HEADER TRANSCRIPTION 20-JUL-23 8PWF TITLE CRYSTAL STRUCTURE OF VDR IN COMPLEX WITH DES-C-RING AND AROMATIC-D- TITLE 2 RING ANALOG 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D3 RECEPTOR A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDR-A,1,25-DIHYDROXYVITAMIN D3 RECEPTOR A,NUCLEAR RECEPTOR COMPND 5 SUBFAMILY 1 GROUP I MEMBER 1-A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 11 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: VDRA, NR1I1A, VDR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, VDR, AGONIST, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ROCHEL REVDAT 1 14-AUG-24 8PWF 0 JRNL AUTH N.ROCHEL JRNL TITL NOVEL DES-C-RING AND AROMATIC-D-RING ANALOGS ACTING AS JRNL TITL 2 POTENT AGONISTS OF THE VITAMIN D RECEPTOR (VDR) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 15810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.290 REMARK 3 FREE R VALUE TEST SET COUNT : 995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7400 - 4.4000 1.00 2334 157 0.1725 0.2178 REMARK 3 2 4.4000 - 3.4900 0.99 2166 144 0.1831 0.2401 REMARK 3 3 3.4900 - 3.0500 1.00 2101 142 0.2299 0.3371 REMARK 3 4 3.0500 - 2.7700 0.99 2079 139 0.2786 0.3868 REMARK 3 5 2.7700 - 2.5700 0.99 2060 138 0.2916 0.3433 REMARK 3 6 2.5700 - 2.4200 0.99 2024 137 0.3428 0.3966 REMARK 3 7 2.4200 - 2.3000 0.99 2051 138 0.4151 0.5020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2085 REMARK 3 ANGLE : 0.859 2817 REMARK 3 CHIRALITY : 0.047 313 REMARK 3 PLANARITY : 0.008 363 REMARK 3 DIHEDRAL : 16.782 810 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.0777 38.8956 7.8195 REMARK 3 T TENSOR REMARK 3 T11: 0.8014 T22: 1.3269 REMARK 3 T33: 0.7759 T12: -0.0844 REMARK 3 T13: 0.1352 T23: -0.2432 REMARK 3 L TENSOR REMARK 3 L11: 4.4100 L22: 6.9848 REMARK 3 L33: 6.9441 L12: -1.9118 REMARK 3 L13: -2.7563 L23: 1.5236 REMARK 3 S TENSOR REMARK 3 S11: 0.3997 S12: 0.0839 S13: 1.1638 REMARK 3 S21: 0.4296 S22: -0.4045 S23: 0.5209 REMARK 3 S31: -0.6299 S32: -1.3608 S33: 0.1403 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.1695 16.8567 -13.7253 REMARK 3 T TENSOR REMARK 3 T11: 0.7877 T22: 1.0832 REMARK 3 T33: 0.6755 T12: -0.1710 REMARK 3 T13: 0.0576 T23: -0.1590 REMARK 3 L TENSOR REMARK 3 L11: 2.5710 L22: 5.3574 REMARK 3 L33: 4.4100 L12: 2.6430 REMARK 3 L13: 1.6969 L23: 4.6573 REMARK 3 S TENSOR REMARK 3 S11: 0.0530 S12: 0.1934 S13: 0.3846 REMARK 3 S21: -0.4424 S22: -1.0050 S23: 0.9108 REMARK 3 S31: 0.1245 S32: -1.3187 S33: 1.2018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0980 30.5628 -5.6921 REMARK 3 T TENSOR REMARK 3 T11: 0.6453 T22: 0.7721 REMARK 3 T33: 0.4633 T12: -0.0016 REMARK 3 T13: 0.0044 T23: -0.0833 REMARK 3 L TENSOR REMARK 3 L11: 5.9326 L22: 5.3975 REMARK 3 L33: 8.3611 L12: 1.5681 REMARK 3 L13: -3.1748 L23: 1.0638 REMARK 3 S TENSOR REMARK 3 S11: 0.4291 S12: -0.5559 S13: 0.4643 REMARK 3 S21: 0.0668 S22: -0.4911 S23: 0.2536 REMARK 3 S31: -0.4068 S32: 0.1113 S33: 0.0427 