data_8PWR # _entry.id 8PWR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8PWR pdb_00008pwr 10.2210/pdb8pwr/pdb WWPDB D_1292132112 ? ? BMRB 34836 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-01-17 2 'Structure model' 1 1 2024-02-07 3 'Structure model' 1 2 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_citation_author.identifier_ORCID' 11 2 'Structure model' '_citation_author.name' 12 3 'Structure model' '_citation.journal_volume' 13 3 'Structure model' '_citation.page_first' 14 3 'Structure model' '_citation.page_last' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2024-01-17 _pdbx_database_PDB_obs_spr.pdb_id 8PWR _pdbx_database_PDB_obs_spr.replace_pdb_id 6QHI _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8PWR _pdbx_database_status.recvd_initial_deposition_date 2023-07-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'TINA-conjugated antiparallel DNA triplex' _pdbx_database_related.db_id 34836 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 3 _pdbx_contact_author.email cgonzalez@iqfr.csic.es _pdbx_contact_author.name_first Carlos _pdbx_contact_author.name_last Gonzalez _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8796-1282 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Garavis, M.' 1 0000-0003-1889-1713 'Edwards, P.J.B.' 2 0000-0003-3776-7582 'Serrano-Chacon, I.' 3 0000-0002-4303-9349 'Doluca, O.' 4 0000-0003-0412-6148 'Filichev, V.V.' 5 0000-0002-7383-3025 'Gonzalez, C.' 6 0000-0001-8796-1282 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 2686 _citation.page_last 2697 _citation.title ;Understanding intercalative modulation of G-rich sequence folding: solution structure of a TINA-conjugated antiparallel DNA triplex. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkae028 _citation.pdbx_database_id_PubMed 38281138 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Garavis, M.' 1 0000-0003-1889-1713 primary 'Edwards, P.J.B.' 2 ? primary 'Serrano-Chacon, I.' 3 0000-0002-4303-9349 primary 'Doluca, O.' 4 0000-0003-0412-6148 primary 'Filichev, V.V.' 5 ? primary 'Gonzalez, C.' 6 0000-0001-8796-1282 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*CP*CP*TP*CP*CP*T)-3') ; 2024.348 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*GP*GP*AP*GP*GP*A)-3') ; 2211.486 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*GP*GP*TP*GP*(J32)P*GP*T)-3') ; 2636.882 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DC)(DC)(DT)(DC)(DC)(DT)' TCCTCCT A ? 2 polydeoxyribonucleotide no no '(DA)(DG)(DG)(DA)(DG)(DG)(DA)' AGGAGGA B ? 3 polydeoxyribonucleotide no yes '(DT)(DG)(DG)(DT)(DG)(X0K)(DG)(DT)' TGGTGXGT C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DC n 1 4 DT n 1 5 DC n 1 6 DC n 1 7 DT n 2 1 DA n 2 2 DG n 2 3 DG n 2 4 DA n 2 5 DG n 2 6 DG n 2 7 DA n 3 1 DT n 3 2 DG n 3 3 DG n 3 4 DT n 3 5 DG n 3 6 X0K n 3 7 DG n 3 8 DT n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 7 'Homo sapiens' ? 9606 ? 2 1 sample 1 7 'Homo sapiens' ? 9606 ? 3 1 sample 1 8 'Homo sapiens' ? 9606 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 X0K non-polymer . '[(2~{S})-2-oxidanyl-3-[[4-(2-pyren-1-ylethynyl)phenyl]methoxy]propyl] dihydrogen phosphite' ? 'C28 H23 O5 P' 470.453 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n B 2 1 DA 1 8 8 DA DA B . n B 2 2 DG 2 9 9 DG DG B . n B 2 3 DG 3 10 10 DG DG B . n B 2 4 DA 4 11 11 DA DA B . n B 2 5 DG 5 12 12 DG DG B . n B 2 6 DG 6 13 13 DG DG B . n B 2 7 DA 7 14 14 DA DA B . n C 3 1 DT 1 15 15 DT DT C . n C 3 2 DG 2 16 16 DG DG C . n C 3 3 DG 3 17 17 DG DG C . n C 3 4 DT 4 18 18 DT DT C . n C 3 5 DG 5 19 19 DG DG C . n C 3 6 X0K 6 20 20 X0K J32 C . n C 3 7 DG 7 21 21 DG DG C . n C 3 8 DT 8 22 22 DT DT C . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8PWR _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8PWR _struct.title 'TINA-conjugated antiparallel DNA triplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8PWR _struct_keywords.text 'Triplex, TINA, Antiparallel, Conjugate, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8PWR 8PWR ? 