data_8PWR
#
_entry.id 8PWR
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 8PWR pdb_00008pwr 10.2210/pdb8pwr/pdb
WWPDB D_1292132112 ? ?
BMRB 34836 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2024-01-17
2 'Structure model' 1 1 2024-02-07
3 'Structure model' 1 2 2024-03-27
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 3 'Structure model' citation
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_ASTM'
4 2 'Structure model' '_citation.journal_id_CSD'
5 2 'Structure model' '_citation.journal_id_ISSN'
6 2 'Structure model' '_citation.pdbx_database_id_DOI'
7 2 'Structure model' '_citation.pdbx_database_id_PubMed'
8 2 'Structure model' '_citation.title'
9 2 'Structure model' '_citation.year'
10 2 'Structure model' '_citation_author.identifier_ORCID'
11 2 'Structure model' '_citation_author.name'
12 3 'Structure model' '_citation.journal_volume'
13 3 'Structure model' '_citation.page_first'
14 3 'Structure model' '_citation.page_last'
#
_pdbx_database_PDB_obs_spr.id SPRSDE
_pdbx_database_PDB_obs_spr.date 2024-01-17
_pdbx_database_PDB_obs_spr.pdb_id 8PWR
_pdbx_database_PDB_obs_spr.replace_pdb_id 6QHI
_pdbx_database_PDB_obs_spr.details ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr .
_pdbx_database_status.entry_id 8PWR
_pdbx_database_status.recvd_initial_deposition_date 2023-07-21
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.status_code_cs .
_pdbx_database_status.status_code_nmr_data REL
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
_pdbx_database_related.db_name BMRB
_pdbx_database_related.details 'TINA-conjugated antiparallel DNA triplex'
_pdbx_database_related.db_id 34836
_pdbx_database_related.content_type unspecified
#
_pdbx_contact_author.id 3
_pdbx_contact_author.email cgonzalez@iqfr.csic.es
_pdbx_contact_author.name_first Carlos
_pdbx_contact_author.name_last Gonzalez
_pdbx_contact_author.name_mi ?
_pdbx_contact_author.role 'principal investigator/group leader'
_pdbx_contact_author.identifier_ORCID 0000-0001-8796-1282
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Garavis, M.' 1 0000-0003-1889-1713
'Edwards, P.J.B.' 2 0000-0003-3776-7582
'Serrano-Chacon, I.' 3 0000-0002-4303-9349
'Doluca, O.' 4 0000-0003-0412-6148
'Filichev, V.V.' 5 0000-0002-7383-3025
'Gonzalez, C.' 6 0000-0001-8796-1282
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_id_ASTM NARHAD
_citation.journal_id_CSD 0389
_citation.journal_id_ISSN 1362-4962
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 52
_citation.language ?
_citation.page_first 2686
_citation.page_last 2697
_citation.title
;Understanding intercalative modulation of G-rich sequence folding: solution structure of a TINA-conjugated antiparallel DNA triplex.
;
_citation.year 2024
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1093/nar/gkae028
_citation.pdbx_database_id_PubMed 38281138
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Garavis, M.' 1 0000-0003-1889-1713
primary 'Edwards, P.J.B.' 2 ?
primary 'Serrano-Chacon, I.' 3 0000-0002-4303-9349
primary 'Doluca, O.' 4 0000-0003-0412-6148
primary 'Filichev, V.V.' 5 ?
primary 'Gonzalez, C.' 6 0000-0001-8796-1282
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*TP*CP*CP*TP*CP*CP*T)-3')
;
2024.348 1 ? ? ? ?
2 polymer syn
;DNA (5'-D(*AP*GP*GP*AP*GP*GP*A)-3')
;
2211.486 1 ? ? ? ?
3 polymer syn
;DNA (5'-D(*TP*GP*GP*TP*GP*(J32)P*GP*T)-3')
;
2636.882 1 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polydeoxyribonucleotide no no '(DT)(DC)(DC)(DT)(DC)(DC)(DT)' TCCTCCT A ?
2 polydeoxyribonucleotide no no '(DA)(DG)(DG)(DA)(DG)(DG)(DA)' AGGAGGA B ?
3 polydeoxyribonucleotide no yes '(DT)(DG)(DG)(DT)(DG)(X0K)(DG)(DT)' TGGTGXGT C ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DT n
1 2 DC n
1 3 DC n
1 4 DT n
1 5 DC n
1 6 DC n
1 7 DT n
2 1 DA n
2 2 DG n
2 3 DG n
2 4 DA n
2 5 DG n
2 6 DG n
2 7 DA n
3 1 DT n
3 2 DG n
3 3 DG n
3 4 DT n
3 5 DG n
3 6 X0K n
3 7 DG n
3 8 DT n
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
1 1 sample 1 7 'Homo sapiens' ? 9606 ?
