HEADER VIRUS LIKE PARTICLE 21-JUL-23 8PWO TITLE HEPATITIS B CORE PROTEIN WITH BOUND GERANIOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: B, A, C, D; COMPND 4 SYNONYM: CORE ANTIGEN,CORE PROTEIN,HBCAG,P21.5; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CAPSID HAS BOUND GERANIOL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS B VIRUS AYW/FRANCE/TIOLLAIS/1979; SOURCE 3 ORGANISM_TAXID: 490133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GERANIOL HEPATITIS B CORE PROTEIN HYFROPHOBIC POCKET POCKET FACTOR KEYWDS 2 HEPATITIS B VIRUS, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR C.MAKBUL,V.KHAYENKO,M.H.MARIC,B.BOTTCHER REVDAT 1 31-JUL-24 8PWO 0 JRNL AUTH V.KHAYENKO,C.MAKBUL,C.SCHULTE,N.HEMMELMANN,B.BOTTCHER, JRNL AUTH 2 H.M.MARIC JRNL TITL PEPTIDE DIMERS AGGREGATE HEPATITIS B CORE PROTEINS IN LIVE JRNL TITL 2 CELLS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, UCSF CHIMERA, REMARK 3 RELION, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.800 REMARK 3 NUMBER OF PARTICLES : 229646 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8PWO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132094. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HEPATITIS B VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 4.00 REMARK 245 SAMPLE SUPPORT DETAILS : PLASMA CLEANER (MODEL PDC-002. REMARK 245 HARRICK PLASMA, ITHACA, NY, USA) REMARK 245 ; AT MEDIUM POWER OF THE REMARK 245 INSTRUMENT REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4875 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 360-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 0.309017 -0.500000 89.57103 REMARK 350 BIOMT2 2 0.309017 0.500000 0.809017 -144.92897 REMARK 350 BIOMT3 2 0.500000 -0.809017 0.309017 234.50000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.809017 -0.309017 -0.500000 234.50000 REMARK 350 BIOMT2 4 0.309017 -0.500000 0.809017 89.57103 REMARK 350 BIOMT3 4 -0.500000 -0.809017 -0.309017 613.92897 REMARK 350 BIOMT1 5 -0.809017 -0.309017 -0.500000 613.92897 REMARK 350 BIOMT2 5 -0.309017 -0.500000 0.809017 234.50000 REMARK 350 BIOMT3 5 -0.500000 0.809017 0.309017 89.57103 REMARK 350 BIOMT1 6 -0.500000 -0.809017 0.309017 469.00000 REMARK 350 BIOMT2 6 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 6 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 7 -0.500000 -0.809017 0.309017 469.00000 REMARK 350 BIOMT3 7 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 8 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 8 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 8 -0.500000 -0.809017 0.309017 469.00000 REMARK 350 BIOMT1 9 0.809017 0.309017 0.500000 -144.92897 REMARK 350 BIOMT2 9 -0.309017 -0.500000 0.809017 234.50000 REMARK 350 BIOMT3 9 0.500000 -0.809017 -0.309017 379.42897 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 469.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 469.00000 REMARK 350 BIOMT1 11 -0.809017 0.309017 0.500000 234.50000 REMARK 350 BIOMT2 11 0.309017 -0.500000 0.809017 89.57103 REMARK 350 BIOMT3 11 0.500000 0.809017 0.309017 -144.92897 REMARK 350 BIOMT1 12 0.309017 0.500000 -0.809017 234.50000 REMARK 350 BIOMT2 12 0.500000 -0.809017 -0.309017 379.42897 REMARK 350 BIOMT3 12 -0.809017 -0.309017 -0.500000 613.92897 REMARK 350 BIOMT1 13 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 13 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 