data_8PXS # _entry.id 8PXS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8PXS pdb_00008pxs 10.2210/pdb8pxs/pdb WWPDB D_1292132146 ? ? BMRB 34838 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Short RNA binding to peptide amyloids' _pdbx_database_related.db_id 34838 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8PXS _pdbx_database_status.recvd_initial_deposition_date 2023-07-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Rout, S.K.' 1 ? 'Cadalbert, R.' 2 ? 'Schroder, N.' 3 ? 'Wiegand, T.' 4 ? 'Zehnder, J.' 5 ? 'Gampp, O.' 6 ? 'Guntert, P.' 7 ? 'Kringler, D.' 8 ? 'Kreutz, C.' 9 ? 'Knorlein, A.' 10 ? 'Hall, J.' 11 ? 'Greenwald, J.' 12 ? 'Riek, R.' 13 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 145 _citation.language ? _citation.page_first 21915 _citation.page_last 21924 _citation.title 'An Analysis of Nucleotide-Amyloid Interactions Reveals Selective Binding to Codon-Sized RNA.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.3c06287 _citation.pdbx_database_id_PubMed 37782045 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rout, S.K.' 1 ? primary 'Cadalbert, R.' 2 ? primary 'Schroder, N.' 3 ? primary 'Wang, J.' 4 ? primary 'Zehnder, J.' 5 ? primary 'Gampp, O.' 6 ? primary 'Wiegand, T.' 7 ? primary 'Guntert, P.' 8 ? primary 'Klingler, D.' 9 0000-0003-4056-6810 primary 'Kreutz, C.' 10 0000-0002-7018-9326 primary 'Knorlein, A.' 11 ? primary 'Hall, J.' 12 0000-0003-4160-7135 primary 'Greenwald, J.' 13 ? primary 'Riek, R.' 14 0000-0002-6333-066X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE 853.985 10 ? ? ? ? 2 polymer syn ;RNA (5'-R(P*GP*UP*CP*A)-3') ; 1240.802 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes 'VAQAQINI(NH2)' VAQAQINIX A,B,C,D,E,F,G,H,I,J ? 2 polyribonucleotide no no GUCA GUCA R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ALA n 1 3 GLN n 1 4 ALA n 1 5 GLN n 1 6 ILE n 1 7 ASN n 1 8 ILE n 1 9 NH2 n 2 1 G n 2 2 U n 2 3 C n 2 4 A n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 9 'Escherichia coli' ? 562 'artificially designed' 2 1 sample 1 4 'Escherichia coli' ? 562 'artificially designed' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8PXS 8PXS ? 1 ? 1 2 PDB 8PXS 8PXS ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8PXS A 1 ? 9 ? 8PXS 1 ? 9 ? 1 9 2 1 8PXS B 1 ? 9 ? 8PXS 1 ? 9 ? 1 9 3 1 8PXS C 1 ? 9 ? 8PXS 1 ? 9 ? 1 9 4 2 8PXS R 1 ? 4 ? 8PXS 1 ? 4 ? 1 4 5 1 8PXS D 1 ? 9 ? 8PXS 1 ? 9 ? 1 9 6 1 8PXS E 1 ? 9 ? 8PXS 1 ? 9 ? 1 9 7 1 8PXS F 1 ? 9 ? 8PXS 1 ? 9 ? 1 9 8 1 8PXS G 1 ? 9 ? 8PXS 1 ? 9 ? 1 9 9 1 8PXS H 1 ? 9 ? 8PXS 1 ? 9 ? 1 9 10 1 8PXS I 1 ? 9 ? 8PXS 1 ? 9 ? 1 9 11 1 8PXS J 1 ? 9 ? 8PXS 1 ? 9 ? 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 'DARR 20 ms' 1 anisotropic 2 1 1 'DARR 150 ms' 1 anisotropic 3 1 1 NCA 1 anisotropic 4 1 1 NCO 1 anisotropic 5 1 2 'DARR 20 ms' 1 anisotropic 18 1 2 'DARR 150 ms' 1 anisotropic 17 1 3 'PAR 8 ms' 1 anisotropic 16 1 3 PDSD 1 anisotropic 15 1 3 'DARR 20 ms' 1 anisotropic 14 1 4 'DARR 20 ms' 1 anisotropic 13 1 4 NCA 1 anisotropic 12 1 4 NCO 1 anisotropic 11 1 5 'DARR 150 ms' 1 anisotropic 10 1 5 'DARR 450 ms' 1 anisotropic 9 1 1 CHHC 1 anisotropic 8 1 2 CHHC 1 anisotropic 7 1 3 'PAIN 6 ms' 1 anisotropic 