HEADER VIRAL PROTEIN 23-JUL-23 8PXJ TITLE STRUCTURE OF WHITEWATER ARROYO VIRUS GP1 GLYCOPROTEIN, SOLVED AT TITLE 2 WAVELENGTH 2.75 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN G1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GP1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAMMARENAVIRUS WHITEWATERENSE; SOURCE 3 ORGANISM_TAXID: 3052331; SOURCE 4 GENE: GPC, GP-C; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS GLYCOPROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.EL OMARI,R.DUMAN,V.MYKHAYLYK,C.ORR,T.A.BOWDEN,A.WAGNER REVDAT 1 25-OCT-23 8PXJ 0 JRNL AUTH K.EL OMARI,R.DUMAN,V.MYKHAYLYK,C.M.ORR,M.LATIMER-SMITH, JRNL AUTH 2 G.WINTER,V.GRAMA,F.QU,K.BOUNTRA,H.S.KWONG,M.ROMANO,R.I.REIS, JRNL AUTH 3 L.VOGELEY,L.VECCHIA,C.D.OWEN,S.WITTMANN,M.RENNER,M.SENDA, JRNL AUTH 4 N.MATSUGAKI,Y.KAWANO,T.A.BOWDEN,I.MORAES,J.M.GRIMES, JRNL AUTH 5 E.J.MANCINI,M.A.WALSH,C.R.GUZZO,R.J.OWENS,E.Y.JONES, JRNL AUTH 6 D.G.BROWN,D.I.STUART,K.BEIS,A.WAGNER JRNL TITL EXPERIMENTAL PHASING OPPORTUNITIES FOR MACROMOLECULAR JRNL TITL 2 CRYSTALLOGRAPHY AT VERY LONG WAVELENGTHS. JRNL REF COMMUN CHEM V. 6 219 2023 JRNL REFN ESSN 2399-3669 JRNL PMID 37828292 JRNL DOI 10.1038/S42004-023-01014-0 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 6431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 441 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.4760 REMARK 3 BIN FREE R VALUE SET COUNT : 12 REMARK 3 BIN FREE R VALUE : 0.5310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 102.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 117.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.30000 REMARK 3 B22 (A**2) : 2.30000 REMARK 3 B33 (A**2) : -7.45000 REMARK 3 B12 (A**2) : 1.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.622 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.339 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.360 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.082 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1252 ; 0.014 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1129 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1702 ; 1.176 ; 1.662 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2601 ; 0.379 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 145 ; 4.698 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 4 ; 5.757 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 196 ;14.249 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 200 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1413 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 282 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 583 ; 7.089 ; 8.272 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 583 ; 7.080 ; 8.275 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 727 ;10.552 ;14.872 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 728 ;10.548 ;14.877 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 669 ; 8.327 ; 8.987 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 662 ; 8.239 ; 8.930 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 964 ;12.238 ;16.114 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5082 ;17.536 ;01.800 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5083 ;17.534 ;01.800 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): 43.7699 13.5606 -5.7353 REMARK 3 T TENSOR REMARK 3 T11: 0.2310 T22: 0.0834 REMARK 3 T33: 0.2354 T12: -0.0694 REMARK 3 T13: 0.0264 T23: 0.1078 REMARK 3 L TENSOR REMARK 3 L11: 4.5061 L22: 5.1688 REMARK 3 L33: 6.0141 L12: 1.8375 REMARK 3 L13: 1.7515 L23: 0.6067 REMARK 3 S TENSOR REMARK 3 S11: 0.1259 S12: -0.3789 S13: -0.4576 REMARK 3 S21: 0.4920 S22: 0.0105 S23: 0.3912 REMARK 3 S31: 1.0083 S32: -0.4938 S33: -0.1364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8PXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I23 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.7552 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6783 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 46.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 30.70 REMARK 200 R MERGE (I) : 0.14040 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 MG/ML PROTEIN, 0.1 M HEPES-NA PH REMARK 280 7.5, AND 0.05 M CADMIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.43000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.43000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.43000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.43000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.43000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.43000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD CD A 309 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 311 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 71 REMARK 465 THR A 72 REMARK 465 GLY A 73 REMARK 465 ALA A 74 REMARK 465 SER A 221 REMARK 465 GLY A 222 REMARK 465 ASN A 223 REMARK 465 HIS A 224 REMARK 465 LEU A 225 REMARK 465 SER A 226 REMARK 465 GLY A 227 REMARK 465 THR A 228 REMARK 465 LYS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 80 57.82 -101.22 REMARK 500 HIS A 204 -162.32 -78.