HEADER CELL ADHESION 23-JUL-23 8PXC TITLE STRUCTURE OF FAP1, A DOMAIN OF THE ACCESSORY SEC-DEPENDENT SERINE-RICH TITLE 2 GLYCOPROTEIN ADHESIN FROM STREPTOCOCCUS ORALIS, SOLVED AT WAVELENGTH TITLE 3 3.06 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS ORALIS; SOURCE 3 ORGANISM_TAXID: 1303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SEC-DEPENDENT SERINE-RICH GLYCOPROTEIN ADHESIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.EL OMARI,R.DUMAN,V.MYKHAYLYK,C.ORR,C.D.OWEN,M.A.WALSH,A.WAGNER REVDAT 1 25-OCT-23 8PXC 0 JRNL AUTH K.EL OMARI,R.DUMAN,V.MYKHAYLYK,C.M.ORR,M.LATIMER-SMITH, JRNL AUTH 2 G.WINTER,V.GRAMA,F.QU,K.BOUNTRA,H.S.KWONG,M.ROMANO,R.I.REIS, JRNL AUTH 3 L.VOGELEY,L.VECCHIA,C.D.OWEN,S.WITTMANN,M.RENNER,M.SENDA, JRNL AUTH 4 N.MATSUGAKI,Y.KAWANO,T.A.BOWDEN,I.MORAES,J.M.GRIMES, JRNL AUTH 5 E.J.MANCINI,M.A.WALSH,C.R.GUZZO,R.J.OWENS,E.Y.JONES, JRNL AUTH 6 D.G.BROWN,D.I.STUART,K.BEIS,A.WAGNER JRNL TITL EXPERIMENTAL PHASING OPPORTUNITIES FOR MACROMOLECULAR JRNL TITL 2 CRYSTALLOGRAPHY AT VERY LONG WAVELENGTHS. JRNL REF COMMUN CHEM V. 6 219 2023 JRNL REFN ESSN 2399-3669 JRNL PMID 37828292 JRNL DOI 10.1038/S42004-023-01014-0 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 16726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 900 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 884 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : -1.36000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.204 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.059 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2000 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1830 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2718 ; 1.499 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4223 ; 0.486 ; 1.561 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 6.855 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 8 ; 6.229 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;12.144 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 323 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2351 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 449 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1026 ; 0.933 ; 0.789 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1026 ; 0.933 ; 0.789 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1282 ; 1.582 ; 1.404 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1283 ; 1.582 ; 1.408 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 974 ; 1.564 ; 0.969 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 975 ; 1.564 ; 0.970 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1434 ; 2.490 ; 1.692 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8901 ;10.819 ;11.430 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8677 ;10.813 ;10.590 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 506 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3998 -6.1218 26.9192 REMARK 3 T TENSOR REMARK 3 T11: 0.0032 T22: 0.0790 REMARK 3 T33: 0.0778 T12: -0.0064 REMARK 3 T13: -0.0125 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.2380 L22: 0.3882 REMARK 3 L33: 1.3442 L12: -0.1566 REMARK 3 L13: -0.3142 L23: 0.3561 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0352 S13: 0.0209 REMARK 3 S21: 0.0182 S22: 0.0331 S23: -0.0317 REMARK 3 S31: 0.0062 S32: 0.0546 S33: -0.0318 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8PXC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I23 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 3.066 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17626 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.973 REMARK 200 RESOLUTION RANGE LOW (A) : 65.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.3 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.11220 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS 5.5 25 % W/V PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.40500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.40500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 VAL A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 5 REMARK 465 GLU A 6 REMARK 465 ASP A 7 REMARK 465 VAL A 8 REMARK 465 THR A 9 REMARK 465 ALA A 10 REMARK 465 GLU A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 LEU A 14 REMARK 465 THR A 15 REMARK 465 MET A 16 REMARK 465 THR A 17 REMARK 465 SER A 18 REMARK 465 VAL A 19 REMARK 465 ALA A 20 REMARK 465 LEU A 21 REMARK 465 THR A 22 REMARK 465 GLU A 23 REMARK 465 LYS A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 GLU A 27 REMARK 465 GLU A 28 REMARK 465 LYS A 29 REMARK 465 ARG A 30 REMARK 465 LYS A 31 REMARK 465 LYS A 32 REMARK 465 LEU A 33 REMARK 465 ASP A 34 REMARK 465 ALA A 35 REMARK 465 LEU A 36 REMARK 465 SER A 37 REMARK 465 ALA A 38 REMARK 465 GLU A 39 REMARK 465 ILE A 40 REMARK 465 GLY A 41 REMARK 465 GLN A 42 REMARK 465 PHE A 43 REMARK 465 LEU A 44 REMARK 465 ALA A 45 REMARK 465 GLN A 46 REMARK 465 ALA A 47 REMARK 465 GLN A 48 REMARK 465 GLY A 49 REMARK 465 LEU A 50 REMARK 465 PRO A 51 REMARK 465 ASN A 52 REMARK 465 SER A 53 REMARK 465 ASN A 54 REMARK 465 GLU A 55 REMARK 465 ALA A 56 REMARK 465 ILE A 57 REMARK 465 THR A 58 REMARK 465 LYS A 59 REMARK 465 ALA A 60 REMARK 465 SER A 61 REMARK 465 LEU A 62 REMARK 465 ALA A 63 REMARK 465 LYS A 64 REMARK 465 ASN A 65 REMARK 465 GLU A 66 REMARK 465 ILE A 67 REMARK 465 VAL A 68 REMARK 465 GLU A 69 REMARK 465 ALA A 70 REMARK 465 LEU A 71 REMARK 465 LYS A 72 REMARK 465 GLY A 73 REMARK 465 GLU A 74 REMARK 465 VAL A 75 REMARK 465 SER A 76 REMARK 