6 1 4 CHHP 1 anisotropic 20 1 4 '31P PDSD' 1 anisotropic 19 1 4 '31P DP' 1 anisotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 272 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 3 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3'), 100% D2O ; '100% D2O' 'Sample 1' 'fibrous protein' 'amyloid fibril; uniformly labeled peptide' 2 ;10 na mixed VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3'), 100% D2O ; '100% D2O' 'Sample 2' 'fibrous protein' 'amyloid fibril; mixed unlabeled and uniformly labeled peptides in a ratio of 2.8:1' 3 ;10 na mixed VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3'), 100% D2O ; '100% D2O' 'Sample 3' 'fibrous protein' 'amyloid fibril; mixed-labeled peptides V15N-AQAQI15N-I-NH2 and V13C-AQAQI13C-I-NH2 in a ratio 1:1' 4 ;10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na RNA (5'-R(P*GP*UP*CP*A)-3'), 100% D2O ; '100% D2O' 'Sample 4' 'fibrous protein' 'amyloid fibril; uniformly labeled peptide amyloids in presence of unlabeled RNA pGUCAp' 5 ;10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na specificly labeled RNA (5'-R(P*GP*UP*CP*A)-3'), 100% D2O ; '100% D2O' 'Sample 5' 'fibrous protein' 'amyloid fibril; uniformly labeled peptide amyloids in presence of specifically 13C-labeled RNA pGUCAp' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 850 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 8PXS _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 8PXS _pdbx_nmr_ensemble.conformers_calculated_total_number 4000 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8PXS _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 2 'chemical shift assignment' XEASY ? 'Bartels et al.' 1 'structure calculation' CYANA 3.98.15 'P. Guntert' 4 'peak picking' XEASY ? 'Bartels et al.' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8PXS _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLID-STATE NMR' _exptl.method_details ? # _struct.entry_id 8PXS _struct.title 'Short RNA binding to peptide amyloids' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8PXS _struct_keywords.text 'amyloids, RNA, genetic code, origin of life, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ILE 8 C ? ? ? 1_555 A NH2 9 N ? ? A ILE 8 A NH2 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? B ILE 8 C ? ? ? 1_555 B NH2 9 N ? ? B ILE 8 B NH2 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? C ILE 8 C ? ? ? 1_555 C NH2 9 N ? ? C ILE 8 C NH2 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? E ILE 8 C ? ? ? 1_555 E NH2 9 N ? ? D ILE 8 D NH2 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? F ILE 8 C ? ? ? 1_555 F NH2 9 N ? ? E ILE 8 E NH2 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? G ILE 8 C ? ? ? 1_555 G NH2 9 N ? ? F ILE 8 F NH2 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? H ILE 8 C ? ? ? 1_555 H NH2 9 N ? ? G ILE 8 G NH2 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? I ILE 8 C ? ? ? 1_555 I NH2 9 N ? ? H ILE 8 H NH2 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? J ILE 8 C ? ? ? 1_555 J NH2 9 N ? ? I ILE 8 I NH2 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale10 covale both ? K ILE 8 C ? ? ? 