14 0.309017 -0.500000 0.809017 89.57103 REMARK 350 BIOMT2 14 -0.500000 -0.809017 -0.309017 613.92897 REMARK 350 BIOMT3 14 0.809017 -0.309017 -0.500000 234.50000 REMARK 350 BIOMT1 15 -0.309017 -0.500000 0.809017 234.50000 REMARK 350 BIOMT2 15 -0.500000 0.809017 0.309017 89.57103 REMARK 350 BIOMT3 15 -0.809017 -0.309017 -0.500000 613.92897 REMARK 350 BIOMT1 16 0.500000 -0.809017 0.309017 234.50000 REMARK 350 BIOMT2 16 -0.809017 -0.309017 0.500000 379.42897 REMARK 350 BIOMT3 16 -0.309017 -0.500000 -0.809017 613.92897 REMARK 350 BIOMT1 17 -0.809017 -0.309017 0.500000 379.42897 REMARK 350 BIOMT2 17 0.309017 0.500000 0.809017 -144.92897 REMARK 350 BIOMT3 17 -0.500000 0.809017 -0.309017 234.50000 REMARK 350 BIOMT1 18 0.309017 0.500000 0.809017 -144.92897 REMARK 350 BIOMT2 18 0.500000 -0.809017 0.309017 234.50000 REMARK 350 BIOMT3 18 0.809017 0.309017 -0.500000 89.57103 REMARK 350 BIOMT1 19 0.500000 0.809017 0.309017 -144.92897 REMARK 350 BIOMT2 19 0.809017 -0.309017 -0.500000 234.50000 REMARK 350 BIOMT3 19 -0.309017 0.500000 -0.809017 379.42897 REMARK 350 BIOMT1 20 0.500000 -0.809017 -0.309017 379.42897 REMARK 350 BIOMT2 20 -0.809017 -0.309017 -0.500000 613.92897 REMARK 350 BIOMT3 20 0.309017 0.500000 -0.809017 234.50000 REMARK 350 BIOMT1 21 -1.000000 0.000000 0.000000 469.00000 REMARK 350 BIOMT2 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 0.000000 -1.000000 469.00000 REMARK 350 BIOMT1 22 -0.500000 -0.809017 -0.309017 613.92897 REMARK 350 BIOMT2 22 -0.809017 0.309017 0.500000 234.50000 REMARK 350 BIOMT3 22 -0.309017 0.500000 -0.809017 379.42897 REMARK 350 BIOMT1 23 0.000000 0.000000 -1.000000 469.00000 REMARK 350 BIOMT2 23 -1.000000 0.000000 0.000000 469.00000 REMARK 350 BIOMT3 23 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 -0.500000 0.809017 0.309017 89.57103 REMARK 350 BIOMT2 24 0.809017 0.309017 0.500000 -144.92897 REMARK 350 BIOMT3 24 0.309017 0.500000 -0.809017 234.50000 REMARK 350 BIOMT1 25 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 25 0.000000 -1.000000 0.000000 469.00000 REMARK 350 BIOMT3 25 0.000000 0.000000 -1.000000 469.00000 REMARK 350 BIOMT1 26 0.309017 0.500000 -0.809017 234.50000 REMARK 350 BIOMT2 26 -0.500000 0.809017 0.309017 89.57103 REMARK 350 BIOMT3 26 0.809017 0.309017 0.500000 -144.92897 REMARK 350 BIOMT1 27 0.000000 0.000000 -1.000000 469.00000 REMARK 350 BIOMT2 27 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 27 0.000000 -1.000000 0.000000 469.00000 REMARK 350 BIOMT1 28 -0.309017 0.500000 -0.809017 379.42897 REMARK 350 BIOMT2 28 -0.500000 -0.809017 -0.309017 613.92897 REMARK 350 BIOMT3 28 -0.809017 0.309017 0.500000 234.50000 REMARK 350 BIOMT1 29 -0.809017 0.309017 -0.500000 469.00000 REMARK 350 BIOMT2 29 0.309017 -0.500000 -0.809017 469.00000 REMARK 350 BIOMT3 29 -0.500000 -0.809017 0.309017 469.00000 REMARK 350 BIOMT1 30 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 30 -0.809017 0.309017 -0.500000 469.00000 REMARK 350 BIOMT3 30 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 31 0.309017 -0.500000 -0.809017 469.00000 REMARK 350 BIOMT2 31 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 31 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 32 -0.309017 -0.500000 -0.809017 613.92897 REMARK 350 BIOMT2 32 -0.500000 0.809017 -0.309017 234.50000 REMARK 350 BIOMT3 32 0.809017 0.309017 -0.500000 89.57103 