HEADER CELL ADHESION 21-JUL-23 8PWW TITLE PFRH5 BOUND TO MONOCLONAL ANTIBODY MAD8-151 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULOCYTE-BINDING PROTEIN HOMOLOG 5; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: PFRH5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SCFV FRAGMENT FOR ANTIBODY MAD8-151; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: RH5, PFD1145C, PF3D7_0424100; SOURCE 5 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS PLASMODIUM FALCIPARUM, MALARIA, MONOCLONAL ANTIBODY, GROWTH- KEYWDS 2 INHIBITION, BLOOD STAGE, ERYTHROCYTE INVASION, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR B.FARRELL,M.K.HIGGINS REVDAT 1 05-JUN-24 8PWW 0 JRNL AUTH B.FARRELL,M.K.HIGGINS JRNL TITL PFRH5 BOUND TO MONOCLONAL ANTIBODY MAD8-151 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (20-OCT-2021) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 105428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 5117 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.89 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2109 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3531 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2024 REMARK 3 BIN R VALUE (WORKING SET) : 0.3526 REMARK 3 BIN FREE R VALUE : 0.3648 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.03 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 85 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8395 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 533 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08590 REMARK 3 B22 (A**2) : -8.20990 REMARK 3 B33 (A**2) : 8.29580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.86060 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.161 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.142 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.162 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.144 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8631 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11642 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3074 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1431 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8631 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1148 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7931 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.35 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.97 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -4.0966 22.7194 -37.6632 REMARK 3 T TENSOR REMARK 3 T11: -0.0728 T22: -0.0431 REMARK 3 T33: -0.0095 T12: 0.0211 REMARK 3 T13: 0.0302 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.7544 L22: 0.2917 REMARK 3 L33: 0.5197 L12: -0.3616 REMARK 3 L13: -0.5414 L23: 0.4129 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.0806 S13: -0.0425 REMARK 3 S21: -0.0245 S22: -0.0703 S23: -0.0215 REMARK 3 S31: -0.0359 