2 1 sample 1 7 'Homo sapiens' ? 9606 ?
3 1 sample 1 8 'Homo sapiens' ? 9606 ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ?
'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ?
'C10 H15 N2 O8 P' 322.208
X0K non-polymer . '[(2~{S})-2-oxidanyl-3-[[4-(2-pyren-1-ylethynyl)phenyl]methoxy]propyl] dihydrogen phosphite' ? 'C28 H23 O5 P'
470.453
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DT 1 1 1 DT DT A . n
A 1 2 DC 2 2 2 DC DC A . n
A 1 3 DC 3 3 3 DC DC A . n
A 1 4 DT 4 4 4 DT DT A . n
A 1 5 DC 5 5 5 DC DC A . n
A 1 6 DC 6 6 6 DC DC A . n
A 1 7 DT 7 7 7 DT DT A . n
B 2 1 DA 1 8 8 DA DA B . n
B 2 2 DG 2 9 9 DG DG B . n
B 2 3 DG 3 10 10 DG DG B . n
B 2 4 DA 4 11 11 DA DA B . n
B 2 5 DG 5 12 12 DG DG B . n
B 2 6 DG 6 13 13 DG DG B . n
B 2 7 DA 7 14 14 DA DA B . n
C 3 1 DT 1 15 15 DT DT C . n
C 3 2 DG 2 16 16 DG DG C . n
C 3 3 DG 3 17 17 DG DG C . n
C 3 4 DT 4 18 18 DT DT C . n
C 3 5 DG 5 19 19 DG DG C . n
C 3 6 X0K 6 20 20 X0K J32 C . n
C 3 7 DG 7 21 21 DG DG C . n
C 3 8 DT 8 22 22 DT DT C . n
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 8PWR
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'SOLUTION NMR'
_exptl.method_details ?
#
_struct.entry_id 8PWR
_struct.title 'TINA-conjugated antiparallel DNA triplex'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 8PWR
_struct_keywords.text 'Triplex, TINA, Antiparallel, Conjugate, DNA'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 PDB 8PWR 8PWR ? 1 ? 1
2 PDB 8PWR 8PWR ? 2 ? 1
3 PDB 8PWR 8PWR ? 3 ? 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 8PWR A 1 ? 7 ? 8PWR 1 ? 7 ? 1 7
2 2 8PWR B 1 ? 7 ? 8PWR 8 ? 14 ? 8 14
3 3 8PWR C 1 ? 8 ? 8PWR 15 ? 22 ? 15 22
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details trimeric
_pdbx_struct_assembly.oligomeric_count 3
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints'
_pdbx_struct_assembly_auth_evidence.details
;First strand is connected to second strand through a linker of six ethylenglycol units. The same linker is used to connect second with third strand.
;
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0
_pdbx_struct_oper_list.matrix[1][2] 0.0
_pdbx_struct_oper_list.matrix[1][3] 0.0
_pdbx_struct_oper_list.vector[1] 0.0
_pdbx_struct_oper_list.matrix[2][1] 0.0
_pdbx_struct_oper_list.matrix[2][2] 1.0
_pdbx_struct_oper_list.matrix[2][3] 0.0
_pdbx_struct_oper_list.vector[2] 0.0
_pdbx_struct_oper_list.matrix[3][1] 0.0
_pdbx_struct_oper_list.matrix[3][2] 0.0
_pdbx_struct_oper_list.matrix[3][3] 1.0
_pdbx_struct_oper_list.vector[3] 0.0
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale one ? C DG 5 "O3'" ? ? ? 1_555 C X0K 6 P ? ? C DG 19 C X0K 20 1_555 ? ? ? ? ? ? ? 1.618 ? ?
covale2 covale one ? C X0K 6 "O3'" ? ? ? 1_555 C DG 7 P ? ? C X0K 20 C DG 21 1_555 ? ? ? ? ? ? ? 1.611 ? ?
hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 1 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 1 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 2 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 2 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 2 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 3 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 3 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 3 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 4 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 4 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 5 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 5 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 5 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 6 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 6 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 6 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 7 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 7 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 8 O2 ? ? B DA 8 C DT 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog20 hydrog ? ? B DA 1 N7 ? ? ? 1_555 C DT 8 N3 ? ? B DA 8 C DT 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog21 hydrog ? ? B DG 2 N7 ? ? ? 1_555 C DG 7 N1 ? ? B DG 9 C DG 21 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
hydrog22 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DG 7 N2 ? ? B DG 9 C DG 21 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
hydrog23 hydrog ? ? B DG 3 N7 ? ? ? 1_555 C DG 5 N1 ? ? B DG 10 C DG 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
hydrog24 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DG 5 N2 ? ? B DG 10 C DG 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
hydrog25 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 4 O2 ? ? B DA 11 C DT 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog26 hydrog ? ? B DA 4 N7 ? ? ? 1_555 C DT 4 N3 ? ? B DA 11 C DT 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog27 hydrog ? ? B DG 5 N7 ? ? ? 1_555 C DG 3 N1 ? ? B DG 12 C DG 17 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
hydrog28 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DG 3 N2 ? ? B DG 12 C DG 17 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
hydrog29 hydrog ? ? B DG 6 N7 ? ? ? 1_555 C DG 2 N1 ? ? B DG 13 C DG 16 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
hydrog30 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DG 2 N2 ? ? B DG 13 C DG 16 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
hydrog31 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 1 O2 ? ? B DA 14 C DT 15 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog32 hydrog ? ? B DA 7 N7 ? ? ? 1_555 C DT 1 N3 ? ? B DA 14 C DT 15 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C5'" B DA 8 ? ? "C4'" B DA 8 ? ? 1.556 1.512 0.044 0.007 N
2 3 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.532 1.496 0.036 0.006 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.23 122.90 -3.67 0.60 N
2 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.83 122.90 -5.07 0.60 N
3 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.19 108.30 3.89 0.30 N
4 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.71 108.30 3.41 0.30 N
5 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.18 108.30 1.88 0.30 N
6 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 111.39 108.30 3.09 0.30 N
7 1 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 111.37 108.30 3.07 0.30 N
8 1 C6 C DT 15 ? ? C5 C DT 15 ? ? C7 C DT 15 ? ? 118.88 122.90 -4.02 0.60 N
9 1 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.68 108.30 3.38 0.30 N
10 1 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 111.33 108.30 3.03 0.30 N
11 1 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 164.61 119.70 44.91 1.20 Y
12 1 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.68 105.90 -6.22 0.80 N
13 1 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.60 108.30 2.30 0.30 N
14 2 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.50 122.90 -4.40 0.60 N
15 2 "C3'" A DT 1 ? ? "O3'" A DT 1 ? ? P A DC 2 ? ? 127.18 119.70 7.48 1.20 Y
16 2 "O3'" A DT 1 ? ? P A DC 2 ? ? "O5'" A DC 2 ? ? 145.91 104.00 41.91 1.90 Y
17 2 "O3'" A DT 1 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 84.49 105.20 -20.71 2.20 Y
18 2 "O3'" A DT 1 ? ? P A DC 2 ? ? OP1 A DC 2 ? ? 82.82 105.20 -22.38 2.20 Y
19 2 OP1 A DC 2 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 131.51 119.60 11.91 1.50 N
20 2 "O5'" A DC 2 ? ? P A DC 2 ? ? OP1 A DC 2 ? ? 83.06 105.70 -22.64 0.90 N
21 2 "O5'" A DC 2 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 81.98 105.70 -23.72 0.90 N
22 2 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.08 122.90 -4.82 0.60 N
23 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.20 108.30 3.90 0.30 N
24 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.88 108.30 3.58 0.30 N
25 2 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.22 122.90 -4.68 0.60 N
26 2 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.33 108.30 3.03 0.30 N
27 2 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.64 108.30 2.34 0.30 N
28 2 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.18 108.30 1.88 0.30 N
29 2 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.58 108.30 2.28 0.30 N
30 2 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 112.50 108.30 4.20 0.30 N
