HEADER TRANSCRIPTION 20-JUL-23 8PWD TITLE CRYSTAL STRUCTURE OF VDR IN COMPLEX DES-C-RING AND AROMATIC-D-RING TITLE 2 ANALOG 3C COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D3 RECEPTOR A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDR-A,1,25-DIHYDROXYVITAMIN D3 RECEPTOR A,NUCLEAR RECEPTOR COMPND 5 SUBFAMILY 1 GROUP I MEMBER 1-A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 11 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: VDRA, NR1I1A, VDR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, VDR, AGONIST, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ROCHEL REVDAT 1 14-AUG-24 8PWD 0 JRNL AUTH N.ROCHEL JRNL TITL NOVEL DES-C-RING AND AROMATIC-D-RING ANALOGS ACTING AS JRNL TITL 2 POTENT AGONISTS OF THE VITAMIN D RECEPTOR (VDR) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.730 REMARK 3 FREE R VALUE TEST SET COUNT : 907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.1700 - 5.0800 1.00 1542 166 0.1898 0.2576 REMARK 3 2 5.0700 - 4.0300 1.00 1425 154 0.1710 0.2356 REMARK 3 3 4.0300 - 3.5300 1.00 1374 148 0.2028 0.2953 REMARK 3 4 3.5300 - 3.2000 1.00 1370 147 0.2539 0.3418 REMARK 3 5 3.2000 - 2.9800 1.00 1364 147 0.3237 0.3700 REMARK 3 6 2.9700 - 2.8000 1.00 1339 145 0.3343 0.4111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.502 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 103.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 112.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2058 REMARK 3 ANGLE : 1.103 2777 REMARK 3 CHIRALITY : 0.048 310 REMARK 3 PLANARITY : 0.009 362 REMARK 3 DIHEDRAL : 15.479 800 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.4834 39.6707 6.6094 REMARK 3 T TENSOR REMARK 3 T11: 1.0289 T22: 0.8915 REMARK 3 T33: 1.1088 T12: -0.2354 REMARK 3 T13: 0.0799 T23: -0.1869 REMARK 3 L TENSOR REMARK 3 L11: 6.1650 L22: 6.6341 REMARK 3 L33: 2.2141 L12: 0.4154 REMARK 3 L13: 1.3426 L23: -1.0673 REMARK 3 S TENSOR REMARK 3 S11: -1.2758 S12: 0.9594 S13: 3.0834 REMARK 3 S21: -0.5171 S22: 0.9170 S23: 1.4133 REMARK 3 S31: -2.3123 S32: 1.0651 S33: -0.3530 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4990 16.9689 -13.6876 REMARK 3 T TENSOR REMARK 3 T11: 0.9049 T22: 1.0988 REMARK 3 T33: 1.1236 T12: -0.1347 REMARK 3 T13: 0.0183 T23: -0.2172 REMARK 3 L TENSOR REMARK 3 L11: 7.0512 L22: 2.5615 REMARK 3 L33: 4.3541 L12: 1.8038 REMARK 3 L13: -1.0244 L23: 1.9565 REMARK 3 S TENSOR REMARK 3 S11: 0.2719 S12: -0.3872 S13: -0.6890 REMARK 3 S21: 0.0335 S22: -0.3222 S23: 1.1584 REMARK 3 S31: 0.8954 S32: -1.0027 S33: 1.0686 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4238 31.6599 -7.9755 REMARK 3 T TENSOR REMARK 3 T11: 0.7197 T22: 0.9311 REMARK 3 T33: 0.8818 T12: 0.0656 REMARK 3 T13: 0.0003 T23: -0.1338 REMARK 3 L TENSOR REMARK 3 L11: 3.8007 L22: 9.2907 REMARK 3 L33: 7.0496 L12: -1.7618 REMARK 3 L13: -2.5858 L23: 4.7928 REMARK 3 S TENSOR REMARK 3 S11: 0.3067 S12: -0.2329 S13: 0.2245 REMARK 3 S21: -1.0598 S22: -0.7654 S23: 1.0467 REMARK 3 S31: -0.9238 S32: -0.4232 S33: 0.4120 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5283 21.3361 -3.0936 REMARK 3 T TENSOR REMARK 3 T11: 0.9096 T22: 0.8992 REMARK 3 T33: 0.8511 T12: -0.0658 REMARK 3 T13: 0.1130 T23: -0.0552 REMARK 3 L TENSOR REMARK 3 L11: 2.7892 L22: 7.6334 REMARK 3 L33: 7.4105 L12: -1.5957 REMARK 3 L13: -0.7382 L23: -1.1311 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: -0.7059 S13: 0.0968 REMARK 3 S21: 0.7538 S22: -0.4329 S23: 1.0456 REMARK 3 S31: 0.7585 S32: -0.5366 S33: 0.2806 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 325 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0078 8.7508 -8.1482 REMARK 3 T TENSOR REMARK 3 T11: 2.0379 T22: 1.0019 REMARK 3 T33: 1.3031 T12: 0.0978 REMARK 3 T13: 0.2671 T23: -0.1915 REMARK 3 L TENSOR REMARK 3 L11: 6.2332 L22: 3.4588 REMARK 3 L33: 3.0907 L12: -1.2731 REMARK 3 L13: -2.9416 L23: 1.3602 REMARK 