HEADER VIRUS LIKE PARTICLE 22-JUL-23 8PX6 TITLE HEPATITIS B CORE PROTEIN WITH BOUND SLLGRM-DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTERNAL CORE ANTIGEN; COMPND 3 CHAIN: B, A, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SLLGRM-DIMER; COMPND 7 CHAIN: M, E; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THIS IS A SYNTHETIC PEPTIDE WITH TWO MOIETIES OF COMPND 10 SLLGRM THAT ARE LINKED BY A PEG LINKER THE DENSITY THAT IS ASSIGNED COMPND 11 TO SLLGRM IS MODELLED AS POLY-ALA. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS B VIRUS; SOURCE 3 ORGANISM_TAXID: 10407; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630 KEYWDS HEPATITIS B CORE PROTEIN, SPIKES SLLGRM-DIMER AGGREGATOR HEPATITIS B KEYWDS 2 VIRUS CAPSID LIKE PARTICLE, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR C.MAKBUL,V.KHAYENKO,M.H.MARIC,B.BOTTCHER REVDAT 1 31-JUL-24 8PX6 0 JRNL AUTH V.KHAYENKO,C.MAKBUL,C.SCHULTE,N.HEMMELMANN,B.BOTTCHER, JRNL AUTH 2 H.M.MARIC JRNL TITL PEPTIDE DIMERS AGGREGATE HEPATITIS B CORE PROTEINS IN LIVE JRNL TITL 2 CELLS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, UCSF CHIMERA, REMARK 3 PHENIX, COOT, PHENIX, COOT, RELION, REMARK 3 CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 7OD4 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.500 REMARK 3 NUMBER OF PARTICLES : 132610 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8PX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132130. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HEPATITIS B VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 4.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4956 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 360-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 360-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.16_B42360. REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D, M, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 466.86000 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 466.86000 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 466.86000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 466.86000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 466.86000 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 233.43000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 611.12767 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 89.16233 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 233.43000 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 611.12767 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 377.69767 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 611.12767 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 377.69767 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 233.43000 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 377.69767 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 233.43000 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 611.12767 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 611.12767 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 377.69767 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 233.43000 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 233.43000 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 611.12767 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 89.16233 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 377.69767 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 233.43000 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 -144.26767 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 466.86000 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 466.86000 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 611.12767 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 89.16233 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 233.43000 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 466.86000 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 466.86000 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 466.86000 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 611.12767 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 89.16233 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 233.43000 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 377.69767 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 233.43000 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 -144.26767 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 233.43000 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 -144.26767 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 89.16233 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 466.86000 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 466.86000 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 466.86000 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 611.12767 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 377.69767 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 233.43000 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 466.86000 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 466.86000 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 233.43000 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 -144.26767 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 89.16233 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 466.86000 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 233.43000 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 -144.26767 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 377.69767 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 377.69767 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 233.43000 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 611.12767 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 611.12767 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 89.16233 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 233.43000 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 377.69767 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 233.43000 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 611.12767 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 466.86000 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 466.86000 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 466.86000 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 89.16233 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 233.43000 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 611.12767 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 466.86000 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 466.86000 