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8682 10.6209 -5.0864 REMARK 3 T TENSOR REMARK 3 T11: 1.2658 T22: 1.0276 REMARK 3 T33: 0.7799 T12: -0.3249 REMARK 3 T13: 0.2207 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 5.6286 L22: 6.1222 REMARK 3 L33: 8.4722 L12: -0.8743 REMARK 3 L13: -2.6376 L23: 1.2234 REMARK 3 S TENSOR REMARK 3 S11: -0.7157 S12: 0.0463 S13: -1.1373 REMARK 3 S21: 0.1055 S22: -0.0780 S23: 0.6896 REMARK 3 S31: 1.7945 S32: -1.3771 S33: 0.7811 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 367 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4712 21.4400 5.9940 REMARK 3 T TENSOR REMARK 3 T11: 0.8219 T22: 0.9950 REMARK 3 T33: 0.5003 T12: -0.0821 REMARK 3 T13: 0.0056 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.4723 L22: 5.2261 REMARK 3 L33: 7.1251 L12: 0.3875 REMARK 3 L13: -2.6138 L23: 1.7868 REMARK 3 S TENSOR REMARK 3 S11: -0.4721 S12: -0.1844 S13: -0.2826 REMARK 3 S21: 0.9205 S22: 0.1598 S23: 0.1326 REMARK 3 S31: 0.7003 S32: -0.2029 S33: 0.2786 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 368 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6416 36.7610 2.5701 REMARK 3 T TENSOR REMARK 3 T11: 1.0136 T22: 1.2839 REMARK 3 T33: 0.7908 T12: -0.2429 REMARK 3 T13: -0.0515 T23: -0.1932 REMARK 3 L TENSOR REMARK 3 L11: 4.9441 L22: 4.5544 REMARK 3 L33: 8.8104 L12: -0.0143 REMARK 3 L13: -3.0570 L23: 1.3124 REMARK 3 S TENSOR REMARK 3 S11: 0.4487 S12: -0.6965 S13: 1.8502 REMARK 3 S21: 1.7406 S22: -0.1489 S23: -0.0744 REMARK 3 S31: -1.5525 S32: 1.8934 S33: -0.5432 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 379 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7061 36.0842 13.8952 REMARK 3 T TENSOR REMARK 3 T11: 1.1628 T22: 1.5818 REMARK 3 T33: 0.7063 T12: -0.2071 REMARK 3 T13: 0.1272 T23: -0.2727 REMARK 3 L TENSOR REMARK 3 L11: 6.9171 L22: 4.9927 REMARK 3 L33: 2.9484 L12: -1.6788 REMARK 3 L13: -1.9344 L23: 1.5387 REMARK 3 S TENSOR REMARK 3 S11: 0.4049 S12: -2.1088 S13: 0.5461 REMARK 3 S21: 1.4928 S22: -0.2048 S23: 0.0042 REMARK 3 S31: -0.8824 S32: 0.8782 S33: -0.4051 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 402 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8404 21.5932 4.2642 REMARK 3 T TENSOR REMARK 3 T11: 0.9885 T22: 1.1356 REMARK 3 T33: 0.5261 T12: 0.1000 REMARK 3 T13: -0.0458 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 5.6299 L22: 4.6882 REMARK 3 L33: 2.9409 L12: -2.0649 REMARK 3 L13: -2.3712 L23: 2.5030 REMARK 3 S TENSOR REMARK 3 S11: -0.5778 S12: -1.8891 S13: -0.0143 REMARK 3 S21: 1.0989 S22: 0.4005 S23: -0.0124 REMARK 3 S31: 0.9716 S32: 1.5324 S33: 0.1090 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 432 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1520 22.0739 -17.0749 REMARK 3 T TENSOR REMARK 3 T11: 0.9209 T22: 0.9049 REMARK 3 T33: 0.4642 T12: 0.0983 REMARK 3 T13: 0.0186 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 8.7382 L22: 8.2938 REMARK 3 L33: 8.4204 L12: -3.5386 REMARK 3 