REMARK 350 BIOMT1 33 -0.500000 0.809017 -0.309017 234.50000 REMARK 350 BIOMT2 33 0.809017 0.309017 -0.500000 89.57103 REMARK 350 BIOMT3 33 -0.309017 -0.500000 -0.809017 613.92897 REMARK 350 BIOMT1 34 -0.309017 0.500000 -0.809017 379.42897 REMARK 350 BIOMT2 34 0.500000 0.809017 0.309017 -144.92897 REMARK 350 BIOMT3 34 0.809017 -0.309017 -0.500000 234.50000 REMARK 350 BIOMT1 35 0.809017 0.309017 -0.500000 89.57103 REMARK 350 BIOMT2 35 -0.309017 -0.500000 -0.809017 613.92897 REMARK 350 BIOMT3 35 -0.500000 0.809017 -0.309017 234.50000 REMARK 350 BIOMT1 36 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 -1.000000 469.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 469.00000 REMARK 350 BIOMT1 37 0.809017 -0.309017 -0.500000 234.50000 REMARK 350 BIOMT2 37 -0.309017 0.500000 -0.809017 379.42897 REMARK 350 BIOMT3 37 0.500000 0.809017 0.309017 -144.92897 REMARK 350 BIOMT1 38 -0.809017 -0.309017 -0.500000 613.92897 REMARK 350 BIOMT2 38 0.309017 0.500000 -0.809017 234.50000 REMARK 350 BIOMT3 38 0.500000 -0.809017 -0.309017 379.42897 REMARK 350 BIOMT1 39 -0.500000 -0.809017 0.309017 469.00000 REMARK 350 BIOMT2 39 -0.809017 0.309017 -0.500000 469.00000 REMARK 350 BIOMT3 39 0.309017 -0.500000 -0.809017 469.00000 REMARK 350 BIOMT1 40 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 40 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 40 -0.809017 0.309017 -0.500000 469.00000 REMARK 350 BIOMT1 41 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 41 0.309017 -0.500000 -0.809017 469.00000 REMARK 350 BIOMT3 41 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 42 0.809017 0.309017 0.500000 -144.92897 REMARK 350 BIOMT2 42 0.309017 0.500000 -0.809017 234.50000 REMARK 350 BIOMT3 42 -0.500000 0.809017 0.309017 89.57103 REMARK 350 BIOMT1 43 0.000000 -1.000000 0.000000 469.00000 REMARK 350 BIOMT2 43 0.000000 0.000000 -1.000000 469.00000 REMARK 350 BIOMT3 43 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 44 -0.809017 0.309017 0.500000 234.50000 REMARK 350 BIOMT2 44 -0.309017 0.500000 -0.809017 379.42897 REMARK 350 BIOMT3 44 -0.500000 -0.809017 -0.309017 613.92897 REMARK 350 BIOMT1 45 -0.809017 0.309017 -0.500000 469.00000 REMARK 350 BIOMT2 45 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 45 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 46 -1.000000 0.000000 0.000000 469.00000 REMARK 350 BIOMT3 46 0.000000 -1.000000 0.000000 469.00000 REMARK 350 BIOMT1 47 0.309017 -0.500000 0.809017 89.57103 REMARK 350 BIOMT2 47 0.500000 0.809017 0.309017 -144.92897 REMARK 350 BIOMT3 47 -0.809017 0.309017 0.500000 234.50000 REMARK 350 BIOMT1 48 -0.309017 -0.500000 0.809017 234.50000 REMARK 350 BIOMT2 48 0.500000 -0.809017 -0.309017 379.42897 REMARK 350 BIOMT3 48 0.809017 0.309017 0.500000 -144.92897 REMARK 350 BIOMT1 49 0.500000 -0.809017 0.309017 234.50000 REMARK 350 BIOMT2 49 0.809017 0.309017 -0.500000 89.57103 REMARK 350 BIOMT3 49 0.309017 0.500000 0.809017 -144.92897 REMARK 350 BIOMT1 50 -0.809017 -0.309017 0.500000 379.42897 REMARK 350 BIOMT2 50 -0.309017 -0.500000 -0.809017 613.92897 REMARK 350 BIOMT3 50 0.500000 -0.809017 0.309017 234.50000 REMARK 350 BIOMT1 51 0.309017 0.500000 0.809017 -144.92897 REMARK 350 BIOMT2 51 -0.500000 0.809017 -0.309017 234.50000 REMARK 350 BIOMT3 51 -0.809017 -0.309017 0.500000 379.42897 REMARK 350 BIOMT1 52 0.500000 0.809017 0.309017 -144.92897 REMARK 350 