 REMARK 3 L33: 3.6875 L12: 0.4565 REMARK 3 L13: 0.1283 L23: 1.9617 REMARK 3 S TENSOR REMARK 3 S11: 0.2109 S12: 0.1081 S13: 0.1467 REMARK 3 S21: 0.1723 S22: 0.2859 S23: -0.5807 REMARK 3 S31: -0.2053 S32: 0.8038 S33: -0.3617 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3925 3.9229 8.9162 REMARK 3 T TENSOR REMARK 3 T11: 0.5792 T22: 0.6806 REMARK 3 T33: 0.4710 T12: -0.1774 REMARK 3 T13: 0.1256 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.8825 L22: 2.6984 REMARK 3 L33: 2.2515 L12: -0.6310 REMARK 3 L13: -0.9113 L23: 1.8941 REMARK 3 S TENSOR REMARK 3 S11: 0.2289 S12: 0.5250 S13: 0.0997 REMARK 3 S21: -0.8584 S22: 0.2540 S23: -0.3072 REMARK 3 S31: -0.6761 S32: -0.2707 S33: -0.2863 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5521 6.5674 1.4091 REMARK 3 T TENSOR REMARK 3 T11: 1.5901 T22: 1.3228 REMARK 3 T33: 1.3776 T12: -0.4587 REMARK 3 T13: 0.0727 T23: -0.6827 REMARK 3 L TENSOR REMARK 3 L11: 0.5658 L22: 2.7427 REMARK 3 L33: 7.6893 L12: 0.3456 REMARK 3 L13: -1.8797 L23: 0.7219 REMARK 3 S TENSOR REMARK 3 S11: 0.3942 S12: -0.2740 S13: -0.0443 REMARK 3 S21: 1.3097 S22: 0.6995 S23: -1.2535 REMARK 3 S31: 0.5208 S32: 1.9757 S33: -0.8973 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PW4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 41.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.03500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 8000; 20% V/V ETHYLENE REMARK 280 GLYCOL; 0.02 M 1,6-HEXANEDIOL; 0.02 M 1-BUTANOL; 0.02 M (RS)-1,2- REMARK 280 PROPANEDIOL; 0.02 M 2-PROPANOL; 0.02 M 1,4-BUTANEDIOL; 0.02 M 1, REMARK 280 3-PROPANEDIOL AND 0.1 M MES/IMIDAZOLE PH 6.5., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.91167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.82333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 137.82333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.91167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 101 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 106 O HOH A 109 6555 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 22 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 149.19 -171.47 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PW4 A 1 83 UNP P03685 NP_BPPH2 2 84 DBREF 8PW4 B 1 83 UNP P03685 NP_BPPH2 2 84 SEQRES 1 A 83 ALA LYS MET MET GLN ARG GLU ILE THR LYS THR THR VAL SEQRES 2 A 83 ASN VAL ALA LYS MET VAL MET VAL ASP GLY GLU VAL GLN SEQRES 3 A 83 VAL GLU GLN LEU PRO SER GLU THR PHE VAL GLY ASN LEU SEQRES 4 A 83 THR MET GLU GLN ALA GLN TRP ARG MET LYS ARG LYS TYR SEQRES 5 A 83 LYS GLY GLU PRO VAL GLN VAL VAL SER VAL GLU PRO ASN SEQRES 6 A 83 THR GLU VAL TYR GLU LEU PRO VAL GLU LYS PHE LEU GLU SEQRES 7 A 83 VAL ALA THR VAL ARG SEQRES 1 B 83 ALA LYS MET MET GLN ARG GLU ILE THR LYS THR THR VAL SEQRES 2 B 83 ASN VAL ALA LYS MET VAL MET VAL ASP GLY GLU VAL GLN SEQRES 3 B 83 VAL GLU GLN LEU PRO SER GLU THR PHE VAL GLY ASN LEU SEQRES 4 B 83 THR MET GLU GLN ALA GLN TRP ARG MET LYS ARG LYS TYR SEQRES 5 B 83 LYS GLY GLU PRO VAL GLN VAL VAL SER VAL GLU PRO ASN SEQRES 6 B 83 THR GLU VAL TYR GLU LEU PRO VAL GLU LYS PHE LEU GLU SEQRES 7 B 83 VAL ALA THR VAL ARG FORMUL 3 HOH *13(H2 O) HELIX 1 AA1 THR A 40 TYR A 52 1 13 HELIX 2 AA2 PRO A 72 ALA A 80 1 9 HELIX 3 AA3 THR B 40 TYR B 52 1 13 HELIX 4 AA4 VAL B 73 GLU B 78 1 6 SHEET 1 AA1 3 GLU A 24 GLN A 29 0 SHEET 2 AA1 3 GLU A 7 VAL A 21 -1 N LYS A 17 O GLU A 28 SHEET 3 AA1 3 GLU A 33 VAL A 36 -1 O GLU A 33 N VAL A 13 SHEET 1 AA2 3 GLU A 24 GLN A 29 0 SHEET 2 AA2 3 GLU A 7 VAL A 21 -1 N LYS A 17 O GLU A 28 SHEET 3 AA2 3 VAL A 57 VAL A 68 -1 O GLN A 58 N ALA A 16 SHEET 1 AA3 3 GLU B 24 GLN B 29 0 SHEET 2 AA3 3 MET B 3 VAL B 21 -1 N LYS B 17 O GLU B 28 SHEET 3 AA3 3 GLU B 33 VAL B 36 -1 O GLU B 33 N VAL B 13 SHEET 1 AA4 3 GLU B 24 GLN B 29 0 SHEET 2 AA4 3 MET B 3 VAL B 21 -1 N LYS B 17 O GLU B 28 SHEET 3 AA4 3 VAL B 57 PRO B 72 -1 O ASN B 65 N LYS B 10 CRYST1 44.185 44.185 206.735 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022632 0.013067 0.000000 0.00000 SCALE2 0.000000 0.026133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004837 0.00000