1 ? 1 2 PDB 8PWR 8PWR ? 2 ? 1 3 PDB 8PWR 8PWR ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8PWR A 1 ? 7 ? 8PWR 1 ? 7 ? 1 7 2 2 8PWR B 1 ? 7 ? 8PWR 8 ? 14 ? 8 14 3 3 8PWR C 1 ? 8 ? 8PWR 15 ? 22 ? 15 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details ;First strand is connected to second strand through a linker of six ethylenglycol units. The same linker is used to connect second with third strand. ; # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? C DG 5 "O3'" ? ? ? 1_555 C X0K 6 P ? ? C DG 19 C X0K 20 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale2 covale one ? C X0K 6 "O3'" ? ? ? 1_555 C DG 7 P ? ? C X0K 20 C DG 21 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 1 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 1 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 2 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 2 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 2 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 3 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 3 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 3 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 4 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 4 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 5 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 5 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 5 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 6 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 6 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 6 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 7 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 7 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 8 O2 ? ? B DA 8 C DT 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog20 hydrog ? ? B DA 1 N7 ? ? ? 1_555 C DT 8 N3 ? ? B DA 8 C DT 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? B DG 2 N7 ? ? ? 1_555 C DG 7 N1 ? ? B DG 9 C DG 21 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog22 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DG 7 N2 ? ? B DG 9 C DG 21 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog23 hydrog ? ? B DG 3 N7 ? ? ? 1_555 C DG 5 N1 ? ? B DG 10 C DG 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog24 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DG 5 N2 ? ? B DG 10 C DG 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog25 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 4 O2 ? ? B DA 11 C DT 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog26 hydrog ? ? B DA 4 N7 ? ? ? 1_555 C DT 4 N3 ? ? B DA 11 C DT 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog27 hydrog ? ? B DG 5 N7 ? ? ? 1_555 C DG 3 N1 ? ? B DG 12 C DG 17 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog28 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DG 3 N2 ? ? B DG 12 C DG 17 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog29 hydrog ? ? B DG 6 N7 ? ? ? 1_555 C DG 2 N1 ? ? B DG 13 C DG 16 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog30 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DG 2 N2 ? ? B DG 13 C DG 16 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog31 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 1 O2 ? ? B DA 14 C DT 15 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog32 hydrog ? ? B DA 7 N7 ? ? ? 1_555 C DT 1 N3 ? ? B DA 14 C DT 15 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" B DA 8 ? ? "C4'" B DA 8 ? ? 