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 466.86000 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 466.86000 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 466.86000 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 466.86000 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 466.86000 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 466.86000 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 233.43000 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 611.12767 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 377.69767 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 233.43000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 611.12767 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 89.16233 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 -144.26767 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 377.69767 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 233.43000 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 89.16233 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 233.43000 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -144.26767 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 -144.26767 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 377.69767 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 233.43000 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 233.43000 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 611.12767 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 377.69767 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 89.16233 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 233.43000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 611.12767 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 466.86000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 466.86000 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 -144.26767 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 89.16233 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 233.43000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 466.86000 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 -144.26767 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 89.16233 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 233.43000 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 89.16233 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 233.43000 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 611.12767 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 233.43000 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -144.26767 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 377.69767 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 466.86000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 -144.26767 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 377.69767 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 233.43000 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 233.43000 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 -144.26767 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 377.69767 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 466.86000 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 233.43000 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 -144.26767 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 89.16233 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 89.16233 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 233.43000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 -144.26767 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 -144.26767 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 89.16233 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 233.43000 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 89.16233 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 233.43000 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 -144.26767 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 466.86000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 466.86000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 466.86000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 377.69767 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 233.43000 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 -144.26767 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 466.86000 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 144 REMARK 465 GLU B 145 REMARK 465 THR B 146 REMARK 465 THR B 147 REMARK 465 VAL B 148 REMARK 465 VAL B 149 REMARK 465 ARG B 150 REMARK 465 ARG B 151 REMARK 465 ARG B 152 REMARK 465 GLY B 153 REMARK 465 ARG B 154 REMARK 465 SER B 155 REMARK 465 PRO B 156 REMARK 465 ARG B 157 REMARK 465 ARG B 158 REMARK 465 ARG B 159 REMARK 465 THR B 160 REMARK 465 PRO B 161 REMARK 465 SER B 162 REMARK 465 PRO B 163 REMARK 465 ARG B 164 REMARK 465 ARG B 165 REMARK 465 ARG B 166 REMARK 465 ARG B 167 REMARK 465 SER B 168 REMARK 465 GLN B 169 REMARK 465 SER B 170 REMARK 465 PRO B 171 REMARK 465 ARG B 172 REMARK 465 ARG B 173 REMARK 465 ARG B 174 REMARK 465 ARG B 175 REMARK 465 SER B 176 REMARK 465 GLN B 177 REMARK 465 SER B 178 REMARK 465 ARG B 179 REMARK 465 GLU B 180 REMARK 465 SER B 181 REMARK 465 GLN B 182 REMARK 465 CYS B 183 REMARK 465 PRO A 144 REMARK 465 GLU A 145 REMARK 465 THR A 146 REMARK 465 THR A 147 REMARK 465 VAL A 148 REMARK 465 VAL A 149 REMARK 465 ARG A 150 REMARK 465 ARG A 151 REMARK 465 ARG A 152 REMARK 465 GLY A 153 REMARK 465 ARG A 154 REMARK 465 SER A 155 REMARK 465 PRO A 156 REMARK 465 ARG A 157 REMARK 465 ARG A 158 REMARK 465 ARG A 159 REMARK 465 THR A 160 REMARK 465 PRO A 161 REMARK 465 SER A 162 REMARK 465 PRO A 163 REMARK 465 ARG A 164 REMARK 465 ARG A 165 REMARK 465 ARG A 166 REMARK 465 ARG A 167 REMARK 465 SER A 168 REMARK 465 GLN A 169 REMARK 465 SER A 170 REMARK 465 PRO A 171 REMARK 465 ARG A 172 REMARK 465 ARG A 173 REMARK 465 ARG A 174 REMARK 465 ARG A 175 REMARK 465 SER A 176 REMARK 465 GLN A 177 REMARK 465 SER A 178 REMARK 465 ARG A 179 REMARK 465 GLU A 180 REMARK 465 SER A 181 REMARK 465 GLN A 182 REMARK 465 CYS A 183 REMARK 465 PRO C 144 REMARK 465 GLU C 145 REMARK 465 THR C 146 REMARK 465 THR C 147 REMARK 465 VAL C 148 REMARK 465 VAL C 149 REMARK 465 ARG C 150 REMARK 465 ARG C 151 REMARK 465 ARG C 152 REMARK 465 GLY C 153 REMARK 465 ARG C 154 REMARK 465 SER C 155 REMARK 465 PRO C 156 REMARK 465 ARG C 157 REMARK 465 ARG C 158 REMARK 465 ARG C 159 REMARK 465 THR C 160 REMARK 465 PRO C 161 REMARK 465 SER C 162 REMARK 465 PRO C 163 REMARK 465 ARG C 164 REMARK 465 ARG C 165 REMARK 465 ARG C 166 REMARK 465 ARG C 167 REMARK 465 SER C 168 REMARK 465 GLN C 169 REMARK 465 SER C 170 REMARK 465 PRO C 171 