31 2 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 110.29 108.30 1.99 0.30 N
32 2 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 163.89 119.70 44.19 1.20 Y
33 2 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.42 105.90 -6.48 0.80 N
34 2 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.72 108.30 2.42 0.30 N
35 3 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.57 121.90 -4.33 0.70 N
36 3 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.24 122.90 -4.66 0.60 N
37 3 N3 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 113.19 118.00 -4.81 0.70 N
38 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.64 108.30 4.34 0.30 N
39 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.49 108.30 3.19 0.30 N
40 3 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.66 108.30 3.36 0.30 N
41 3 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.65 108.30 2.35 0.30 N
42 3 "O4'" B DA 11 ? ? "C1'" B DA 11 ? ? N9 B DA 11 ? ? 110.14 108.30 1.84 0.30 N
43 3 N1 B DA 11 ? ? C6 B DA 11 ? ? N6 B DA 11 ? ? 114.91 118.60 -3.69 0.60 N
44 3 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.95 108.30 2.65 0.30 N
45 3 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 112.16 108.30 3.86 0.30 N
46 3 C5 C DG 16 ? ? C6 C DG 16 ? ? N1 C DG 16 ? ? 115.40 111.50 3.90 0.50 N
47 3 N1 C DG 16 ? ? C6 C DG 16 ? ? O6 C DG 16 ? ? 112.85 119.90 -7.05 0.60 N
48 3 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 111.26 108.30 2.96 0.30 N
49 3 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 164.96 119.70 45.26 1.20 Y
50 3 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.65 105.90 -6.25 0.80 N
51 3 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.61 108.30 2.31 0.30 N
52 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.56 108.30 4.26 0.30 N
53 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.19 108.30 3.89 0.30 N
54 4 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.95 108.30 2.65 0.30 N
55 4 N1 B DA 11 ? ? C6 B DA 11 ? ? N6 B DA 11 ? ? 114.41 118.60 -4.19 0.60 N
56 4 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.78 108.30 2.48 0.30 N
57 4 C6 C DT 15 ? ? C5 C DT 15 ? ? C7 C DT 15 ? ? 118.71 122.90 -4.19 0.60 N
58 4 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.99 108.30 3.69 0.30 N
59 4 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 110.41 108.30 2.11 0.30 N
60 4 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 163.55 119.70 43.85 1.20 Y
61 4 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.90 105.90 -6.00 0.80 N
62 4 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.45 108.30 2.15 0.30 N
63 5 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.03 122.90 -3.87 0.60 N
64 5 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.00 122.90 -3.90 0.60 N
65 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.12 108.30 3.82 0.30 N
66 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.65 108.30 4.35 0.30 N
67 5 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.08 122.90 -3.82 0.60 N
68 5 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.40 108.30 3.10 0.30 N
69 5 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.98 108.30 2.68 0.30 N
70 5 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 110.84 108.30 2.54 0.30 N
71 5 C6 C DT 18 ? ? C5 C DT 18 ? ? C7 C DT 18 ? ? 119.29 122.90 -3.61 0.60 N
72 5 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 110.14 108.30 1.84 0.30 N
73 5 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 109.35 119.70 -10.35 1.20 Y
74 5 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.51 105.90 -6.39 0.80 N
75 5 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.63 108.30 2.33 0.30 N
76 6 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.18 122.90 -4.72 0.60 N
77 6 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.04 122.90 -3.86 0.60 N
78 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.49 108.30 4.19 0.30 N
79 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.62 108.30 4.32 0.30 N
80 6 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.04 122.90 -3.86 0.60 N
81 6 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.34 108.30 2.04 0.30 N
82 6 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.95 108.30 2.65 0.30 N
83 6 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.78 108.30 2.48 0.30 N
84 6 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 110.88 108.30 2.58 0.30 N
85 6 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 109.37 119.70 -10.33 1.20 Y
86 6 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 98.92 105.90 -6.98 0.80 N
87 6 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.91 108.30 2.61 0.30 N
88 7 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 117.17 122.90 -5.73 0.60 N
89 7 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.61 122.90 -4.29 0.60 N
90 7 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.76 108.30 4.46 0.30 N
91 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.49 108.30 4.19 0.30 N
92 7 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.24 122.90 -3.66 0.60 N
93 7 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.10 108.30 2.80 0.30 N
94 7 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.84 108.30 2.54 0.30 N
95 7 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.97 108.30 2.67 0.30 N
96 7 "O4'" C DT 15 ? ? "C1'" C DT 15 ? ? N1 C DT 15 ? ? 110.44 108.30 2.14 0.30 N
97 7 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.44 108.30 3.14 0.30 N