S32: -0.0450 S33: 0.0429 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -9.0157 24.8461 2.4945 REMARK 3 T TENSOR REMARK 3 T11: -0.0749 T22: -0.0757 REMARK 3 T33: 0.0132 T12: -0.0048 REMARK 3 T13: 0.0052 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.0264 L22: 0.7093 REMARK 3 L33: 0.2546 L12: 0.5857 REMARK 3 L13: -0.1201 L23: 0.0385 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: -0.0557 S13: -0.0179 REMARK 3 S21: 0.0780 S22: -0.0674 S23: 0.0074 REMARK 3 S31: 0.0416 S32: 0.0594 S33: 0.0097 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -34.0474 -15.1086 -29.6254 REMARK 3 T TENSOR REMARK 3 T11: -0.0841 T22: -0.0011 REMARK 3 T33: -0.0512 T12: -0.0045 REMARK 3 T13: -0.0048 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.7951 L22: 0.4037 REMARK 3 L33: 0.6723 L12: -0.4463 REMARK 3 L13: 0.6310 L23: -0.4889 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: 0.0817 S13: 0.0167 REMARK 3 S21: -0.0274 S22: -0.0370 S23: 0.0301 REMARK 3 S31: 0.0022 S32: 0.0612 S33: 0.0435 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -30.1175 -16.3193 9.6294 REMARK 3 T TENSOR REMARK 3 T11: -0.0737 T22: -0.0822 REMARK 3 T33: -0.0012 T12: 0.0012 REMARK 3 T13: 0.0023 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.1770 L22: 0.8261 REMARK 3 L33: 0.3882 L12: 0.6821 REMARK 3 L13: -0.1953 L23: -0.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: -0.0197 S13: -0.0469 REMARK 3 S21: 0.1207 S22: -0.0449 S23: -0.0140 REMARK 3 S31: -0.0494 S32: -0.0206 S33: -0.0098 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95374 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROCESS REMARK 200 DATA SCALING SOFTWARE : AUTOPROCESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.945 REMARK 200 RESOLUTION RANGE LOW (A) : 79.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M SODIUM REMARK 280 HEPES PH 7 .5, 12% W/V PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.69000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 140 REMARK 465 ASN A 141 REMARK 465 VAL A 142 REMARK 465 ASN A 143 REMARK 465 PHE A 144 REMARK 465 LEU A 145 REMARK 465 GLN A 146 REMARK 465 TYR A 147 REMARK 465 HIS A 148 REMARK 465 PHE A 149 REMARK 465 LYS A 150 REMARK 465 GLU A 151 REMARK 465 LEU A 152 REMARK 465 SER A 153 REMARK 465 ASN A 154 REMARK 465 TYR A 155 REMARK 465 LYS A 455 REMARK 465 PHE A 456 REMARK 465 ASN A 457 REMARK 465 ASP A 458 REMARK 465 VAL A 459 REMARK 465 PRO A 460 REMARK 465 ILE A 461 REMARK 465 LYS A 462 REMARK 465 MET A 463 REMARK 465 GLU A 464 REMARK 465 TYR A 465 REMARK 465 PHE A 466 REMARK 465 GLN A 467 REMARK 465 THR A 468 REMARK 465 TYR A 469 REMARK 465 LYS A 470 REMARK 465 LYS A 471 REMARK 465 ASN A 472 REMARK 465 LYS A 473 REMARK 465 PRO A 474 REMARK 465 LEU A 475 REMARK 465 THR A 476 REMARK 465 GLN A 477 REMARK 465 SER B 119 REMARK 465 GLY B 120 REMARK 465 GLY B 121 REMARK 465 GLY B 122 REMARK 465 GLY B 123 REMARK 465 SER