3 S TENSOR REMARK 3 S11: -0.5033 S12: -0.0566 S13: -0.5253 REMARK 3 S21: 0.6029 S22: -1.6967 S23: 2.9105 REMARK 3 S31: 3.8315 S32: -0.4493 S33: 1.3556 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7690 24.9131 5.2019 REMARK 3 T TENSOR REMARK 3 T11: 1.2471 T22: 1.0221 REMARK 3 T33: 0.7994 T12: -0.1530 REMARK 3 T13: -0.0372 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 5.7384 L22: 4.0747 REMARK 3 L33: 5.1812 L12: -1.4510 REMARK 3 L13: -0.9596 L23: 0.5882 REMARK 3 S TENSOR REMARK 3 S11: -0.4428 S12: -0.1756 S13: -0.2157 REMARK 3 S21: 0.4953 S22: 0.0256 S23: 0.4718 REMARK 3 S31: 0.4058 S32: 0.4533 S33: 0.2077 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9785 36.1824 14.1732 REMARK 3 T TENSOR REMARK 3 T11: 1.5743 T22: 1.5940 REMARK 3 T33: 1.1414 T12: -0.3568 REMARK 3 T13: 0.1979 T23: -0.2360 REMARK 3 L TENSOR REMARK 3 L11: 6.3154 L22: 2.2179 REMARK 3 L33: 2.6969 L12: 3.9633 REMARK 3 L13: -2.7856 L23: -2.7328 REMARK 3 S TENSOR REMARK 3 S11: 1.3423 S12: -0.8118 S13: 1.5265 REMARK 3 S21: 1.8960 S22: -0.5310 S23: 0.6204 REMARK 3 S31: -1.1858 S32: 0.7158 S33: -0.5201 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 405 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1662 21.8101 -5.6104 REMARK 3 T TENSOR REMARK 3 T11: 0.9757 T22: 0.8392 REMARK 3 T33: 0.9819 T12: -0.1601 REMARK 3 T13: 0.0032 T23: -0.0501 REMARK 3 L TENSOR REMARK 3 L11: 5.4123 L22: 1.6206 REMARK 3 L33: 4.3409 L12: -2.8003 REMARK 3 L13: -2.8564 L23: -0.1298 REMARK 3 S TENSOR REMARK 3 S11: 0.1086 S12: -0.4656 S13: 0.1598 REMARK 3 S21: 0.4742 S22: -0.0292 S23: -0.1036 REMARK 3 S31: 0.1506 S32: 1.0590 S33: 0.1964 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 687 THROUGH 695 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2150 38.5903 -15.4369 REMARK 3 T TENSOR REMARK 3 T11: 1.7457 T22: 0.9652 REMARK 3 T33: 1.4553 T12: -0.3264 REMARK 3 T13: 0.2448 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 9.0110 L22: 5.8960 REMARK 3 L33: 6.8527 L12: -4.2317 REMARK 3 L13: -7.2540 L23: 5.1505 REMARK 3 S TENSOR REMARK 3 S11: 3.9601 S12: 0.1221 S13: 0.3441 REMARK 3 S21: -2.1319 S22: -2.4876 S23: -0.3150 REMARK 3 S31: -4.3275 S32: 0.9111 S33: -2.0807 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9334 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 24.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NH4SO4 1.5M, BISTRIS 0.1M PH 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 177.09600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.54800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.82200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.27400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 221.37000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 177.09600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.54800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.27400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 132.82200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 221.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -33.31650 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 57.70587 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -44.27400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 HIS A 154 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 PRO A 193 REMARK 465 VAL A 194 REMARK 465 THR A 195 REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 HIS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 207 REMARK 465 SER A 208 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 PHE A 215 REMARK 465 ASN A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 THR A 224 REMARK 465 LYS A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 PHE A 228 REMARK 465 SER A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 MET A 233 REMARK 465 MET A 234 REMARK 465 TYR A 235 REMARK 465 GLN A 236 REMARK 465 ASP