98 7 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 109.61 119.70 -10.09 1.20 Y
99 7 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.28 105.90 -6.62 0.80 N
100 7 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.67 108.30 2.37 0.30 N
101 8 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.24 122.90 -3.66 0.60 N
102 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.69 108.30 4.39 0.30 N
103 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.10 108.30 3.80 0.30 N
104 8 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.59 108.30 2.29 0.30 N
105 8 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 111.07 108.30 2.77 0.30 N
106 8 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.59 108.30 3.29 0.30 N
107 8 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 110.82 108.30 2.52 0.30 N
108 8 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 109.08 119.70 -10.62 1.20 Y
109 8 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 99.90 105.90 -6.00 0.80 N
110 9 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.16 122.90 -3.74 0.60 N
111 9 "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 109.89 106.00 3.89 0.60 N
112 9 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.34 122.90 -4.56 0.60 N
113 9 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.60 108.30 4.30 0.30 N
114 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.18 108.30 3.88 0.30 N
115 9 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.86 122.90 -4.04 0.60 N
116 9 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.81 108.30 3.51 0.30 N
117 9 N1 B DA 11 ? ? C6 B DA 11 ? ? N6 B DA 11 ? ? 114.27 118.60 -4.33 0.60 N
118 9 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.16 108.30 1.86 0.30 N
119 9 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 111.21 108.30 2.91 0.30 N
120 9 C6 C DT 15 ? ? C5 C DT 15 ? ? C7 C DT 15 ? ? 119.24 122.90 -3.66 0.60 N
121 9 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.11 108.30 2.81 0.30 N
122 9 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 108.75 119.70 -10.95 1.20 Y
123 9 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 98.90 105.90 -7.00 0.80 N
124 9 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.35 108.30 2.05 0.30 N
125 10 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.01 122.90 -4.89 0.60 N
126 10 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.92 122.90 -4.98 0.60 N
127 10 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.41 108.30 4.11 0.30 N
128 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.17 108.30 3.87 0.30 N
129 10 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.89 122.90 -4.01 0.60 N
130 10 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.43 108.30 3.13 0.30 N
131 10 N1 B DA 11 ? ? C6 B DA 11 ? ? N6 B DA 11 ? ? 114.48 118.60 -4.12 0.60 N
132 10 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.81 108.30 2.51 0.30 N
133 10 C6 C DT 15 ? ? C5 C DT 15 ? ? C7 C DT 15 ? ? 118.80 122.90 -4.10 0.60 N
134 10 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.35 108.30 3.05 0.30 N
135 10 "C3'" C X0K 20 ? ? "O3'" C X0K 20 ? ? P C DG 21 ? ? 108.67 119.70 -11.03 1.20 Y
136 10 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? "C2'" C DG 21 ? ? 98.50 105.90 -7.40 0.80 N
137 10 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.64 108.30 2.34 0.30 N
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DT A 7 ? ? 0.109 'SIDE CHAIN'
2 1 DA B 11 ? ? 0.054 'SIDE CHAIN'
3 1 DT C 15 ? ? 0.075 'SIDE CHAIN'
4 2 DC A 3 ? ? 0.060 'SIDE CHAIN'
5 2 DT A 7 ? ? 0.100 'SIDE CHAIN'
6 2 DG B 9 ? ? 0.113 'SIDE CHAIN'
7 2 DA B 11 ? ? 0.055 'SIDE CHAIN'
8 2 DT C 15 ? ? 0.094 'SIDE CHAIN'
9 2 DG C 16 ? ? 0.056 'SIDE CHAIN'
10 2 DT C 18 ? ? 0.070 'SIDE CHAIN'
11 3 DT A 1 ? ? 0.070 'SIDE CHAIN'
12 3 DC A 3 ? ? 0.076 'SIDE CHAIN'
13 3 DT A 7 ? ? 0.092 'SIDE CHAIN'
14 3 DG B 9 ? ? 0.086 'SIDE CHAIN'
15 3 DT C 15 ? ? 0.082 'SIDE CHAIN'
16 3 DT C 18 ? ? 0.096 'SIDE CHAIN'
17 4 DT A 7 ? ? 0.079 'SIDE CHAIN'
18 4 DG B 9 ? ? 0.089 'SIDE CHAIN'
19 4 DT C 15 ? ? 0.095 'SIDE CHAIN'
20 4 DG C 16 ? ? 0.062 'SIDE CHAIN'
21 4 DT C 18 ? ? 0.094 'SIDE CHAIN'
22 5 DT A 1 ? ? 0.086 'SIDE CHAIN'
23 5 DT A 7 ? ? 0.096 'SIDE CHAIN'
24 5 DG B 9 ? ? 0.101 'SIDE CHAIN'
25 5 DT C 15 ? ? 0.102 'SIDE CHAIN'
26 5 DT C 18 ? ? 0.112 'SIDE CHAIN'
27 6 DT A 7 ? ? 0.097 'SIDE CHAIN'
28 6 DG B 9 ? ? 0.064 'SIDE CHAIN'
29 6 DT C 15 ? ? 0.089 'SIDE CHAIN'
30 6 DT C 18 ? ? 0.105 'SIDE CHAIN'
31 7 DT A 7 ? ? 0.080 'SIDE CHAIN'
32 7 DG B 9 ? ? 0.070 'SIDE CHAIN'
33 7 DT C 15 ? ? 0.073 'SIDE CHAIN'
34 7 DT C 18 ? ? 0.110 'SIDE CHAIN'
35 8 DT A 7 ? ? 0.088 'SIDE CHAIN'
36 8 DG B 9 ? ? 0.061 'SIDE CHAIN'
37 8 DT C 15 ? ? 0.089 'SIDE CHAIN'
38 8 DT C 18 ? ? 0.074 'SIDE CHAIN'
39 8 DG C 21 ? ? 0.060 'SIDE CHAIN'
40 8 DT C 22 ? ? 0.070 'SIDE CHAIN'
41 9 DT A 7 ? ? 0.095 'SIDE CHAIN'
42 9 DG B 9 ? ? 0.071 'SIDE CHAIN'
43 9 DT C 15 ? ? 0.087 'SIDE CHAIN'
44 9 DT C 18 ? ? 0.071 'SIDE CHAIN'
45 10 DT A 1 ? ? 0.064 'SIDE CHAIN'
46 10 DC A 3 ? ? 0.060 'SIDE CHAIN'
47 10 DT A 7 ? ? 0.093 'SIDE CHAIN'
48 10 DG B 9 ? ? 0.063 'SIDE CHAIN'
49 10 DT C 15 ? ? 0.090 'SIDE CHAIN'
50 10 DT C 18 ? ? 0.088 'SIDE CHAIN'
#
_pdbx_entry_details.entry_id 8PWR
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
_pdbx_nmr_ensemble.entry_id 8PWR
_pdbx_nmr_ensemble.conformers_calculated_total_number 15
_pdbx_nmr_ensemble.conformers_submitted_total_number 10
_pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy'
_pdbx_nmr_ensemble.representative_conformer ?