B 124 REMARK 465 GLY B 125 REMARK 465 GLY B 126 REMARK 465 GLY B 127 REMARK 465 GLY B 128 REMARK 465 SER B 129 REMARK 465 GLY B 130 REMARK 465 GLY B 131 REMARK 465 GLY B 132 REMARK 465 GLY B 242 REMARK 465 THR B 243 REMARK 465 LYS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 LYS C 140 REMARK 465 ASN C 141 REMARK 465 VAL C 142 REMARK 465 ASN C 143 REMARK 465 PHE C 144 REMARK 465 LEU C 145 REMARK 465 GLN C 146 REMARK 465 TYR C 147 REMARK 465 HIS C 148 REMARK 465 PHE C 149 REMARK 465 LYS C 150 REMARK 465 GLU C 151 REMARK 465 LEU C 152 REMARK 465 SER C 153 REMARK 465 ASN C 154 REMARK 465 TYR C 155 REMARK 465 TYR C 242 REMARK 465 ASP C 243 REMARK 465 ILE C 244 REMARK 465 ASN C 245 REMARK 465 ASN C 246 REMARK 465 LYS C 247 REMARK 465 ASN C 248 REMARK 465 ARG C 249 REMARK 465 ALA C 250 REMARK 465 PHE C 251 REMARK 465 LYS C 351 REMARK 465 MET C 352 REMARK 465 GLY C 353 REMARK 465 SER C 354 REMARK 465 TYR C 355 REMARK 465 MET C 454 REMARK 465 LYS C 455 REMARK 465 PHE C 456 REMARK 465 ASN C 457 REMARK 465 ASP C 458 REMARK 465 VAL C 459 REMARK 465 PRO C 460 REMARK 465 ILE C 461 REMARK 465 LYS C 462 REMARK 465 MET C 463 REMARK 465 GLU C 464 REMARK 465 TYR C 465 REMARK 465 PHE C 466 REMARK 465 GLN C 467 REMARK 465 THR C 468 REMARK 465 TYR C 469 REMARK 465 LYS C 470 REMARK 465 LYS C 471 REMARK 465 ASN C 472 REMARK 465 LYS C 473 REMARK 465 PRO C 474 REMARK 465 LEU C 475 REMARK 465 THR C 476 REMARK 465 GLN C 477 REMARK 465 SER D 119 REMARK 465 GLY D 120 REMARK 465 GLY D 121 REMARK 465 GLY D 122 REMARK 465 GLY D 123 REMARK 465 SER D 124 REMARK 465 GLY D 125 REMARK 465 GLY D 126 REMARK 465 GLY D 127 REMARK 465 GLY D 128 REMARK 465 SER D 129 REMARK 465 GLY D 130 REMARK 465 GLY D 131 REMARK 465 GLY D 132 REMARK 465 GLY D 133 REMARK 465 SER D 134 REMARK 465 GLY D 242 REMARK 465 THR D 243 REMARK 465 LYS D 244 REMARK 465 HIS D 245 REMARK 465 HIS D 246 REMARK 465 HIS D 247 REMARK 465 HIS D 248 REMARK 465 HIS D 249 REMARK 465 HIS D 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 30 -135.16 51.05 REMARK 500 ASN B 164 -120.14 46.00 REMARK 500 VAL B 185 -55.37 72.94 REMARK 500 SER D 15 -8.15 79.16 REMARK 500 SER D 30 -135.41 50.59 REMARK 500 SER D 84 55.40 38.86 REMARK 500 ASN D 164 -121.05 47.11 REMARK 500 VAL D 185 -56.30 73.02 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PWW A 140 248 UNP Q8IFM5 RH5_PLAF7 140 248 DBREF 8PWW A 249 477 UNP Q8IFM5 RH5_PLAF7 298 526 DBREF 8PWW B 1 250 PDB 8PWW 8PWW 1 250 DBREF 8PWW C 140 248 UNP Q8IFM5 RH5_PLAF7 140 248 DBREF 8PWW C 249 477 UNP Q8IFM5 RH5_PLAF7 298 526 DBREF 8PWW D 1 250 PDB 8PWW 8PWW 1 250 SEQADV 8PWW TYR A 203 UNP Q8IFM5 CYS 203 CONFLICT SEQADV 8PWW ALA A 216 UNP Q8IFM5 THR 216 CONFLICT SEQADV 8PWW ALA A 250 UNP Q8IFM5 THR 299 CONFLICT SEQADV 8PWW TYR C 203 UNP Q8IFM5 CYS 203 CONFLICT SEQADV 8PWW ALA C 216 UNP Q8IFM5 THR 216 CONFLICT SEQADV 8PWW ALA C 250 UNP Q8IFM5 THR 299 CONFLICT SEQRES 1 A 338 