465 ASP A 77 REMARK 465 LEU A 78 REMARK 465 ALA A 79 REMARK 465 PRO A 80 REMARK 465 ILE A 81 REMARK 465 LEU A 82 REMARK 465 GLN A 83 REMARK 465 LYS A 84 REMARK 465 ALA A 85 REMARK 465 THR A 86 REMARK 465 GLU A 87 REMARK 465 ALA A 88 REMARK 465 ARG A 89 REMARK 465 ASN A 90 REMARK 465 SER A 91 REMARK 465 ILE A 92 REMARK 465 ALA A 93 REMARK 465 ASN A 94 REMARK 465 ALA A 95 REMARK 465 VAL A 96 REMARK 465 LEU A 97 REMARK 465 ARG A 98 REMARK 465 ALA A 99 REMARK 465 ASN A 100 REMARK 465 SER A 101 REMARK 465 GLY A 102 REMARK 465 LEU A 103 REMARK 465 ARG A 104 REMARK 465 ASP A 105 REMARK 465 SER A 106 REMARK 465 ARG A 107 REMARK 465 ASN A 108 REMARK 465 GLY A 109 REMARK 465 GLN A 110 REMARK 465 ALA A 111 REMARK 465 LEU A 112 REMARK 465 THR A 113 REMARK 465 LYS A 114 REMARK 465 ALA A 115 REMARK 465 SER A 116 REMARK 465 ASN A 117 REMARK 465 THR A 118 REMARK 465 ALA A 119 REMARK 465 SER A 120 REMARK 465 PHE A 121 REMARK 465 ARG A 122 REMARK 465 ALA A 123 REMARK 465 ALA A 124 REMARK 465 PRO A 377 REMARK 465 ARG A 378 REMARK 465 ILE A 379 REMARK 465 GLU A 380 REMARK 465 GLU A 381 REMARK 465 ARG A 382 REMARK 465 PHE A 383 REMARK 465 LEU A 384 REMARK 465 ASN A 385 REMARK 465 GLU A 386 REMARK 465 LYS A 387 REMARK 465 GLY A 388 REMARK 465 GLY A 389 REMARK 465 LEU A 390 REMARK 465 THR A 391 REMARK 465 ASN A 392 REMARK 465 GLN A 393 REMARK 465 ALA A 394 REMARK 465 ILE A 395 REMARK 465 THR A 396 REMARK 465 VAL A 397 REMARK 465 ASP A 398 REMARK 465 GLY A 399 REMARK 465 VAL A 400 REMARK 465 THR A 401 REMARK 465 PRO A 402 REMARK 465 GLY A 403 REMARK 465 GLY A 404 REMARK 465 THR A 405 REMARK 465 VAL A 406 REMARK 465 THR A 407 REMARK 465 LEU A 408 REMARK 465 THR A 409 REMARK 465 ILE A 410 REMARK 465 ALA A 411 REMARK 465 GLY A 412 REMARK 465 GLU A 413 REMARK 465 THR A 414 REMARK 465 PHE A 415 REMARK 465 THR A 416 REMARK 465 LYS A 417 REMARK 465 GLN A 418 REMARK 465 ALA A 419 REMARK 465 THR A 420 REMARK 465 GLY A 421 REMARK 465 SER A 422 REMARK 465 SER A 423 REMARK 465 THR A 424 REMARK 465 SER A 425 REMARK 465 VAL A 426 REMARK 465 THR A 427 REMARK 465 PHE A 428 REMARK 465 THR A 429 REMARK 465 ALA A 430 REMARK 465 ASN A 431 REMARK 465 GLU A 432 REMARK 465 LEU A 433 REMARK 465 LYS A 434 REMARK 465 LYS A 435 REMARK 465 VAL A 436 REMARK 465 TYR A 437 REMARK 465 ASP A 438 REMARK 465 ARG A 439 REMARK 465 ASN A 440 REMARK 465 GLY A 441 REMARK 465 GLY A 442 REMARK 465 ARG A 443 REMARK 465 LEU A 444 REMARK 465 PRO A 445 REMARK 465 SER A 446 REMARK 465 GLY A 447 REMARK 465 PRO A 448 REMARK 465 VAL A 449 REMARK 465 THR A 450 REMARK 465 ALA A 451 REMARK 465 SER A 452 REMARK 465 THR A 453 REMARK 465 THR A 454 REMARK 465 VAL A 455 REMARK 465 ASN A 456 REMARK 465 GLY A 457 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLN A 311 O HOH A 601 1.94 REMARK 500 O HOH A 751 O HOH A 821 2.05 REMARK 500 O HOH A 839 O HOH A 856 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 188 -82.06 -98.64 REMARK 500 SER A 195 157.82 86.12 REMARK 500 ALA A 215 54.15 -152.86 REMARK 500 THR A 324 -68.12 -104.