_pdbx_nmr_ensemble.average_constraints_per_residue ?
_pdbx_nmr_ensemble.average_constraint_violations_per_residue ?
_pdbx_nmr_ensemble.maximum_distance_constraint_violation ?
_pdbx_nmr_ensemble.average_distance_constraint_violation ?
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ?
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ?
_pdbx_nmr_ensemble.distance_constraint_violation_method ?
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ?
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ?
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ?
#
_pdbx_nmr_representative.entry_id 8PWR
_pdbx_nmr_representative.conformer_id 2
_pdbx_nmr_representative.selection_criteria 'lowest energy'
#
loop_
_pdbx_nmr_sample_details.solution_id
_pdbx_nmr_sample_details.contents
_pdbx_nmr_sample_details.solvent_system
_pdbx_nmr_sample_details.label
_pdbx_nmr_sample_details.type
_pdbx_nmr_sample_details.details
1 '0.5 mM Triplex-TINA, 90% H2O/10% D2O' '90% H2O/10% D2O' 1H_sample solution ?
2 '0.5 mM Triplex-TINA, 90% H2O/10% D2O' '90% H2O/10% D2O' 1D_sample solution ?
#
loop_
_pdbx_nmr_exptl_sample.solution_id
_pdbx_nmr_exptl_sample.component
_pdbx_nmr_exptl_sample.concentration
_pdbx_nmr_exptl_sample.concentration_range
_pdbx_nmr_exptl_sample.concentration_units
_pdbx_nmr_exptl_sample.isotopic_labeling
1 Triplex-TINA 0.5 ? mM 'natural abundance'
2 Triplex-TINA 0.5 ? mM 'natural abundance'
#
loop_
_pdbx_nmr_exptl_sample_conditions.conditions_id
_pdbx_nmr_exptl_sample_conditions.temperature
_pdbx_nmr_exptl_sample_conditions.pressure_units
_pdbx_nmr_exptl_sample_conditions.pressure
_pdbx_nmr_exptl_sample_conditions.pH
_pdbx_nmr_exptl_sample_conditions.ionic_strength
_pdbx_nmr_exptl_sample_conditions.details
_pdbx_nmr_exptl_sample_conditions.ionic_strength_err
_pdbx_nmr_exptl_sample_conditions.ionic_strength_units
_pdbx_nmr_exptl_sample_conditions.label
_pdbx_nmr_exptl_sample_conditions.pH_err
_pdbx_nmr_exptl_sample_conditions.pH_units
_pdbx_nmr_exptl_sample_conditions.pressure_err
_pdbx_nmr_exptl_sample_conditions.temperature_err
_pdbx_nmr_exptl_sample_conditions.temperature_units
1 279.6 atm 1 7 125 ? ? mM Triplex-TINA_5 ? pH ? ? K
2 300.4 atm 1 7 125 ? ? mM Triplex-TINA_25 ? pH ? ? K
#
loop_
_pdbx_nmr_exptl.experiment_id
_pdbx_nmr_exptl.conditions_id
_pdbx_nmr_exptl.solution_id
_pdbx_nmr_exptl.type
_pdbx_nmr_exptl.spectrometer_id
_pdbx_nmr_exptl.sample_state
1 1 2 '2D 1H-1H NOESY' 1 isotropic
2 1 2 '2D 1H-1H TOCSY' 1 isotropic
3 1 1 '2D 1H-1H NOESY' 1 isotropic
4 2 2 '2D DQF-COSY' 2 isotropic
5 2 2 '2D 1H-1H NOESY' 1 isotropic
6 2 2 '2D 1H-1H TOCSY' 1 isotropic
7 2 1 '2D 1H-1H NOESY' 1 isotropic
#
_pdbx_nmr_refine.entry_id 8PWR
_pdbx_nmr_refine.method 'molecular dynamics'
_pdbx_nmr_refine.details ?