L13: -3.1085 L23: 5.7622 REMARK 3 S TENSOR REMARK 3 S11: -0.2938 S12: 0.2809 S13: -0.0485 REMARK 3 S21: 1.3995 S22: 0.4379 S23: -0.4690 REMARK 3 S31: 1.9104 S32: 1.4143 S33: -0.0674 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 687 THROUGH 695 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0171 38.1549 -14.9574 REMARK 3 T TENSOR REMARK 3 T11: 1.0869 T22: 0.8438 REMARK 3 T33: 0.8195 T12: -0.1252 REMARK 3 T13: 0.0452 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 3.2553 L22: 3.3126 REMARK 3 L33: 3.6341 L12: 0.5171 REMARK 3 L13: 2.5602 L23: -1.7988 REMARK 3 S TENSOR REMARK 3 S11: 0.6614 S12: 1.4647 S13: 1.4385 REMARK 3 S21: -0.0547 S22: -0.5449 S23: -0.0336 REMARK 3 S31: -1.8204 S32: 1.2603 S33: -0.1858 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15928 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LISO4 1.6M, HEPES 0.1M PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 176.08067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.04033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.06050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.02017 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 220.10083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 176.08067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.04033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.02017 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 132.06050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 220.10083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -32.79950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 56.81040 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -44.02017 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 PRO A 193 REMARK 465 VAL A 194 REMARK 465 THR A 195 REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 HIS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 207 REMARK 465 SER A 208 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 PHE A 215 REMARK 465 ASN A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 THR A 224 REMARK 465 LYS A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 PHE A 228 REMARK 465 SER A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 MET A 233 REMARK 465 MET A 234 REMARK 465 TYR A 235 REMARK 465 GLN A 236 REMARK 465 ASP A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ASP A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 GLN A 248 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 VAL A 452 REMARK 465 SER A 453 REMARK 465 LYS B 686 REMARK 465 ASP B 696 REMARK 465 SER B 697 REMARK 465 SER B 698 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 155 125.36 -172.45 REMARK 500 LEU A 252 60.42 73.22 REMARK 500 LYS A 330 4.54 -65.34 REMARK 500 SER A 450 73.97 -115.