REMARK 465 ARG C 172 REMARK 465 ARG C 173 REMARK 465 ARG C 174 REMARK 465 ARG C 175 REMARK 465 SER C 176 REMARK 465 GLN C 177 REMARK 465 SER C 178 REMARK 465 ARG C 179 REMARK 465 GLU C 180 REMARK 465 SER C 181 REMARK 465 GLN C 182 REMARK 465 CYS C 183 REMARK 465 PRO D 144 REMARK 465 GLU D 145 REMARK 465 THR D 146 REMARK 465 THR D 147 REMARK 465 VAL D 148 REMARK 465 VAL D 149 REMARK 465 ARG D 150 REMARK 465 ARG D 151 REMARK 465 ARG D 152 REMARK 465 GLY D 153 REMARK 465 ARG D 154 REMARK 465 SER D 155 REMARK 465 PRO D 156 REMARK 465 ARG D 157 REMARK 465 ARG D 158 REMARK 465 ARG D 159 REMARK 465 THR D 160 REMARK 465 PRO D 161 REMARK 465 SER D 162 REMARK 465 PRO D 163 REMARK 465 ARG D 164 REMARK 465 ARG D 165 REMARK 465 ARG D 166 REMARK 465 ARG D 167 REMARK 465 SER D 168 REMARK 465 GLN D 169 REMARK 465 SER D 170 REMARK 465 PRO D 171 REMARK 465 ARG D 172 REMARK 465 ARG D 173 REMARK 465 ARG D 174 REMARK 465 ARG D 175 REMARK 465 SER D 176 REMARK 465 GLN D 177 REMARK 465 SER D 178 REMARK 465 ARG D 179 REMARK 465 GLU D 180 REMARK 465 SER D 181 REMARK 465 GLN D 182 REMARK 465 CYS D 183 REMARK 465 MET M 410 REMARK 465 MET E 410 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS B 61 SG REMARK 470 CYS A 61 SG REMARK 470 CYS C 61 SG REMARK 470 CYS D 61 SG REMARK 470 SER M 405 OG REMARK 470 LEU M 406 CG CD1 CD2 REMARK 470 LEU M 407 CG CD1 CD2 REMARK 470 ARG M 409 CG CD NE CZ NH1 NH2 REMARK 470 SER E 405 OG REMARK 470 LEU E 406 CG CD1 CD2 REMARK 470 LEU E 407 CG CD1 CD2 REMARK 470 ARG E 409 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 38 24.38 -142.87 REMARK 500 PRO A 45 53.07 -90.94 REMARK 500 ASN A 92 -63.78 -92.48 REMARK 500 TYR C 38 24.59 -140.50 REMARK 500 PRO C 45 58.05 -91.28 REMARK 500 ASN C 92 -61.31 -101.26 REMARK 500 TYR D 38 26.97 -141.00 REMARK 500 PRO D 45 48.05 -89.38 REMARK 500 LEU M 407 141.44 -171.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-17996 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-18000 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-18001 RELATED DB: EMDB REMARK 900 HEPATITIS B CORE PROTEIN WITH BOUND SLLGRM-DIMER DBREF 8PX6 B 1 183 UNP W6CP35 W6CP35_HBV 17 199 DBREF 8PX6 A 1 183 UNP W6CP35 W6CP35_HBV 17 199 DBREF 8PX6 C 1 183 UNP W6CP35 W6CP35_HBV 17 199 DBREF 8PX6 D 1 183 UNP W6CP35 W6CP35_HBV 17 199 DBREF 8PX6 M 405 410 PDB 8PX6 8PX6 405 410 DBREF 8PX6 E 405 410 PDB 8PX6 8PX6 405 410 SEQRES 1 B 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 B 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 B 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 B 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 B 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 B 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 B 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 B 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 B 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 B 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 B 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 B 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 B 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 B 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 B 183 CYS SEQRES 1 A 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 A 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 A 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 A 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 A 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 A 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 A 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 A 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 A 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 A 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 A 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 A 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 A 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 A 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 A 183 CYS SEQRES 1 C 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 C 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 C 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 C 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 C 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 C 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 C 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 C 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 C 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 C 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 C 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 C 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 C 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 C 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 C 183 CYS SEQRES 1 D 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 D 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 D 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 D 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 D 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 D 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 D 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 D 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 D 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 D 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 D 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 D 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 D 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 D 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 D 183 CYS SEQRES 1 M 6 SER LEU LEU GLY ARG MET SEQRES 1 E 6 SER LEU LEU GLY ARG MET HELIX 1 AA1 PRO B 20 PHE B 24 5 5 HELIX 2 AA2 SER B 26 GLU B 43 1 18 HELIX 3 AA3 SER B 49 LEU B 76 1 28 HELIX 4 AA4 ASP B 78 GLY B 111 1 34 HELIX 5 AA5 GLY B 111 THR B 128 1 18 HELIX 6 AA6 PRO B 129 ARG B 133 5 5 HELIX 7 AA7 PRO A 20 PHE A 24 5 5 HELIX 8 AA8 SER A 26 GLU A 43 1 18 HELIX 9 AA9 SER A 49 LEU A 76 1 28 HELIX 10 AB1 ASP A 78 GLY A 111 1 34 HELIX 11 AB2 GLY A 111 THR A 128 1 18 HELIX 12 AB3 PRO A 129 ARG A 133 5 5 HELIX 13 AB4 THR C 12 SER C 17 1 6 HELIX 14 AB5 PHE C 18 LEU C 19 5 2 HELIX 15 AB6 PRO C 20 PHE C 24 5 5 HELIX 16 AB7 SER C 26 GLU C 43 1 18 HELIX 17 AB8 SER C 49 LEU C 76 1 28 HELIX 18 AB9 ASP C 78 GLY C 111 1 34 HELIX 19 AC1 GLY C 111 THR C 128 1 18 HELIX 20 AC2 PRO C 129 ARG C 133 5 5 HELIX 21 AC3 GLU D 14 PHE D 18 5 5 HELIX 22 AC4 PRO D 20 PHE D 24 5 5 HELIX 23 AC5 SER D 26 GLU D 43 1 18 HELIX 24 AC6 SER D 49 LEU D 76 1 28 HELIX 25 AC7 SER D 81 PHE D 110 1 30 HELIX 26 AC8 GLY D 111 THR D 128 1 18 HELIX 27 AC9 PRO D 129 ARG D 133 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000