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 126 OD1 REMARK 620 2 ASP A 126 OD2 53.9 REMARK 620 3 GLU A 128 O 82.1 132.9 REMARK 620 4 ASP A 164 OD1 164.8 138.5 88.0 REMARK 620 5 ASP A 164 OD2 133.7 84.8 142.2 54.4 REMARK 620 6 ASN A 165 OD1 82.5 97.0 92.4 86.4 83.1 REMARK 620 7 ASP A 247 OD2 92.3 81.1 85.2 98.4 101.8 174.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 280 O REMARK 620 2 TYR A 283 O 93.5 REMARK 620 3 ASP A 364 OD1 106.5 129.6 REMARK 620 4 ASP A 364 OD2 94.9 78.5 54.5 REMARK 620 5 HOH A 763 O 85.6 152.6 76.3 128.9 REMARK 620 6 HOH A 799 O 171.4 85.6 80.5 93.3 91.3 REMARK 620 7 HOH A 809 O 84.6 78.0 147.9 156.5 74.6 86.8 REMARK 620 N 1 2 3 4 5 6 DBREF 8PXC A 1 457 PDB 8PXC 8PXC 1 457 SEQRES 1 A 457 GLY LEU VAL LYS ASN GLU ASP VAL THR ALA GLU SER SER SEQRES 2 A 457 LEU THR MET THR SER VAL ALA LEU THR GLU LYS GLN SER SEQRES 3 A 457 GLU GLU LYS ARG LYS LYS LEU ASP ALA LEU SER ALA GLU SEQRES 4 A 457 ILE GLY GLN PHE LEU ALA GLN ALA GLN GLY LEU PRO ASN SEQRES 5 A 457 SER ASN GLU ALA ILE THR LYS ALA SER LEU ALA LYS ASN SEQRES 6 A 457 GLU ILE VAL GLU ALA LEU LYS GLY GLU VAL SER ASP LEU SEQRES 7 A 457 ALA PRO ILE LEU GLN LYS ALA THR GLU ALA ARG ASN SER SEQRES 8 A 457 ILE ALA ASN ALA VAL LEU ARG ALA ASN SER GLY LEU ARG SEQRES 9 A 457 ASP SER ARG ASN GLY GLN ALA LEU THR LYS ALA SER ASN SEQRES 10 A 457 THR ALA SER PHE ARG ALA ALA ARG ASP THR GLU LYS PRO SEQRES 11 A 457 GLU LEU GLN LYS ILE THR VAL THR GLY GLY ALA VAL LEU SEQRES 12 A 457 GLU GLY GLN LYS PHE LYS ILE TYR ARG GLU GLU ASN PHE SEQRES 13 A 457 SER ALA THR ILE GLU PHE THR ASP ASN SER GLY ARG ILE SEQRES 14 A 457 GLU HIS ALA LYS PHE VAL PRO THR ALA VAL PRO ALA ALA SEQRES 15 A 457 TYR PRO ALA THR SER THR VAL VAL SER PHE THR THR SER SEQRES 16 A 457 ASN GLY GLN SER ILE SER MET ILE VAL PRO THR ASN LYS SEQRES 17 A 457 LEU ALA LYS ASP GLY ASN ALA THR ALA SER ASN PRO PHE SEQRES 18 A 457 THR VAL SER ILE THR GLY SER VAL GLY LYS ASN GLN ALA SEQRES 19 A 457 VAL ASN SER LEU TRP THR ARG TYR VAL PHE THR TYR ASP SEQRES 20 A 457 GLN GLU GLY ASN PHE SER GLY ASN THR THR ASP VAL GLY SEQRES 21 A 457 LEU VAL LYS ASP LEU THR ALA ASN PRO ALA ALA ILE GLN SEQRES 22 A 457 PHE GLU VAL HIS ALA GLN SER GLU LYS TYR GLU PRO ALA SEQRES 23 A 457 ILE ASN ALA GLU VAL ASN ARG ASN PHE THR LEU THR ALA SEQRES 24 A 457 ASN SER GLY THR VAL SER VAL GLY GLU ALA SER GLN TYR SEQRES 25 A 457 ILE THR ASN ALA THR GLY THR PRO GLU LEU PRO THR THR SEQRES 26 A 457 GLY ILE THR LYS GLY THR ARG THR THR TYR THR TRP LYS SEQRES 27 A 