LYS ASN VAL ASN PHE LEU GLN TYR HIS PHE LYS GLU LEU SEQRES 2 A 338 SER ASN TYR ASN ILE ALA ASN SER ILE ASP ILE LEU GLN SEQRES 3 A 338 GLU LYS GLU GLY HIS LEU ASP PHE VAL ILE ILE PRO HIS SEQRES 4 A 338 TYR THR PHE LEU ASP TYR TYR LYS HIS LEU SER TYR ASN SEQRES 5 A 338 SER ILE TYR HIS LYS SER SER THR TYR GLY LYS TYR ILE SEQRES 6 A 338 ALA VAL ASP ALA PHE ILE LYS LYS ILE ASN GLU ALA TYR SEQRES 7 A 338 ASP LYS VAL LYS SER LYS CYS ASN ASP ILE LYS ASN ASP SEQRES 8 A 338 LEU ILE ALA THR ILE LYS LYS LEU GLU HIS PRO TYR ASP SEQRES 9 A 338 ILE ASN ASN LYS ASN ARG ALA PHE LYS LYS MET MET ASP SEQRES 10 A 338 GLU TYR ASN THR LYS LYS LYS LYS LEU ILE LYS CYS ILE SEQRES 11 A 338 LYS ASN HIS GLU ASN ASP PHE ASN LYS ILE CYS MET ASP SEQRES 12 A 338 MET LYS ASN TYR GLY THR ASN LEU PHE GLU GLN LEU SER SEQRES 13 A 338 CYS TYR ASN ASN ASN PHE CYS ASN THR ASN GLY ILE ARG SEQRES 14 A 338 TYR HIS TYR ASP GLU TYR ILE HIS LYS LEU ILE LEU SER SEQRES 15 A 338 VAL LYS SER LYS ASN LEU ASN LYS ASP LEU SER ASP MET SEQRES 16 A 338 THR ASN ILE LEU GLN GLN SER GLU LEU LEU LEU THR ASN SEQRES 17 A 338 LEU ASN LYS LYS MET GLY SER TYR ILE TYR ILE ASP THR SEQRES 18 A 338 ILE LYS PHE ILE HIS LYS GLU MET LYS HIS ILE PHE ASN SEQRES 19 A 338 ARG ILE GLU TYR HIS THR LYS ILE ILE ASN ASP LYS THR SEQRES 20 A 338 LYS ILE ILE GLN ASP LYS ILE LYS LEU ASN ILE TRP ARG SEQRES 21 A 338 THR PHE GLN LYS ASP GLU LEU LEU LYS ARG ILE LEU ASP SEQRES 22 A 338 MET SER ASN GLU TYR SER LEU PHE ILE THR SER ASP HIS SEQRES 23 A 338 LEU ARG GLN MET LEU TYR ASN THR PHE TYR SER LYS GLU SEQRES 24 A 338 LYS HIS LEU ASN ASN ILE PHE HIS HIS LEU ILE TYR VAL SEQRES 25 A 338 LEU GLN MET LYS PHE ASN ASP VAL PRO ILE LYS MET GLU SEQRES 26 A 338 TYR PHE GLN THR TYR LYS LYS ASN LYS PRO LEU THR GLN SEQRES 1 B 250 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 B 250 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 B 250 GLY PRO ILE SER SER TYR TYR TRP ASN TRP ILE ARG GLN SEQRES 4 B 250 PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY HIS PHE TYR SEQRES 5 B 250 HIS SER GLY SER THR ASN TYR ASN PRO SER LEU LYS SER SEQRES 6 B 250 ARG VAL THR ILE SER VAL ASP THR SER LYS ASN GLN PHE SEQRES 7 B 250 TYR LEU ASN LEU SER SER VAL THR ALA ALA ASP SER ALA SEQRES 8 B 250 VAL TYR PHE CYS ALA ARG GLN VAL THR MET ILE GLN GLY SEQRES 9 B 250 LEU ILE ASP SER TRP GLY GLN GLY MET LEU VAL THR VAL SEQRES 10 B 250 SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY SEQRES 11 B 250 GLY GLY GLY SER ASP ILE GLN MET THR GLN SER PRO SER SEQRES 12 B 250 SER LEU SER ALA SER VAL GLY ASP ARG VAL THR ILE THR SEQRES 13 B 250 CYS GLN ALA SER GLN ASP ILE ASN ASN SER LEU ASN TRP SEQRES 14 B 250 TYR GLN GLN LYS PRO GLY LYS ALA LEU LYS LEU LEU ILE SEQRES 15 B 250 TYR ASP VAL SER ASN LEU GLU THR GLY VAL PRO SER ARG SEQRES 16 B 250 PHE SER GLY GLU GLY SER GLY THR ASP PHE SER LEU ILE SEQRES 17 B 250 ILE SER SER LEU GLN PRO GLU ASP ILE ALA THR TYR TYR