_pdbx_nmr_refine.software_ordinal 2
#
loop_
_pdbx_nmr_software.ordinal
_pdbx_nmr_software.classification
_pdbx_nmr_software.name
_pdbx_nmr_software.version
_pdbx_nmr_software.authors
1 'peak picking' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL'
2 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman'
5 'chemical shift assignment' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL'
4 collection TopSpin ? 'Bruker Biospin'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
X0K C1 C Y N 144
X0K C2 C Y N 145
X0K C3 C Y N 146
X0K C4 C Y N 147
X0K C5 C Y N 148
X0K C6 C Y N 149
X0K C7 C Y N 150
X0K P P N N 151
X0K OP1 O N N 152
X0K OP2 O N N 153
X0K "O5'" O N N 154
X0K "C2'" C N S 155
X0K "C3'" C N N 156
X0K "C4'" C N N 157
X0K C12 C Y N 158
X0K C11 C Y N 159
X0K C14 C Y N 160
X0K C13 C Y N 161
X0K C15 C N N 162
X0K C16 C N N 163
X0K C8 C Y N 164
X0K C8A C Y N 165
X0K C3A C Y N 166
X0K C5A C Y N 167
X0K C10 C Y N 168
X0K C9 C Y N 169
X0K "C1'" C N N 170
X0K "O3'" O N N 171
X0K "O1'" O N N 172
X0K C12A C Y N 173
X0K C14A C Y N 174
X0K C10A C Y N 175
X0K C10C C Y N 176
X0K C10B C Y N 177
X0K H1 H N N 178
X0K H2 H N N 179
X0K H3 H N N 180
X0K H4 H N N 181
X0K H5 H N N 182
X0K H7 H N N 183
X0K H6 H N N 184
X0K H15 H N N 185
X0K "H2'" H N N 186
X0K "H3''" H N N 187
X0K "H3'" H N N 188
X0K "H4'" H N N 189
X0K "H4''" H N N 190
X0K H12 H N N 191
X0K H11 H N N 192
X0K H14 H N N 193
X0K H13 H N N 194
X0K H8 H N N 195
X0K H10 H N N 196
X0K H9 H N N 197
X0K "H1''" H N N 198
X0K "H1'" H N N 199
X0K H16 H N N 200
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
X0K C1 C2 doub Y N 150
X0K C1 C10A sing Y N 151
X0K C2 C3 sing Y N 152
X0K C10 C10A doub Y N 153
X0K C10 C9 sing Y N 154
X0K C10A C10B sing Y N 155
X0K C3 C3A doub Y N 156
X0K C9 C8A doub Y N 157
X0K C10B C3A sing Y N 158
X0K C10B C10C doub Y N 159
X0K C3A C4 sing Y N 160
X0K C8A C10C sing Y N 161
X0K C8A C8 sing Y N 162
X0K C10C C5A sing Y N 163
X0K C4 C5 doub Y N 164
X0K C8 C7 doub Y N 165
X0K C5A C5 sing Y N 166
X0K C5A C6 doub Y N 167
X0K C7 C6 sing Y N 168
X0K C6 C16 sing N N 169
X0K C16 C15 trip N N 170
X0K C15 C14A sing N N 171
X0K C14A C11 doub Y N 172
X0K C14A C14 sing Y N 173
X0K C11 C12 sing Y N 174
X0K C14 C13 doub Y N 175
X0K C12 C12A doub Y N 176
X0K C13 C12A sing Y N 177
X0K C12A "C4'" sing N N 178
X0K "C4'" "O1'" sing N N 179
X0K OP1 P sing N N 180
X0K P OP2 sing N N 181
X0K P "O5'" sing N N 182
X0K "O1'" "C3'" sing N N 183
X0K "C1'" "O5'" sing N N 184
X0K "C1'" "C2'" sing N N 185
X0K "C3'" "C2'" sing N N 186
X0K "C2'" "O3'" sing N N 187
X0K C1 H1 sing N N 188
X0K C2 H2 sing N N 189
X0K C3 H3 sing N N 190
X0K C4 H4 sing N N 191
X0K C5 H5 sing N N 192
X0K C7 H7 sing N N 193
X0K OP1 H6 sing N N 194
X0K OP2 H15 sing N N 195
X0K "C2'" "H2'" sing N N 196
X0K "C3'" "H3''" sing N N 197
X0K "C3'" "H3'" sing N N 198
X0K "C4'" "H4'" sing N N 199
X0K "C4'" "H4''" sing N N 200
X0K C12 H12 sing N N 201
X0K C11 H11 sing N N 202