BIOMT2 52 -0.809017 0.309017 0.500000 234.50000 REMARK 350 BIOMT3 52 0.309017 -0.500000 0.809017 89.57103 REMARK 350 BIOMT1 53 0.500000 -0.809017 -0.309017 379.42897 REMARK 350 BIOMT2 53 0.809017 0.309017 0.500000 -144.92897 REMARK 350 BIOMT3 53 -0.309017 -0.500000 0.809017 234.50000 REMARK 350 BIOMT1 54 -1.000000 0.000000 0.000000 469.00000 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 469.00000 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 55 -0.500000 -0.809017 -0.309017 613.92897 REMARK 350 BIOMT2 55 0.809017 -0.309017 -0.500000 234.50000 REMARK 350 BIOMT3 55 0.309017 -0.500000 0.809017 89.57103 REMARK 350 BIOMT1 56 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 56 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 56 0.309017 -0.500000 -0.809017 469.00000 REMARK 350 BIOMT1 57 -0.500000 0.809017 0.309017 89.57103 REMARK 350 BIOMT2 57 -0.809017 -0.309017 -0.500000 613.92897 REMARK 350 BIOMT3 57 -0.309017 -0.500000 0.809017 234.50000 REMARK 350 BIOMT1 58 0.309017 -0.500000 -0.809017 469.00000 REMARK 350 BIOMT2 58 -0.500000 -0.809017 0.309017 469.00000 REMARK 350 BIOMT3 58 -0.809017 0.309017 -0.500000 469.00000 REMARK 350 BIOMT1 59 -0.309017 -0.500000 -0.809017 613.92897 REMARK 350 BIOMT2 59 0.500000 -0.809017 0.309017 234.50000 REMARK 350 BIOMT3 59 -0.809017 -0.309017 0.500000 379.42897 REMARK 350 BIOMT1 60 -0.500000 0.809017 -0.309017 234.50000 REMARK 350 BIOMT2 60 -0.809017 -0.309017 0.500000 379.42897 REMARK 350 BIOMT3 60 0.309017 0.500000 0.809017 -144.92897 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 144 REMARK 465 GLU B 145 REMARK 465 THR B 146 REMARK 465 THR B 147 REMARK 465 VAL B 148 REMARK 465 VAL B 149 REMARK 465 ARG B 150 REMARK 465 ARG B 151 REMARK 465 ARG B 152 REMARK 465 GLY B 153 REMARK 465 ARG B 154 REMARK 465 SER B 155 REMARK 465 PRO B 156 REMARK 465 ARG B 157 REMARK 465 ARG B 158 REMARK 465 ARG B 159 REMARK 465 THR B 160 REMARK 465 PRO B 161 REMARK 465 SER B 162 REMARK 465 PRO B 163 REMARK 465 ARG B 164 REMARK 465 ARG B 165 REMARK 465 ARG B 166 REMARK 465 ARG B 167 REMARK 465 SER B 168 REMARK 465 GLN B 169 REMARK 465 SER B 170 REMARK 465 PRO B 171 REMARK 465 ARG B 172 REMARK 465 ARG B 173 REMARK 465 ARG B 174 REMARK 465 ARG B 175 REMARK 465 SER B 176 REMARK 465 GLN B 177 REMARK 465 SER B 178 REMARK 465 ARG B 179 REMARK 465 GLU B 180 REMARK 465 SER B 181 REMARK 465 GLN B 182 REMARK 465 CYS B 183 REMARK 465 PRO A 144 REMARK 465 GLU A 145 REMARK 465 THR A 146 REMARK 465 THR A 147 REMARK 465 VAL A 148 REMARK 465 VAL A 149 REMARK 465 ARG A 150 REMARK 465 ARG A 151 REMARK 465 ARG A 152 REMARK 465 GLY A 153 REMARK 465 ARG A 154 REMARK 465 SER A 155 REMARK 465 PRO A 156 REMARK 465 ARG A 157 REMARK 465 ARG A 158 REMARK 465 ARG A 159 REMARK 465 THR A 160 REMARK 465 PRO A 161 REMARK 465 SER A 162 REMARK 465 PRO A 163 REMARK 465 ARG A 164 REMARK 465 ARG A 165 REMARK 465 ARG A 166 REMARK 465 ARG A 167 REMARK 465 SER A 168 REMARK 465 GLN A 169 REMARK 465 SER A 170 REMARK 465 PRO A 171 REMARK 465 ARG A 172 REMARK 465 ARG A 173 REMARK 465 ARG A 174 REMARK 465 ARG A 175 REMARK 465 SER A 176 REMARK 465 GLN A 177 REMARK 465 SER A 178 REMARK 465 ARG A 179 REMARK 465 GLU A 180 REMARK 465 SER A 181 REMARK 465 GLN A 182 REMARK 465 CYS A 183 REMARK 465 PRO C 144 REMARK 465 GLU C 145 REMARK 465 THR C 146 REMARK 465 THR C 147 REMARK 465 VAL C 148 REMARK 465 VAL C 149 REMARK 