SEQRES 18 B 250 CYS GLN GLN TYR GLU ALA LEU PRO LEU THR PHE GLY GLY SEQRES 19 B 250 GLY THR LYS VAL GLU ILE LYS GLY THR LYS HIS HIS HIS SEQRES 20 B 250 HIS HIS HIS SEQRES 1 C 338 LYS ASN VAL ASN PHE LEU GLN TYR HIS PHE LYS GLU LEU SEQRES 2 C 338 SER ASN TYR ASN ILE ALA ASN SER ILE ASP ILE LEU GLN SEQRES 3 C 338 GLU LYS GLU GLY HIS LEU ASP PHE VAL ILE ILE PRO HIS SEQRES 4 C 338 TYR THR PHE LEU ASP TYR TYR LYS HIS LEU SER TYR ASN SEQRES 5 C 338 SER ILE TYR HIS LYS SER SER THR TYR GLY LYS TYR ILE SEQRES 6 C 338 ALA VAL ASP ALA PHE ILE LYS LYS ILE ASN GLU ALA TYR SEQRES 7 C 338 ASP LYS VAL LYS SER LYS CYS ASN ASP ILE LYS ASN ASP SEQRES 8 C 338 LEU ILE ALA THR ILE LYS LYS LEU GLU HIS PRO TYR ASP SEQRES 9 C 338 ILE ASN ASN LYS ASN ARG ALA PHE LYS LYS MET MET ASP SEQRES 10 C 338 GLU TYR ASN THR LYS LYS LYS LYS LEU ILE LYS CYS ILE SEQRES 11 C 338 LYS ASN HIS GLU ASN ASP PHE ASN LYS ILE CYS MET ASP SEQRES 12 C 338 MET LYS ASN TYR GLY THR ASN LEU PHE GLU GLN LEU SER SEQRES 13 C 338 CYS TYR ASN ASN ASN PHE CYS ASN THR ASN GLY ILE ARG SEQRES 14 C 338 TYR HIS TYR ASP GLU TYR ILE HIS LYS LEU ILE LEU SER SEQRES 15 C 338 VAL LYS SER LYS ASN LEU ASN LYS ASP LEU SER ASP MET SEQRES 16 C 338 THR ASN ILE LEU GLN GLN SER GLU LEU LEU LEU THR ASN SEQRES 17 C 338 LEU ASN LYS LYS MET GLY SER TYR ILE TYR ILE ASP THR SEQRES 18 C 338 ILE LYS PHE ILE HIS LYS GLU MET LYS HIS ILE PHE ASN SEQRES 19 C 338 ARG ILE GLU TYR HIS THR LYS ILE ILE ASN ASP LYS THR SEQRES 20 C 338 LYS ILE ILE GLN ASP LYS ILE LYS LEU ASN ILE TRP ARG SEQRES 21 C 338 THR PHE GLN LYS ASP GLU LEU LEU LYS ARG ILE LEU ASP SEQRES 22 C 338 MET SER ASN GLU TYR SER LEU PHE ILE THR SER ASP HIS SEQRES 23 C 338 LEU ARG GLN MET LEU TYR ASN THR PHE TYR SER LYS GLU SEQRES 24 C 338 LYS HIS LEU ASN ASN ILE PHE HIS HIS LEU ILE TYR VAL SEQRES 25 C 338 LEU GLN MET LYS PHE ASN ASP VAL PRO ILE LYS MET GLU SEQRES 26 C 338 TYR PHE GLN THR TYR LYS LYS ASN LYS PRO LEU THR GLN SEQRES 1 D 250 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 D 250 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 D 250 GLY PRO ILE SER SER TYR TYR TRP ASN TRP ILE ARG GLN SEQRES 4 D 250 PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY HIS PHE TYR SEQRES 5 D 250 HIS SER GLY SER THR ASN TYR ASN PRO SER LEU LYS SER SEQRES 6 D 250 ARG VAL THR ILE SER VAL ASP THR SER LYS ASN GLN PHE SEQRES 7 D 250 TYR LEU ASN LEU SER SER VAL THR ALA ALA ASP SER ALA SEQRES 8 D 250 VAL TYR PHE CYS ALA ARG GLN VAL THR MET ILE GLN GLY SEQRES 9 D 250 LEU ILE ASP SER TRP GLY GLN GLY MET LEU VAL THR VAL SEQRES 10 D 250 SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY SEQRES 11 D 250 GLY GLY GLY SER ASP ILE GLN MET THR GLN SER PRO SER SEQRES 12 D 250 SER LEU SER ALA SER VAL GLY ASP ARG VAL THR ILE THR SEQRES 13 D 250 CYS GLN ALA SER GLN ASP ILE ASN ASN SER LEU ASN TRP SEQRES 14 D 250 TYR GLN GLN LYS PRO GLY LYS ALA LEU LYS LEU LEU ILE SEQRES 15 D 250 TYR ASP