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 307 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 91 NE2 REMARK 620 2 ASP A 110 OD1 126.0 REMARK 620 3 ASP A 110 OD2 127.9 3.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 308 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 99 OE1 REMARK 620 2 GLU A 99 OE1 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 305 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 145 OE1 REMARK 620 2 GLU A 145 OE2 49.3 REMARK 620 3 HIS A 155 NE2 158.2 110.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 306 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 156 O REMARK 620 2 ASP A 181 OD2 97.8 REMARK 620 3 HIS A 182 NE2 97.1 96.2 REMARK 620 N 1 2 DBREF 8PXJ A 74 226 UNP Q911P0 GLYC_WWAVU 74 226 SEQADV 8PXJ GLU A 71 UNP Q911P0 EXPRESSION TAG SEQADV 8PXJ THR A 72 UNP Q911P0 EXPRESSION TAG SEQADV 8PXJ GLY A 73 UNP Q911P0 EXPRESSION TAG SEQADV 8PXJ GLY A 227 UNP Q911P0 EXPRESSION TAG SEQADV 8PXJ THR A 228 UNP Q911P0 EXPRESSION TAG SEQADV 8PXJ LYS A 229 UNP Q911P0 EXPRESSION TAG SEQADV 8PXJ HIS A 230 UNP Q911P0 EXPRESSION TAG SEQADV 8PXJ HIS A 231 UNP Q911P0 EXPRESSION TAG SEQADV 8PXJ HIS A 232 UNP Q911P0 EXPRESSION TAG SEQADV 8PXJ HIS A 233 UNP Q911P0 EXPRESSION TAG SEQADV 8PXJ HIS A 234 UNP Q911P0 EXPRESSION TAG SEQADV 8PXJ HIS A 235 UNP Q911P0 EXPRESSION TAG SEQRES 1 A 165 GLU THR GLY ALA SER TYR ILE THR PRO TYR VAL PRO MET SEQRES 2 A 165 PRO CYS MET ILE ASN ASP THR HIS PHE LEU LEU ARG GLY SEQRES 3 A 165 PRO PHE GLU ALA SER TRP ALA ILE LYS LEU GLU ILE THR SEQRES 4 A 165 ASP VAL THR THR LEU VAL VAL ASP THR ASP ASN VAL ALA SEQRES 5 A 165 ASN PRO THR ASN ILE SER LYS CYS PHE ALA ASN ASN GLN SEQRES 6 A 165 ASP GLU ARG LEU LEU GLY PHE THR MET GLU TRP PHE LEU SEQRES 7 A 165 SER GLY LEU GLU HIS ASP HIS HIS PHE THR PRO GLN ILE SEQRES 8 A 165 ILE CYS GLY ASN VAL SER LYS GLY GLU VAL ASN ALA GLN SEQRES 9 A 165 VAL ASN ILE THR MET GLU ASP HIS CYS SER GLN VAL PHE SEQRES 10 A 165 LEU LYS MET ARG ARG ILE PHE GLY VAL PHE LYS ASN PRO SEQRES 11 A 165 CYS THR SER HIS GLY LYS GLN ASN VAL LEU ILE SER VAL SEQRES 12 A 165 SER ASN TRP THR ASN GLN CYS SER GLY ASN HIS LEU SER SEQRES 13 A 165 GLY THR LYS HIS HIS HIS HIS HIS HIS HET NAG A 301 14 HET NAG A 302 14 HET NAG A 303 14 HET CD A 304 1 HET CD A 305 1 HET CD A 306 1 HET CD A 307 1 HET CD A 308 1 HET CD A 309 1 HET SO4 A 310 5 HET SO4 A 311 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CD CADMIUM ION HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 5 CD 6(CD 2+) FORMUL 11 SO4 2(O4 S 2-) HELIX 1 AA1 ASN A 126 ALA A 132 5 7 HELIX 2 AA2 ASP A 136 LEU A 148 1 13 HELIX 3 AA3 ASN A 165 GLY A 169 5 5 HELIX 4 AA4 MET A 179 GLY A 195 1 17 SHEET 1 AA1 7 MET A 83 ASN A 88 0 SHEET 2 AA1 7 HIS A 91 ARG A 95 -1 O ARG A 95 N MET A 83 SHEET 3 AA1 7 TRP A 102 THR A 109 -1 O LEU A 106 N PHE A 92 SHEET 4 AA1 7 ASN A 208 ASN A 215 -1 O LEU A 210 N GLU A 107 SHEET 5 AA1 7 ALA A 173 ASN A 176 -1 N ALA A 173 O ILE A 211 SHEET 6 AA1 7 ILE A 161 CYS A 163 -1 N ILE A 162 O GLN A 174 SHEET 7 AA1 7 VAL A 121 ALA A 122 -1 N ALA A 122 O ILE A 161 SSBOND 1 CYS A 85 CYS A 220 1555 1555 2.00 SSBOND 2 CYS A 130 CYS A 163 1555 1555 2.05 SSBOND 3 CYS A 183 CYS A 201 1555 1555 2.04 LINK ND2 ASN A 88 C1 NAG A 301 1555 1555 1.45 LINK ND2 ASN A 126 C1 NAG A 303 1555 1555 1.43 LINK ND2 ASN A 176 C1 NAG A 302 1555 1555 1.43 LINK NE2 HIS A 91 CD CD A 307 1555 1555 2.12 LINK OE1 GLU A 99 CD CD A 308 1555 1555 2.25 LINK OE1 GLU A 99 CD CD A 308 1555 2655 2.63 LINK OD1 ASP A 110 CD CD A 307 1555 8555 2.62 LINK OD2 ASP A 110 CD CD A 307 1555 8555 2.39 LINK OE1 GLU A 145 CD CD A 305 1555 12554 2.62 LINK OE2 GLU A 145 CD CD A 305 1555 12554 2.65 LINK OD1 ASP A 154 CD CD A 304 1555 1555 2.43 LINK NE2 HIS A 155 CD CD A 305 1555 1555 2.26 LINK O HIS A 156 CD CD A 306 1555 1555 2.41 LINK OD2 ASP A 181 CD CD A 306 1555 1555 2.41 LINK NE2 HIS A 182 CD CD A 306 1555 1555 2.47 CRYST1 106.830 106.830 74.860 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009361 0.005404 0.000000 0.00000 SCALE2 0.000000 0.010809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013358 0.00000