1.556 1.512 0.044 0.007 N 2 3 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.532 1.496 0.036 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.23 122.90 -3.67 0.60 N 2 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.83 122.90 -5.07 0.60 N 3 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.19 108.30 3.89 0.30 N 4 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.71 108.30 3.41 0.30 N 5 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.18 108.30 1.88 0.30 N 6 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 111.39 108.30 3.09 0.30 N 7 1 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 111.37 108.30 3.07 0.30 N 8 1 C6 C DT 15 ? ? C5 C DT 15 ? ? C7 C DT 15 ? ? 118.88 122.90 -4.02 0.60 N 9 1 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.68 108.30 3.38 0.30 N 10 1 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 111.33 108.30 3.03 0.30 N 11 1 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 164.61 119.70 44.91 1.20 Y 12 1 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.68 105.90 -6.22 0.80 N 13 1 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.60 108.30 2.30 0.30 N 14 2 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.50 122.90 -4.40 0.60 N 15 2 "C3'" A DT 1 ? ? "O3'" A DT 1 ? ? P A DC 2 ? ? 127.18 119.70 7.48 1.20 Y 16 2 "O3'" A DT 1 ? ? P A DC 2 ? ? "O5'" A DC 2 ? ? 145.91 104.00 41.91 1.90 Y 17 2 "O3'" A DT 1 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 84.49 105.20 -20.71 2.20 Y 18 2 "O3'" A DT 1 ? ? P A DC 2 ? ? OP1 A DC 2 ? ? 82.82 105.20 -22.38 2.20 Y 19 2 OP1 A DC 2 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 131.51 119.60 11.91 1.50 N 20 2 "O5'" A DC 2 ? ? P A DC 2 ? ? OP1 A DC 2 ? ? 83.06 105.70 -22.64 0.90 N 21 2 "O5'" A DC 2 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 81.98 105.70 -23.72 0.90 N 22 2 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.08 122.90 -4.82 0.60 N 23 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.20 108.30 3.90 0.30 N 24 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.88 108.30 3.58 0.30 N 25 2 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.22 122.90 -4.68 0.60 N 26 2 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.33 108.30 3.03 0.30 N 27 2 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.64 108.30 2.34 0.30 N 28 2 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.18 108.30 1.88 0.30 N 29 2 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.58 108.30 2.28 0.30 N 30 2 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 112.50 108.30 4.20 0.30 N 31 2 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 110.29 108.30 1.99 0.30 N 32 2 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 163.89 119.70 44.19 1.20 Y 33 2 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.42 105.90 -6.48 0.80 N 34 2 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.72 108.30 2.42 0.30 N 35 3 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.57 121.90 -4.33 0.70 N 36 3 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.24 122.90 -4.66 0.60 N 37 3 N3 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 113.19 118.00 -4.81 0.70 N 38 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.64 108.30 4.34 0.30 N 39 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.49 108.30 3.19 0.30 N 40 3 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.66 108.30 3.36 0.30 N 41 3 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.65 108.30 2.35 0.30 N 42 3 "O4'" B DA 11 ? ? "C1'" B DA 11 ? ? N9 B DA 11 ? ? 110.14 108.30 1.84 0.30 N 43 3 N1 B DA 11 ? ? C6 B DA 11 ? ? N6 B DA 11 ? ? 114.91 118.60 -3.69 0.60 N 44 3 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.95 108.30 2.65 0.30 N 45 3 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 112.16 108.30 3.86 0.30 N 46 3 C5 C DG 16 ? ? C6 C DG 16 ? ? N1 C DG 16 ? ? 115.40 111.50 3.90 0.50 N 47 3 N1 C DG 16 ? ? C6 C DG 16 ? ? O6 C DG 16 ? ? 