VAL SER ASN LEU GLU THR GLY VAL PRO SER ARG SEQRES 16 D 250 PHE SER GLY GLU GLY SER GLY THR ASP PHE SER LEU ILE SEQRES 17 D 250 ILE SER SER LEU GLN PRO GLU ASP ILE ALA THR TYR TYR SEQRES 18 D 250 CYS GLN GLN TYR GLU ALA LEU PRO LEU THR PHE GLY GLY SEQRES 19 D 250 GLY THR LYS VAL GLU ILE LYS GLY THR LYS HIS HIS HIS SEQRES 20 D 250 HIS HIS HIS HET EDO A 501 4 HET GOL A 502 6 HET PEG A 503 7 HET GOL B 301 6 HET PEG C 501 7 HET EDO C 502 4 HET GOL D 301 6 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 7 PEG 2(C4 H10 O3) FORMUL 12 HOH *533(H2 O) HELIX 1 AA1 ASN A 156 ASN A 159 5 4 HELIX 2 AA2 ILE A 176 HIS A 195 1 20 HELIX 3 AA3 LYS A 196 GLY A 201 5 6 HELIX 4 AA4 LYS A 202 SER A 222 1 21 HELIX 5 AA5 CYS A 224 HIS A 240 1 17 HELIX 6 AA6 ALA A 250 HIS A 272 1 23 HELIX 7 AA7 HIS A 272 GLN A 293 1 22 HELIX 8 AA8 THR A 304 ILE A 315 1 12 HELIX 9 AA9 ILE A 315 LYS A 325 1 11 HELIX 10 AB1 ASN A 326 MET A 352 1 27 HELIX 11 AB2 TYR A 355 ASN A 396 1 42 HELIX 12 AB3 GLN A 402 VAL A 451 1 50 HELIX 13 AB4 LEU B 63 SER B 65 5 3 HELIX 14 AB5 THR B 86 SER B 90 5 5 HELIX 15 AB6 GLN B 213 ILE B 217 5 5 HELIX 16 AB7 ASN C 156 ASN C 159 5 4 HELIX 17 AB8 ILE C 176 HIS C 195 1 20 HELIX 18 AB9 LYS C 196 GLY C 201 5 6 HELIX 19 AC1 LYS C 202 SER C 222 1 21 HELIX 20 AC2 CYS C 224 GLU C 239 1 16 HELIX 21 AC3 LYS C 253 HIS C 272 1 20 HELIX 22 AC4 HIS C 272 GLN C 293 1 22 HELIX 23 AC5 THR C 304 ILE C 315 1 12 HELIX 24 AC6 ILE C 315 LYS C 325 1 11 HELIX 25 AC7 ASN C 326 LYS C 350 1 25 HELIX 26 AC8 TYR C 357 ASN C 396 1 40 HELIX 27 AC9 GLN C 402 VAL C 451 1 50 HELIX 28 AD1 LEU D 63 SER D 65 5 3 HELIX 29 AD2 THR D 86 SER D 90 5 5 HELIX 30 AD3 GLN D 213 ILE D 217 5 5 SHEET 1 AA1 2 ILE A 161 LEU A 164 0 SHEET 2 AA1 2 ASP A 172 ILE A 175 -1 O ASP A 172 N LEU A 164 SHEET 1 AA2 2 CYS A 302 ASN A 303 0 SHEET 2 AA2 2 THR A 400 PHE A 401 -1 O PHE A 401 N CYS A 302 SHEET 1 AA3 4 GLN B 3 SER B 7 0 SHEET 2 AA3 4 LEU B 18 SER B 25 -1 O THR B 21 N SER B 7 SHEET 3 AA3 4 GLN B 77 LEU B 82 -1 O LEU B 82 N LEU B 18 SHEET 4 AA3 4 VAL B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 AA4 6 LEU B 11 VAL B 12 0 SHEET 2 AA4 6 MET B 113 VAL B 117 1 O THR B 116 N VAL B 12 SHEET 3 AA4 6 ALA B 91 GLN B 98 -1 N TYR B 93 O MET B 113 SHEET 4 AA4 6 TYR B 33 GLN B 39 -1 N ILE B 37 O PHE B 94 SHEET 5 AA4 6 GLU B 46 TYR B 52 -1 O PHE B 51 N TRP B 34 SHEET 6 AA4 6 SER B 56 TYR B 59 -1 O SER B 56 N TYR B 52 SHEET 1 AA5 4 LEU B 11 VAL B 12 0 SHEET 2 AA5 4 MET B 113 VAL B 117 1 O THR B 116 N VAL B 12 SHEET 3 AA5 4 ALA B 91 GLN B 98 -1 N TYR B 93 O MET B 113 SHEET 4 AA5 4 ILE B 106 TRP B 109 -1 O SER B 108 N ARG B 97 SHEET 1 AA6 4 MET B 138 SER B 141 0 SHEET 2 AA6 4 VAL B 153 ALA B 159 -1 O GLN B 158 N THR B 139 SHEET 3 AA6 4 ASP B 204 ILE B 209 -1 O LEU B 207 N ILE B 155 SHEET 4 AA6 4 PHE B 196 SER B 201 -1 N SER B 197 O ILE B 208 SHEET 1 AA7 6 SER B 144 ALA B 147 0 SHEET 2 AA7 6 THR B 236 ILE B 240 1 O