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PWF A 156 453 UNP Q9PTN2 VDRA_DANRE 156 453 DBREF 8PWF B 686 698 UNP Q15596 NCOA2_HUMAN 686 698 SEQADV 8PWF GLY A 152 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PWF SER A 153 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PWF HIS A 154 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PWF MET A 155 UNP Q9PTN2 EXPRESSION TAG SEQRES 1 A 302 GLY SER HIS MET LEU SER ASP GLU GLN MET GLN ILE ILE SEQRES 2 A 302 ASN SER LEU VAL GLU ALA HIS HIS LYS THR TYR ASP ASP SEQRES 3 A 302 SER TYR SER ASP PHE VAL ARG PHE ARG PRO PRO VAL ARG SEQRES 4 A 302 GLU GLY PRO VAL THR ARG SER ALA SER ARG ALA ALA SER SEQRES 5 A 302 LEU HIS SER LEU SER ASP ALA SER SER ASP SER PHE ASN SEQRES 6 A 302 HIS SER PRO GLU SER VAL ASP THR LYS LEU ASN PHE SER SEQRES 7 A 302 ASN LEU LEU MET MET TYR GLN ASP SER GLY SER PRO ASP SEQRES 8 A 302 SER SER GLU GLU ASP GLN GLN SER ARG LEU SER MET LEU SEQRES 9 A 302 PRO HIS LEU ALA ASP LEU VAL SER TYR SER ILE GLN LYS SEQRES 10 A 302 VAL ILE GLY PHE ALA LYS MET ILE PRO GLY PHE ARG ASP SEQRES 11 A 302 LEU THR ALA GLU ASP GLN ILE ALA LEU LEU LYS SER SER SEQRES 12 A 302 ALA ILE GLU ILE ILE MET LEU ARG SER ASN GLN SER PHE SEQRES 13 A 302 SER LEU GLU ASP MET SER TRP SER CYS GLY GLY PRO ASP SEQRES 14 A 302 PHE LYS TYR CYS ILE ASN ASP VAL THR LYS ALA GLY HIS SEQRES 15 A 302 THR LEU GLU LEU LEU GLU PRO LEU VAL LYS PHE GLN VAL SEQRES 16 A 302 GLY LEU LYS LYS LEU LYS LEU HIS GLU GLU GLU HIS VAL SEQRES 17 A 302 LEU LEU MET ALA ILE CYS LEU LEU SER PRO ASP ARG PRO SEQRES 18 A 302 GLY VAL GLN ASP HIS VAL ARG ILE GLU ALA LEU GLN ASP SEQRES 19 A 302 ARG LEU CYS ASP VAL LEU GLN ALA TYR ILE ARG ILE GLN SEQRES 20 A 302 HIS PRO GLY GLY ARG LEU LEU TYR ALA LYS MET ILE GLN SEQRES 21 A 302 LYS LEU ALA ASP LEU ARG SER LEU ASN GLU GLU HIS SER SEQRES 22 A 302 LYS GLN TYR ARG SER LEU SER PHE GLN PRO GLU HIS SER SEQRES 23 A 302 MET GLN LEU THR PRO LEU VAL LEU GLU VAL PHE GLY SER SEQRES 24 A 302 GLU VAL SER SEQRES 1 B 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER HET FVB A 501 35 HETNAM FVB (1R,3S,5Z)-4-METHYLIDENE-5-[(E)-3-[3-[7,7,7- HETNAM 2 FVB TRIS(FLUORANYL)-6-OXIDANYL-6-(TRIFLUOROMETHYL) HETNAM 3 FVB HEPTYL]PHENYL]PENT-2-ENYLIDENE]CYCLOHEXANE-1,3-DIOL FORMUL 3 FVB C26 H32 F6 O3 FORMUL 4 HOH *41(H2 O) HELIX 1 AA1 SER A 157 TYR A 175 1 19 HELIX 2 AA2 TYR A 179 PHE A 185 5 7 HELIX 3 AA3 MET A 254 LYS A 274 1 21 HELIX 4 AA4 THR A 283 SER A 303 1 21 HELIX 5 AA5 CYS A 324 LYS A 330 1 7 HELIX 6 AA6 THR A 334 LEU A 351 1 18 HELIX 7 AA7 HIS A 354 LEU A 367 1 14 HELIX 8 AA8 VAL A 378 HIS A 399 1 22 HELIX 9 AA9 GLY A 401 ARG A 403 5 3 HELIX 10 AB1 LEU A 404 PHE A 432 1 29 HELIX 11 AB2 GLN A 433 MET A 438 1 6 HELIX 12 AB3 THR A 441 GLY A 449 1 9 HELIX 13 AB4 LYS B 688 LEU B 694 1 7 SHEET 1 AA1 3 PHE A 307 SER A 308 0 SHEET 2 AA1 3 SER A 313 SER A 315 -1 O SER A 313 N SER A 308 SHEET 3 AA1 3 LYS A 322 TYR A 323 -1 O TYR A 323 N TRP A 314 CRYST1 65.599 65.599 264.121 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015244 0.008801 0.000000 0.00000 SCALE2 0.000000 0.017602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003786 0.00000