112.85 119.90 -7.05 0.60 N 48 3 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 111.26 108.30 2.96 0.30 N 49 3 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 164.96 119.70 45.26 1.20 Y 50 3 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.65 105.90 -6.25 0.80 N 51 3 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.61 108.30 2.31 0.30 N 52 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.56 108.30 4.26 0.30 N 53 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.19 108.30 3.89 0.30 N 54 4 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.95 108.30 2.65 0.30 N 55 4 N1 B DA 11 ? ? C6 B DA 11 ? ? N6 B DA 11 ? ? 114.41 118.60 -4.19 0.60 N 56 4 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.78 108.30 2.48 0.30 N 57 4 C6 C DT 15 ? ? C5 C DT 15 ? ? C7 C DT 15 ? ? 118.71 122.90 -4.19 0.60 N 58 4 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.99 108.30 3.69 0.30 N 59 4 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 110.41 108.30 2.11 0.30 N 60 4 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 163.55 119.70 43.85 1.20 Y 61 4 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.90 105.90 -6.00 0.80 N 62 4 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.45 108.30 2.15 0.30 N 63 5 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.03 122.90 -3.87 0.60 N 64 5 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.00 122.90 -3.90 0.60 N 65 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.12 108.30 3.82 0.30 N 66 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.65 108.30 4.35 0.30 N 67 5 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.08 122.90 -3.82 0.60 N 68 5 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.40 108.30 3.10 0.30 N 69 5 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.98 108.30 2.68 0.30 N 70 5 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 110.84 108.30 2.54 0.30 N 71 5 C6 C DT 18 ? ? C5 C DT 18 ? ? C7 C DT 18 ? ? 119.29 122.90 -3.61 0.60 N 72 5 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 110.14 108.30 1.84 0.30 N 73 5 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 109.35 119.70 -10.35 1.20 Y 74 5 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.51 105.90 -6.39 0.80 N 75 5 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.63 108.30 2.33 0.30 N 76 6 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.18 122.90 -4.72 0.60 N 77 6 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.04 122.90 -3.86 0.60 N 78 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.49 108.30 4.19 0.30 N 79 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.62 108.30 4.32 0.30 N 80 6 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.04 122.90 -3.86 0.60 N 81 6 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.34 108.30 2.04 0.30 N 82 6 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.95 108.30 2.65 0.30 N 83 6 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.78 108.30 2.48 0.30 N 84 6 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 110.88 108.30 2.58 0.30 N 85 6 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 109.37 119.70 -10.33 1.20 Y 86 6 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 98.92 105.90 -6.98 0.80 N 87 6 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.91 108.30 2.61 0.30 N 88 7 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 117.17 122.90 -5.73 0.60 N 89 7 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.61 122.90 -4.29 0.60 N 90 7 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.76 108.30 4.46 0.30 N 91 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.49 108.30 4.19 0.30 N 92 7 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.24 122.90 -3.66 0.60 N 93 7 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.10 108.30 2.80 0.30 N 94 7 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.84 108.30 2.54 0.30 N 95 7 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.97 108.30 2.67 0.30 N 96 7 "O4'" C DT 15 ? ? "C1'" C DT 15 ? ? N1 C DT 15 ? ? 