465 ARG C 150 REMARK 465 ARG C 151 REMARK 465 ARG C 152 REMARK 465 GLY C 153 REMARK 465 ARG C 154 REMARK 465 SER C 155 REMARK 465 PRO C 156 REMARK 465 ARG C 157 REMARK 465 ARG C 158 REMARK 465 ARG C 159 REMARK 465 THR C 160 REMARK 465 PRO C 161 REMARK 465 SER C 162 REMARK 465 PRO C 163 REMARK 465 ARG C 164 REMARK 465 ARG C 165 REMARK 465 ARG C 166 REMARK 465 ARG C 167 REMARK 465 SER C 168 REMARK 465 GLN C 169 REMARK 465 SER C 170 REMARK 465 PRO C 171 REMARK 465 ARG C 172 REMARK 465 ARG C 173 REMARK 465 ARG C 174 REMARK 465 ARG C 175 REMARK 465 SER C 176 REMARK 465 GLN C 177 REMARK 465 SER C 178 REMARK 465 ARG C 179 REMARK 465 GLU C 180 REMARK 465 SER C 181 REMARK 465 GLN C 182 REMARK 465 CYS C 183 REMARK 465 PRO D 144 REMARK 465 GLU D 145 REMARK 465 THR D 146 REMARK 465 THR D 147 REMARK 465 VAL D 148 REMARK 465 VAL D 149 REMARK 465 ARG D 150 REMARK 465 ARG D 151 REMARK 465 ARG D 152 REMARK 465 GLY D 153 REMARK 465 ARG D 154 REMARK 465 SER D 155 REMARK 465 PRO D 156 REMARK 465 ARG D 157 REMARK 465 ARG D 158 REMARK 465 ARG D 159 REMARK 465 THR D 160 REMARK 465 PRO D 161 REMARK 465 SER D 162 REMARK 465 PRO D 163 REMARK 465 ARG D 164 REMARK 465 ARG D 165 REMARK 465 ARG D 166 REMARK 465 ARG D 167 REMARK 465 SER D 168 REMARK 465 GLN D 169 REMARK 465 SER D 170 REMARK 465 PRO D 171 REMARK 465 ARG D 172 REMARK 465 ARG D 173 REMARK 465 ARG D 174 REMARK 465 ARG D 175 REMARK 465 SER D 176 REMARK 465 GLN D 177 REMARK 465 SER D 178 REMARK 465 ARG D 179 REMARK 465 GLU D 180 REMARK 465 SER D 181 REMARK 465 GLN D 182 REMARK 465 CYS D 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS B 61 SG REMARK 470 CYS A 61 SG REMARK 470 PHE C 18 CG CD1 CD2 CE1 CE2 CZ REMARK 470 CYS C 61 SG REMARK 470 CYS D 61 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 91 -63.32 -93.03 REMARK 500 TYR A 38 20.48 -141.33 REMARK 500 TYR C 38 29.75 -141.78 REMARK 500 PRO C 45 48.92 -87.72 REMARK 500 PRO D 20 -177.10 -69.25 REMARK 500 TYR D 38 25.16 -141.91 REMARK 500 ASP D 78 108.95 -57.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-17996 RELATED DB: EMDB REMARK 900 HEPATITIS B CORE PROTEIN WITH BOUND GERANIOL DBREF 8PWO B 1 183 UNP P03146 CAPSD_HBVD3 1 183 DBREF 8PWO A 1 183 UNP P03146 CAPSD_HBVD3 1 183 DBREF 8PWO C 1 183 UNP P03146 CAPSD_HBVD3 1 183 DBREF 8PWO D 1 183 UNP P03146 CAPSD_HBVD3 1 183 SEQRES 1 B 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 B 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 B 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 B 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 B 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 B 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 B 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 B 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 B 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 B 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 B 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 B 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 B 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 B 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 B 183 CYS SEQRES 1 A 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 A 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 A 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 A 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 A 