457 SER GLY THR ASN THR ASN LEU SER ALA GLY ARG HIS THR SEQRES 28 A 457 LEU THR ALA VAL VAL THR TYR PRO ASP GLY SER THR ASP SEQRES 29 A 457 GLU ILE ASP VAL SER PHE THR VAL ARG PRO GLN THR PRO SEQRES 30 A 457 ARG ILE GLU GLU ARG PHE LEU ASN GLU LYS GLY GLY LEU SEQRES 31 A 457 THR ASN GLN ALA ILE THR VAL ASP GLY VAL THR PRO GLY SEQRES 32 A 457 GLY THR VAL THR LEU THR ILE ALA GLY GLU THR PHE THR SEQRES 33 A 457 LYS GLN ALA THR GLY SER SER THR SER VAL THR PHE THR SEQRES 34 A 457 ALA ASN GLU LEU LYS LYS VAL TYR ASP ARG ASN GLY GLY SEQRES 35 A 457 ARG LEU PRO SER GLY PRO VAL THR ALA SER THR THR VAL SEQRES 36 A 457 ASN GLY HET CA A 501 1 HET CA A 502 1 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA 2(CA 2+) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 HOH *259(H2 O) HELIX 1 AA1 PRO A 205 LEU A 209 5 5 HELIX 2 AA2 ASP A 264 ASN A 268 5 5 HELIX 3 AA3 ALA A 278 TYR A 283 1 6 HELIX 4 AA4 GLU A 308 GLN A 311 5 4 SHEET 1 AA1 5 GLU A 131 GLY A 139 0 SHEET 2 AA1 5 PHE A 156 THR A 163 -1 O THR A 163 N GLU A 131 SHEET 3 AA1 5 PHE A 221 GLY A 227 -1 O PHE A 221 N PHE A 162 SHEET 4 AA1 5 SER A 199 ILE A 203 -1 N SER A 201 O THR A 226 SHEET 5 AA1 5 VAL A 189 THR A 193 -1 N VAL A 190 O MET A 202 SHEET 1 AA2 5 ALA A 141 GLU A 144 0 SHEET 2 AA2 5 LYS A 147 TYR A 151 -1 O LYS A 149 N VAL A 142 SHEET 3 AA2 5 ALA A 271 HIS A 277 1 O GLN A 273 N PHE A 148 SHEET 4 AA2 5 LEU A 238 TYR A 246 -1 N ARG A 241 O ILE A 272 SHEET 5 AA2 5 HIS A 171 VAL A 175 -1 N VAL A 175 O TYR A 242 SHEET 1 AA3 2 PRO A 285 ILE A 287 0 SHEET 2 AA3 2 ILE A 313 ASN A 315 -1 O THR A 314 N ALA A 286 SHEET 1 AA4 4 ASN A 294 THR A 296 0 SHEET 2 AA4 4 THR A 363 ARG A 373 1 O THR A 371 N PHE A 295 SHEET 3 AA4 4 GLY A 348 THR A 357 -1 N LEU A 352 O VAL A 368 SHEET 4 AA4 4 THR A 334 TRP A 337 -1 N THR A 336 O VAL A 355 SHEET 1 AA5 2 VAL A 304 SER A 305 0 SHEET 2 AA5 2 ASN A 344 LEU A 345 -1 O LEU A 345 N VAL A 304 LINK OD1 ASP A 126 CA CA A 502 1555 1555 2.46 LINK OD2 ASP A 126 CA CA A 502 1555 1555 2.41 LINK O GLU A 128 CA CA A 502 1555 1555 2.43 LINK OD1 ASP A 164 CA CA A 502 1555 1555 2.41 LINK OD2 ASP A 164 CA CA A 502 1555 1555 2.42 LINK OD1 ASN A 165 CA CA A 502 1555 1555 2.38 LINK OD2 ASP A 247 CA CA A 502 1555 1555 2.34 LINK O SER A 280 CA CA A 501 1555 1555 2.36 LINK O TYR A 283 CA CA A 501 1555 1555 2.41 LINK OD1 ASP A 364 CA CA A 501 1555 1555 2.41 LINK OD2 ASP A 364 CA CA A 501 1555 1555 2.44 LINK CA CA A 501 O HOH A 763 1555 4555 2.27 LINK CA CA A 501 O HOH A 799 1555 4555 2.27 LINK CA CA A 501 O HOH A 809 1555 1555 2.57 CRYST1 132.810 30.400 90.600 90.00 127.04 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007530 0.000000 0.005681 0.00000 SCALE2 0.000000 0.032895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013827 0.00000