110.44 108.30 2.14 0.30 N 97 7 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.44 108.30 3.14 0.30 N 98 7 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 109.61 119.70 -10.09 1.20 Y 99 7 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.28 105.90 -6.62 0.80 N 100 7 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.67 108.30 2.37 0.30 N 101 8 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.24 122.90 -3.66 0.60 N 102 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.69 108.30 4.39 0.30 N 103 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.10 108.30 3.80 0.30 N 104 8 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.59 108.30 2.29 0.30 N 105 8 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 111.07 108.30 2.77 0.30 N 106 8 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.59 108.30 3.29 0.30 N 107 8 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 110.82 108.30 2.52 0.30 N 108 8 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 109.08 119.70 -10.62 1.20 Y 109 8 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.90 105.90 -6.00 0.80 N 110 9 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.16 122.90 -3.74 0.60 N 111 9 "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 109.89 106.00 3.89 0.60 N 112 9 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.34 122.90 -4.56 0.60 N 113 9 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.60 108.30 4.30 0.30 N 114 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.18 108.30 3.88 0.30 N 115 9 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.86 122.90 -4.04 0.60 N 116 9 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.81 108.30 3.51 0.30 N 117 9 N1 B DA 11 ? ? C6 B DA 11 ? ? N6 B DA 11 ? ? 114.27 118.60 -4.33 0.60 N 118 9 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.16 108.30 1.86 0.30 N 119 9 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 111.21 108.30 2.91 0.30 N 120 9 C6 C DT 15 ? ? C5 C DT 15 ? ? C7 C DT 15 ? ? 119.24 122.90 -3.66 0.60 N 121 9 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.11 108.30 2.81 0.30 N 122 9 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 108.75 119.70 -10.95 1.20 Y 123 9 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 98.90 105.90 -7.00 0.80 N 124 9 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.35 108.30 2.05 0.30 N 125 10 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.01 122.90 -4.89 0.60 N 126 10 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.92 122.90 -4.98 0.60 N 127 10 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.41 108.30 4.11 0.30 N 128 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.17 108.30 3.87 0.30 N 129 10 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.89 122.90 -4.01 0.60 N 130 10 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.43 108.30 3.13 0.30 N 131 10 N1 B DA 11 ? ? C6 B DA 11 ? ? N6 B DA 11 ? ? 114.48 118.60 -4.12 0.60 N 132 10 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.81 108.30 2.51 0.30 N 133 10 C6 C DT 15 ? ? C5 C DT 15 ? ? C7 C DT 15 ? ? 118.80 122.90 -4.10 0.60 N 134 10 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.35 108.30 3.05 0.30 N 135 10 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 108.67 119.70 -11.03 1.20 Y 136 10 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 98.50 105.90 -7.40 0.80 N 137 10 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.64 108.30 2.34 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 7 ? ? 0.109 'SIDE CHAIN' 2 1 DA B 11 ? ? 0.054 'SIDE CHAIN' 3 1 DT C 15 ? ? 0.075 'SIDE CHAIN' 4 2 DC A 3 ? ? 0.060 'SIDE CHAIN' 5 2 DT A 7 ? ? 0.100 'SIDE CHAIN' 6 2 DG B 9 ? ? 0.113 'SIDE CHAIN' 7 2 DA B 11 ? ? 0.055 'SIDE CHAIN' 8 2 DT C 15 ? ? 0.094 'SIDE CHAIN' 9 2 DG C 16 ? ? 0.056 'SIDE CHAIN' 10 2 DT C 18 ? ? 0.070 'SIDE CHAIN' 11 3 DT A 1 ? ? 