LYS B 237 N LEU B 145 SHEET 3 AA7 6 ALA B 218 GLN B 224 -1 N ALA B 218 O VAL B 238 SHEET 4 AA7 6 LEU B 167 GLN B 172 -1 N ASN B 168 O GLN B 223 SHEET 5 AA7 6 LYS B 179 TYR B 183 -1 O ILE B 182 N TRP B 169 SHEET 6 AA7 6 ASN B 187 LEU B 188 -1 O ASN B 187 N TYR B 183 SHEET 1 AA8 4 SER B 144 ALA B 147 0 SHEET 2 AA8 4 THR B 236 ILE B 240 1 O LYS B 237 N LEU B 145 SHEET 3 AA8 4 ALA B 218 GLN B 224 -1 N ALA B 218 O VAL B 238 SHEET 4 AA8 4 THR B 231 PHE B 232 -1 O THR B 231 N GLN B 224 SHEET 1 AA9 2 ILE C 161 LEU C 164 0 SHEET 2 AA9 2 ASP C 172 ILE C 175 -1 O ASP C 172 N LEU C 164 SHEET 1 AB1 2 CYS C 302 ASN C 303 0 SHEET 2 AB1 2 THR C 400 PHE C 401 -1 O PHE C 401 N CYS C 302 SHEET 1 AB2 4 GLN D 3 SER D 7 0 SHEET 2 AB2 4 LEU D 18 SER D 25 -1 O THR D 21 N SER D 7 SHEET 3 AB2 4 GLN D 77 LEU D 82 -1 O LEU D 82 N LEU D 18 SHEET 4 AB2 4 VAL D 67 ASP D 72 -1 N SER D 70 O TYR D 79 SHEET 1 AB3 6 LEU D 11 VAL D 12 0 SHEET 2 AB3 6 MET D 113 VAL D 117 1 O THR D 116 N VAL D 12 SHEET 3 AB3 6 ALA D 91 GLN D 98 -1 N TYR D 93 O MET D 113 SHEET 4 AB3 6 TYR D 33 GLN D 39 -1 N ILE D 37 O PHE D 94 SHEET 5 AB3 6 GLU D 46 TYR D 52 -1 O PHE D 51 N TRP D 34 SHEET 6 AB3 6 SER D 56 TYR D 59 -1 O SER D 56 N TYR D 52 SHEET 1 AB4 4 LEU D 11 VAL D 12 0 SHEET 2 AB4 4 MET D 113 VAL D 117 1 O THR D 116 N VAL D 12 SHEET 3 AB4 4 ALA D 91 GLN D 98 -1 N TYR D 93 O MET D 113 SHEET 4 AB4 4 ILE D 106 TRP D 109 -1 O SER D 108 N ARG D 97 SHEET 1 AB5 4 MET D 138 SER D 141 0 SHEET 2 AB5 4 VAL D 153 ALA D 159 -1 O GLN D 158 N THR D 139 SHEET 3 AB5 4 ASP D 204 ILE D 209 -1 O LEU D 207 N ILE D 155 SHEET 4 AB5 4 PHE D 196 SER D 201 -1 N SER D 197 O ILE D 208 SHEET 1 AB6 6 SER D 144 ALA D 147 0 SHEET 2 AB6 6 THR D 236 ILE D 240 1 O LYS D 237 N LEU D 145 SHEET 3 AB6 6 ALA D 218 GLN D 224 -1 N ALA D 218 O VAL D 238 SHEET 4 AB6 6 LEU D 167 GLN D 172 -1 N ASN D 168 O GLN D 223 SHEET 5 AB6 6 LYS D 179 TYR D 183 -1 O ILE D 182 N TRP D 169 SHEET 6 AB6 6 ASN D 187 LEU D 188 -1 O ASN D 187 N TYR D 183 SHEET 1 AB7 4 SER D 144 ALA D 147 0 SHEET 2 AB7 4 THR D 236 ILE D 240 1 O LYS D 237 N LEU D 145 SHEET 3 AB7 4 ALA D 218 GLN D 224 -1 N ALA D 218 O VAL D 238 SHEET 4 AB7 4 THR D 231 PHE D 232 -1 O THR D 231 N GLN D 224 SSBOND 1 CYS A 224 CYS A 268 1555 1555 2.06 SSBOND 2 CYS A 296 CYS A 302 1555 1555 2.05 SSBOND 3 CYS B 22 CYS B 95 1555 1555 2.07 SSBOND 4 CYS B 157 CYS B 222 1555 1555 2.05 SSBOND 5 CYS C 224 CYS C 268 1555 1555 2.05 SSBOND 6 CYS C 296 CYS C 302 1555 1555 2.04 SSBOND 7 CYS D 22 CYS D 95 1555 1555 2.07 SSBOND 8 CYS D 157 CYS D 222 1555 1555 2.07 CISPEP 1 SER B 141 PRO B 142 0 -2.56 CISPEP 2 LEU B 228 PRO B 229 0 0.92 CISPEP 3 SER D 141 PRO D 142 0 -3.50 CISPEP 4 LEU D 228 PRO D 229 0 0.66 CRYST1 78.303 121.380 78.998 90.00 90.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012771 0.000000 0.000040 0.00000 SCALE2 0.000000 0.008239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012659 0.00000