X0K C14 H14 sing N N 203
X0K C13 H13 sing N N 204
X0K C8 H8 sing N N 205
X0K C10 H10 sing N N 206
X0K C9 H9 sing N N 207
X0K "C1'" "H1''" sing N N 208
X0K "C1'" "H1'" sing N N 209
X0K "O3'" H16 sing N N 210
#
_ndb_struct_conf_na.entry_id 8PWR
_ndb_struct_conf_na.feature 'double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DT 1 1_555 B DA 7 1_555 0.029 -0.192 -0.434 -1.934 6.142 0.006 1 A_DT1:DA14_B A 1 ? B 14 ? 20 1
1 A DC 2 1_555 B DG 6 1_555 0.556 -0.308 -0.366 -4.279 6.889 -1.886 2 A_DC2:DG13_B A 2 ? B 13 ? 19 1
1 A DC 3 1_555 B DG 5 1_555 0.579 -0.341 -0.371 1.923 4.819 -1.487 3 A_DC3:DG12_B A 3 ? B 12 ? 19 1
1 A DT 4 1_555 B DA 4 1_555 0.270 -0.222 0.413 -4.621 -2.075 0.841 4 A_DT4:DA11_B A 4 ? B 11 ? 20 1
1 A DC 5 1_555 B DG 3 1_555 0.713 -0.349 -0.489 10.531 -14.595 1.891 5 A_DC5:DG10_B A 5 ? B 10 ? 19 1
1 A DC 6 1_555 B DG 2 1_555 0.476 -0.290 -0.065 -6.688 -0.589 -1.887 6 A_DC6:DG9_B A 6 ? B 9 ? 19 1
1 A DT 7 1_555 B DA 1 1_555 0.335 -0.188 0.187 -5.806 -3.249 0.884 7 A_DT7:DA8_B A 7 ? B 8 ? 20 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DT 1 1_555 B DA 7 1_555 A DC 2 1_555 B DG 6 1_555 -0.730 -0.982 3.446 -0.114 3.988 33.230 -2.388 1.248 3.312 6.943 0.198
33.462 1 AA_DT1DC2:DG13DA14_BB A 1 ? B 14 ? A 2 ? B 13 ?
1 A DC 2 1_555 B DG 6 1_555 A DC 3 1_555 B DG 5 1_555 -0.417 -0.696 3.235 0.159 5.433 33.901 -2.008 0.731 3.087 9.243 -0.271
34.322 2 AA_DC2DC3:DG12DG13_BB A 2 ? B 13 ? A 3 ? B 12 ?
1 A DC 3 1_555 B DG 5 1_555 A DT 4 1_555 B DA 4 1_555 0.158 -1.756 3.494 -4.325 1.793 28.781 -3.900 -1.303 3.322 3.578 8.629
29.151 3 AA_DC3DT4:DA11DG12_BB A 3 ? B 12 ? A 4 ? B 11 ?
1 A DT 4 1_555 B DA 4 1_555 A DC 5 1_555 B DG 3 1_555 0.176 -0.497 2.784 11.136 0.849 35.587 -0.876 0.994 2.704 1.349 -17.690
37.244 4 AA_DT4DC5:DG10DA11_BB A 4 ? B 11 ? A 5 ? B 10 ?
1 A DC 6 1_555 B DG 2 1_555 A DT 7 1_555 B DA 1 1_555 0.318 -0.897 3.337 -1.387 -0.843 24.688 -1.832 -1.174 3.342 -1.968 3.239
24.741 5 AA_DC6DT7:DA8DG9_BB A 6 ? B 9 ? A 7 ? B 8 ?
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'Spanish Ministry of Economy and Competitiveness' Spain BFU2017-89707-P 1
'Spanish Ministry of Science, Innovation, and Universities' Spain PID2020-116620GB-I00 2
#
_pdbx_entity_instance_feature.ordinal 1
_pdbx_entity_instance_feature.comp_id X0K
_pdbx_entity_instance_feature.asym_id ?
_pdbx_entity_instance_feature.seq_num ?
_pdbx_entity_instance_feature.auth_comp_id X0K
_pdbx_entity_instance_feature.auth_asym_id ?
_pdbx_entity_instance_feature.auth_seq_num ?
_pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION'
_pdbx_entity_instance_feature.details ?
#
loop_
_pdbx_nmr_spectrometer.spectrometer_id
_pdbx_nmr_spectrometer.model
_pdbx_nmr_spectrometer.type
_pdbx_nmr_spectrometer.manufacturer
_pdbx_nmr_spectrometer.field_strength
_pdbx_nmr_spectrometer.details
1 AVANCE ? Bruker 600 ?
2 AVANCE ? Bruker 800 ?
#
_atom_sites.entry_id 8PWR
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
H
N
O
P
#
loop_