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 A 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 A 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 A 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 A 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 A 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 A 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 A 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 A 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 A 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 A 183 CYS SEQRES 1 C 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 C 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 C 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 C 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 C 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 C 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 C 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 C 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 C 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 C 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 C 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 C 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 C 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 C 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 C 183 CYS SEQRES 1 D 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 D 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 D 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 D 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 D 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 D 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 D 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 D 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 D 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 D 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 D 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 D 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 D 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 D 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 D 183 CYS HET 64Z A 201 29 HET 64Z A 202 29 HET 64Z C 201 29 HET 64Z D 201 29 HETNAM 64Z GERANIOL FORMUL 5 64Z 4(C10 H18 O) HELIX 1 AA1 TYR B 6 GLY B 10 5 5 HELIX 2 AA2 PRO B 20 PHE B 24 5 5 HELIX 3 AA3 SER B 26 GLU B 43 1 18 HELIX 4 AA4 SER B 49 LEU B 76 1 28 HELIX 5 AA5 ASP B 78 GLY B 111 1 34 HELIX 6 AA6 GLY B 111 THR B 128 1 18 HELIX 7 AA7 PRO B 129 ARG B 133 5 5 HELIX 8 AA8 TYR A 6 GLY A 10 5 5 HELIX 9 AA9 THR A 12 SER A 17 1 6 HELIX 10 AB1 PRO A 20 PHE A 24 5 5 HELIX 11 AB2 SER A 26 GLU A 43 1 18 HELIX 12 AB3 SER A 49 LEU A 76 1 28 HELIX 13 AB4 ASP A 78 GLY A 111 1 34 HELIX 14 AB5 GLY A 111 THR A 128 1 18 HELIX 15 AB6 PRO A 129 ARG A 133 5 5 HELIX 16 AB7 TYR C 6 GLY C 10 5 5 HELIX 17 AB8 THR C 12 SER C 17 1 6 HELIX 18 AB9 PHE C 18 LEU C 19 5 2 HELIX 19 AC1 PRO C 20 PHE C 24 5 5 HELIX 20 AC2 SER C 26 GLU C 43 1 18 HELIX 21 AC3 SER C 49 LEU C 76 1 28 HELIX 22 AC4 ASP C 78 GLY C 111 1 34 HELIX 23 AC5 GLY C 111 THR C 128 1 18 HELIX 24 AC6 PRO C 129 ARG C 133 5 5 HELIX 25 AC7 THR D 12 PHE D 18 1 7 HELIX 26 AC8 SER D 26 GLU D 43 1 18 HELIX 27 AC9 SER D 49 LEU D 76 1 28 HELIX 28 AD1 ASP D 78 PHE D 110 1 33 HELIX 29 AD2 GLY D 111 THR D 128 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000