0.070 'SIDE CHAIN' 12 3 DC A 3 ? ? 0.076 'SIDE CHAIN' 13 3 DT A 7 ? ? 0.092 'SIDE CHAIN' 14 3 DG B 9 ? ? 0.086 'SIDE CHAIN' 15 3 DT C 15 ? ? 0.082 'SIDE CHAIN' 16 3 DT C 18 ? ? 0.096 'SIDE CHAIN' 17 4 DT A 7 ? ? 0.079 'SIDE CHAIN' 18 4 DG B 9 ? ? 0.089 'SIDE CHAIN' 19 4 DT C 15 ? ? 0.095 'SIDE CHAIN' 20 4 DG C 16 ? ? 0.062 'SIDE CHAIN' 21 4 DT C 18 ? ? 0.094 'SIDE CHAIN' 22 5 DT A 1 ? ? 0.086 'SIDE CHAIN' 23 5 DT A 7 ? ? 0.096 'SIDE CHAIN' 24 5 DG B 9 ? ? 0.101 'SIDE CHAIN' 25 5 DT C 15 ? ? 0.102 'SIDE CHAIN' 26 5 DT C 18 ? ? 0.112 'SIDE CHAIN' 27 6 DT A 7 ? ? 0.097 'SIDE CHAIN' 28 6 DG B 9 ? ? 0.064 'SIDE CHAIN' 29 6 DT C 15 ? ? 0.089 'SIDE CHAIN' 30 6 DT C 18 ? ? 0.105 'SIDE CHAIN' 31 7 DT A 7 ? ? 0.080 'SIDE CHAIN' 32 7 DG B 9 ? ? 0.070 'SIDE CHAIN' 33 7 DT C 15 ? ? 0.073 'SIDE CHAIN' 34 7 DT C 18 ? ? 0.110 'SIDE CHAIN' 35 8 DT A 7 ? ? 0.088 'SIDE CHAIN' 36 8 DG B 9 ? ? 0.061 'SIDE CHAIN' 37 8 DT C 15 ? ? 0.089 'SIDE CHAIN' 38 8 DT C 18 ? ? 0.074 'SIDE CHAIN' 39 8 DG C 21 ? ? 0.060 'SIDE CHAIN' 40 8 DT C 22 ? ? 0.070 'SIDE CHAIN' 41 9 DT A 7 ? ? 0.095 'SIDE CHAIN' 42 9 DG B 9 ? ? 0.071 'SIDE CHAIN' 43 9 DT C 15 ? ? 0.087 'SIDE CHAIN' 44 9 DT C 18 ? ? 0.071 'SIDE CHAIN' 45 10 DT A 1 ? ? 0.064 'SIDE CHAIN' 46 10 DC A 3 ? ? 0.060 'SIDE CHAIN' 47 10 DT A 7 ? ? 0.093 'SIDE CHAIN' 48 10 DG B 9 ? ? 0.063 'SIDE CHAIN' 49 10 DT C 15 ? ? 0.090 'SIDE CHAIN' 50 10 DT C 18 ? ? 0.088 'SIDE CHAIN' # _pdbx_entry_details.entry_id 8PWR _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 8PWR _pdbx_nmr_ensemble.conformers_calculated_total_number 15 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8PWR _pdbx_nmr_representative.conformer_id 2 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.5 mM Triplex-TINA, 90% H2O/10% D2O' '90% H2O/10% D2O' 1H_sample solution ? 2 '0.5 mM Triplex-TINA, 90% H2O/10% D2O' '90% H2O/10% D2O' 1D_sample solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 Triplex-TINA 0.5 ? mM 'natural abundance' 2 Triplex-TINA 0.5 ? mM 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 279.6 atm 1 7 125 ? ? mM Triplex-TINA_5 ? pH ? ? K 2 300.4 atm 1 7 125 ? ? mM Triplex-TINA_25 ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 2 '2D 1H-1H NOESY' 1 isotropic 2 1 2 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-1H NOESY' 1 isotropic 4 2 2 '2D DQF-COSY' 2 isotropic 5 2 2 '2D 1H-1H NOESY' 1 isotropic 6 2 2 '2D 1H-1H TOCSY' 1 isotropic 7 2 1 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_refine.entry_id 8PWR _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'peak picking' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL' 2 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 5 'chemical shift assignment' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL' 4 collection TopSpin ? 'Bruker Biospin' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 X0K C1 C Y N 144 X0K C2 C Y N 145 X0K C3 C Y N 146 X0K C4 C Y N 147 X0K C5 C Y N 148 X0K C6 C Y N 149 X0K C7 C Y N 150 X0K P P N N 151 X0K OP1 O N N 152 X0K OP2 O N N 153 X0K "O5'" O N N 154 X0K "C2'" C N S 155 X0K "C3'" C N N 156 X0K "C4'" C N N 157 X0K C12 C Y N 158 X0K C11 C Y N 159 X0K C14 C Y N 160 X0K C13 C Y N 161 X0K C15 C N N 162 X0K C16 C N N 163 X0K C8 C Y N 164 X0K C8A C Y N 165 X0K C3A C Y N 166 X0K C5A C Y N 167 X0K C10 C Y N 168 X0K C9 C Y N 169 X0K "C1'" C N N 170 X0K "O3'" O N N 171 X0K "O1'" O N N 172 X0K C12A C Y N 173 X0K C14A C Y N 174 X0K C10A C Y N 175 X0K C10C C Y N 176 X0K C10B C Y N 177 X0K H1 H N N 178 X0K H2 H N N 179 X0K H3 H N N 180 X0K H4 H N N 181 X0K H5 H N N 182 X0K H7 H N N 183 X0K H6 H N N 184 X0K H15 H N N 185 X0K "H2'" H N N 186 X0K "H3''" H N N 187 X0K "H3'" H N N 188 X0K "H4'" H N N 189 X0K "H4''" H N N 190 X0K H12 H N N 191 X0K H11 H N N 192 X0K H14 H N N 193 X0K H13 H N N 194 X0K H8 H N N 195 X0K H10 H N N 196 X0K H9 H N N 197 X0K "H1''" H N N 198 X0K "H1'" H N N 199 X0K H16 H N N 200 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 X0K C1 C2 doub Y N 150 X0K C1 C10A sing Y N 151 X0K C2 C3 sing Y N 152 X0K C10 C10A doub Y N 153 X0K C10 C9 sing Y N 154 X0K C10A C10B sing Y N 155 X0K C3 C3A doub Y N 156 X0K C9 C8A doub Y N 157 X0K C10B C3A sing Y N 158 X0K C10B C10C doub Y N 159 X0K C3A C4 sing Y N 160 X0K C8A C10C sing Y N 161 X0K C8A C8 sing Y N 162 X0K C10C C5A sing Y N 163 X0K C4 C5 doub Y N 164 X0K C8 C7 doub Y N 165 X0K C5A C5 sing Y N 166 X0K C5A C6 doub Y N 167 X0K C7 C6 sing Y N 168 X0K C6 C16 sing N N 169 X0K C16 C15 trip N N 170 X0K C15 C14A sing N N 171 X0K C14A C11 doub Y N 172 X0K C14A C14 sing Y N 173 X0K C11 C12 sing Y N 174 X0K C14 C13 doub Y N 175 X0K C12 C12A doub Y N 176 X0K C13 C12A sing Y N 177 X0K C12A "C4'" sing N N 178 X0K "C4'" "O1'" sing N N 179 X0K OP1 P sing N N 180 X0K P OP2 sing N N 181 X0K P "O5'" sing N N 182 X0K "O1'" "C3'" sing N N 183 X0K "C1'" "O5'" sing N N 184 X0K "C1'" "C2'" sing N N 185 X0K "C3'" "C2'" sing N N 186 X0K "C2'" "O3'" sing N N 187 X0K C1 H1 sing N N 188 X0K C2 H2 sing N N 189 X0K C3 H3 sing N N 190 X0K C4 H4 sing N N 191 X0K C5 H5 sing N N 192 X0K C7 H7 sing N N 193 X0K OP1 H6 sing N N 194 X0K OP2 H15 sing N N 195 X0K "C2'" "H2'" sing N N 196 X0K "C3'" "H3''" sing N N 197 X0K "C3'" "H3'" sing N N 198 X0K "C4'" "H4'" sing N N 199 X0K "C4'" "H4''" sing N N 200 X0K C12 H12 sing N N 201 X0K C11 H11 sing N N 202 X0K C14 H14 sing N N 203 X0K C13 H13 sing N N 204 X0K C8 H8 sing N N 205 X0K C10 H10 sing N N 206 X0K C9 H9 sing N N 207 X0K "C1'" "H1''" sing N N 208 X0K "C1'" "H1'" sing N N 209 X0K "O3'" H16 sing N N 210 # _ndb_struct_conf_na.entry_id 8PWR _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 7 1_555 0.029 -0.192 -0.434 -1.934 6.142 0.006 1 A_DT1:DA14_B A 1 ? B 14 ? 20 1 1 A DC 2 1_555 B DG 6 1_555 0.556 -0.308 -0.366 -4.279 6.889 -1.886 2 A_DC2:DG13_B A 2 ? B 13 ? 19 1 1 A DC 3 1_555 B DG 5 1_555 0.579 -0.341 -0.371 1.923 4.819 -1.487 3 A_DC3:DG12_B A 3 ? B 12 ? 19 1 1 A DT 4 1_555 B DA 4 1_555 0.270 -0.222 0.413 -4.621 -2.075 0.841 4 A_DT4:DA11_B A 4 ? B 11 ? 20 1 1 A DC 5 1_555 B DG 3 1_555 0.713 -0.349 -0.489 10.531 -14.595 1.891 5 A_DC5:DG10_B A 5 ? B 10 ? 19 1 1 A DC 6 1_555 B DG 2 1_555 0.476 -0.290 -0.065 -6.688 -0.589 -1.887 6 A_DC6:DG9_B A 6 ? B 9 ? 19 1 1 A DT 7 1_555 B DA 1 1_555 0.335 -0.188 0.187 -5.806 -3.249 0.884 7 A_DT7:DA8_B A 7 ? B 8 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 7 1_555 A DC 2 1_555 B DG 6 1_555 -0.730 -0.982 3.446 -0.114 3.988 33.230 -2.388 1.248 3.312 6.943 0.198 33.462 1 AA_DT1DC2:DG13DA14_BB A 1 ? B 14 ? A 2 ? B 13 ? 1 A DC 2 1_555 B DG 6 1_555 A DC 3 1_555 B DG 5 1_555 -0.417 -0.696 3.235 0.159 5.433 33.901 -2.008 0.731 3.087 9.243 -0.271 34.322 2 AA_DC2DC3:DG12DG13_BB A 2 ? B 13 ? A 3 ? B 12 ? 1 A DC 3 1_555 B DG 5 1_555 A DT 4 1_555 B DA 4 1_555 0.158 -1.756 3.494 -4.325 1.793 28.781 -3.900 -1.303 3.322 3.578 8.629 29.151 3 AA_DC3DT4:DA11DG12_BB A 3 ? B 12 ? A 4 ? B 11 ? 1 A DT 4 1_555 B DA 4 1_555 A DC 5 1_555 B DG 3 1_555 0.176 -0.497 2.784 11.136 0.849 35.587 -0.876 0.994 2.704 1.349 -17.690 37.244 4 AA_DT4DC5:DG10DA11_BB A 4 ? B 11 ? A 5 ? B 10 ? 1 A DC 6 1_555 B DG 2 1_555 A DT 7 1_555 B DA 1 1_555 0.318 -0.897 3.337 -1.387 -0.843 24.688 -1.832 -1.174 3.342 -1.968 3.239 24.741 5 AA_DC6DT7:DA8DG9_BB A 6 ? B 9 ? A 7 ? B 8 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Spanish Ministry of Economy and Competitiveness' Spain BFU2017-89707-P 1 'Spanish Ministry of Science, Innovation, and Universities' Spain PID2020-116620GB-I00 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id X0K _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id X0K _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 600 ? 2 AVANCE ? Bruker 800 ? # _atom_sites.entry_id 8PWR _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_