A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ASP A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 GLN A 248 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 VAL A 452 REMARK 465 SER A 453 REMARK 465 LYS B 686 REMARK 465 ASP B 696 REMARK 465 SER B 697 REMARK 465 SER B 698 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 451 CG CD OE1 OE2 REMARK 480 LYS B 688 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 428 O HOH A 601 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 311 -28.63 65.87 REMARK 500 CYS A 316 53.22 -102.31 REMARK 500 CYS A 324 -177.84 -57.62 REMARK 500 ASP A 370 57.15 -64.70 REMARK 500 ASP A 376 75.06 -111.44 REMARK 500 ARG A 403 -166.42 62.55 REMARK 500 LEU A 404 47.87 -99.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PWD A 156 453 UNP Q9PTN2 VDRA_DANRE 156 453 DBREF 8PWD B 686 698 UNP Q15596 NCOA2_HUMAN 686 698 SEQADV 8PWD GLY A 152 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PWD SER A 153 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PWD HIS A 154 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PWD MET A 155 UNP Q9PTN2 EXPRESSION TAG SEQRES 1 A 302 GLY SER HIS MET LEU SER ASP GLU GLN MET GLN ILE ILE SEQRES 2 A 302 ASN SER LEU VAL GLU ALA HIS HIS LYS THR TYR ASP ASP SEQRES 3 A 302 SER TYR SER ASP PHE VAL ARG PHE ARG PRO PRO VAL ARG SEQRES 4 A 302 GLU GLY PRO VAL THR ARG SER ALA SER ARG ALA ALA SER SEQRES 5 A 302 LEU HIS SER LEU SER ASP ALA SER SER ASP SER PHE ASN SEQRES 6 A 302 HIS SER PRO GLU SER VAL ASP THR LYS LEU ASN PHE SER SEQRES 7 A 302 ASN LEU LEU MET MET TYR GLN ASP SER GLY SER PRO ASP SEQRES 8 A 302 SER SER GLU GLU ASP GLN GLN SER ARG LEU SER MET LEU SEQRES 9 A 302 PRO HIS LEU ALA ASP LEU VAL SER TYR SER ILE GLN LYS SEQRES 10 A 302 VAL ILE GLY PHE ALA LYS MET ILE PRO GLY PHE ARG ASP SEQRES 11 A 302 LEU THR ALA GLU ASP GLN ILE ALA LEU LEU LYS SER SER SEQRES 12 A 302 ALA ILE GLU ILE ILE MET LEU ARG SER ASN GLN SER PHE SEQRES 13 A 302 SER LEU GLU ASP MET SER TRP SER CYS GLY GLY PRO ASP SEQRES 14 A 302 PHE LYS TYR CYS ILE ASN ASP VAL THR LYS ALA GLY HIS SEQRES 15 A 302 THR LEU GLU LEU LEU GLU PRO LEU VAL LYS PHE GLN VAL SEQRES 16 A 302 GLY LEU LYS LYS LEU LYS LEU HIS GLU GLU GLU HIS VAL SEQRES 17 A 302 LEU LEU MET ALA ILE CYS LEU LEU SER PRO ASP ARG PRO SEQRES 18 A 302 GLY VAL GLN ASP HIS VAL ARG ILE GLU ALA LEU GLN ASP SEQRES 19 A 302 ARG LEU CYS ASP VAL LEU GLN ALA TYR ILE ARG ILE GLN SEQRES 20 A 302 HIS PRO GLY GLY ARG LEU LEU TYR ALA LYS MET ILE GLN SEQRES 21 A 302 LYS LEU ALA ASP LEU ARG SER LEU ASN GLU GLU HIS SER SEQRES 22 A 302 LYS GLN TYR ARG SER LEU SER PHE GLN PRO GLU HIS SER SEQRES 23 A 302 MET GLN LEU THR PRO LEU VAL LEU GLU VAL PHE GLY SER SEQRES 24 A 302 GLU VAL SER SEQRES 1 B 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER HET FT9 A 501 35 HETNAM FT9 (1R,3S,5Z)-4-METHYLIDENE-5-[(E)-3-[3-[7,7,7- HETNAM 2 FT9 TRIS(FLUORANYL)-6-OXIDANYL-6-(TRIFLUOROMETHYL)HEPT-3- HETNAM 3 FT9 YNYL]PHENYL]PENT-2-ENYLIDENE]CYCLOHEXANE-1,3-DIOL FORMUL 3 FT9 C26 H28 F6 O3 FORMUL 4 HOH *18(H2 O) HELIX 1 AA1 SER A 157 TYR A 175 1 19 HELIX 2 AA2 TYR A 179 PHE A 185 5 7 HELIX 3 AA3 MET A 254 LYS A 274 1 21 HELIX 4 AA4 GLY A 278 LEU A 282 5 5 HELIX 5 AA5 THR A 283 SER A 303 1 21 HELIX 6 AA6 ASN A 304 PHE A 307 5 4 HELIX 7 AA7 CYS A 324 LYS A 330 1 7 HELIX 8 AA8 THR A 334 LYS A 352 1 19 HELIX 9 AA9 HIS A 354 LEU A 367 1 14 HELIX 10 AB1 ASP A 376 HIS A 399 1 24 HELIX 11 AB2 LEU A 404 PHE A 432 1 29 HELIX 12 AB3 GLN A 433 MET A 438 1 6 HELIX 13 AB4 THR A 441 PHE A 448 1 8 HELIX 14 AB5 LYS B 688 LEU B 694 1 7 SHEET 1 AA1 2 TRP A 314 SER A 315 0 SHEET 2 AA1 2 LYS A 322 TYR A 323 -1 O TYR A 323 N TRP A 314 CRYST1 66.633 66.633 265.644 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015008 0.008665 0.000000 0.00000 SCALE2 0.000000 0.017329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003764 0.00000