1_555 K NH2 9 N ? ? J ILE 8 J NH2 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 2 ? ASN A 7 ? ALA A 2 ASN A 7 AA1 2 ALA B 2 ? ASN B 7 ? ALA B 2 ASN B 7 AA1 3 ALA C 2 ? ASN C 7 ? ALA C 2 ASN C 7 AA1 4 ALA E 2 ? ASN E 7 ? ALA D 2 ASN D 7 AA1 5 ALA F 2 ? ASN F 7 ? ALA E 2 ASN E 7 AA2 1 ALA G 2 ? ASN G 7 ? ALA F 2 ASN F 7 AA2 2 ALA H 2 ? ASN H 7 ? ALA G 2 ASN G 7 AA2 3 ALA I 2 ? ASN I 7 ? ALA H 2 ASN H 7 AA2 4 ALA J 2 ? ASN J 7 ? ALA I 2 ASN I 7 AA2 5 ALA K 2 ? ASN K 7 ? ALA J 2 ASN J 7 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 4 ? N ALA A 4 O GLN B 5 ? O GLN B 5 AA1 2 3 N ILE B 6 ? N ILE B 6 O GLN C 5 ? O GLN C 5 AA1 3 4 N ALA C 4 ? N ALA C 4 O GLN E 5 ? O GLN D 5 AA1 4 5 N ILE E 6 ? N ILE D 6 O GLN F 5 ? O GLN E 5 AA2 1 2 N ALA G 4 ? N ALA F 4 O GLN H 5 ? O GLN G 5 AA2 2 3 N ALA H 4 ? N ALA G 4 O GLN I 5 ? O GLN H 5 AA2 3 4 N ALA I 4 ? N ALA H 4 O GLN J 5 ? O GLN I 5 AA2 4 5 N ALA J 4 ? N ALA I 4 O GLN K 5 ? O GLN J 5 # _atom_sites.entry_id 8PXS _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 NH2 9 9 9 NH2 NH2 A . n B 1 1 VAL 1 1 1 VAL VAL B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 GLN 3 3 3 GLN GLN B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 GLN 5 5 5 GLN GLN B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 ASN 7 7 7 ASN ASN B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 NH2 9 9 9 NH2 NH2 B . n C 1 1 VAL 1 1 1 VAL VAL C . n C 1 2 ALA 2 2 2 ALA ALA C . n C 1 3 GLN 3 3 3 GLN GLN C . n C 1 4 ALA 4 4 4 ALA ALA C . n C 1 5 GLN 5 5 5 GLN GLN C . n C 1 6 ILE 6 6 6 ILE ILE C . n C 1 7 ASN 7 7 7 ASN ASN C . n C 1 8 ILE 8 8 8 ILE ILE C . n C 1 9 NH2 9 9 9 NH2 NH2 C . n D 2 1 G 1 1 1 G G R . n D 2 2 U 2 2 2 U U R . n D 2 3 C 3 3 3 C C R . n D 2 4 A 4 4 4 A A R . n E 1 1 VAL 1 1 1 VAL VAL D . n E 1 2 ALA 2 2 2 ALA ALA D . n E 1 3 GLN 3 3 3 GLN GLN D . n E 1 4 ALA 4 4 4 ALA ALA D . n E 1 5 GLN 5 5 5 GLN GLN D . n E 1 6 ILE 6 6 6 ILE ILE D . n E 1 7 ASN 7 7 7 ASN ASN D . n E 1 8 ILE 8 8 8 ILE ILE D . n E 1 9 NH2 9 9 9 NH2 NH2 D . n F 1 1 VAL 1 1 1 VAL VAL E . n F 1 2 ALA 2 2 2 ALA ALA E . n F 1 3 GLN 3 3 3 GLN GLN E . n F 1 4 ALA 4 4 4 ALA ALA E . n F 1 5 GLN 5 5 5 GLN GLN E . n F 1 6 ILE 6 6 6 ILE ILE E . n F 1 7 ASN 7 7 7 ASN ASN E . n F 1 8 ILE 8 8 8 ILE ILE E . n F 1 9 NH2 9 9 9 NH2 NH2 E . n G 1 1 VAL 1 1 1 VAL VAL F . n G 1 2 ALA 2 2 2 ALA ALA F . n G 1 3 GLN 3 3 3 GLN GLN F . n G 1 4 ALA 4 4 4 ALA ALA F . n G 1 5 GLN 5 5 5 GLN GLN F . n G 1 6 ILE 6 6 6 ILE ILE F . n G 1 7 ASN 7 7 7 ASN ASN F . n G 1 8 ILE 8 8 8 ILE ILE F . n G 1 9 NH2 9 9 9 NH2 NH2 F . n H 1 1 VAL 1 1 1 VAL VAL G . n H 1 2 ALA 2 2 2 ALA ALA G . n H 1 3 GLN 3 3 3 GLN GLN G . n H 1 4 ALA 4 4 4 ALA ALA G . n H 1 5 GLN 5 5 5 GLN GLN G . n H 1 6 ILE 6 6 6 ILE ILE G . n H 1 7 ASN 7 7 7 ASN ASN G . n H 1 8 ILE 8 8 8 ILE ILE G . n H 1 9 NH2 9 9 9 NH2 NH2 G . n I 1 1 VAL 1 1 1 VAL VAL H . n I 1 2 ALA 2 2 2 ALA ALA H . n I 1 3 GLN 3 3 3 GLN GLN H . n I 1 4 ALA 4 4 4 ALA ALA H . n I 1 5 GLN 5 5 5 GLN GLN H . n I 1 6 ILE 6 6 6 ILE ILE H . n I 1 7 ASN 7 7 7 ASN ASN H . n I 1 8 ILE 8 8 8 ILE ILE H . n I 1 9 NH2 9 9 9 NH2 NH2 H . n J 1 1 VAL 1 1 1 VAL VAL I . n J 1 2 ALA 2 2 2 ALA ALA I . n J 1 3 GLN 3 3 3 GLN GLN I . n J 1 4 ALA 4 4 4 ALA ALA I . n J 1 5 GLN 5 5 5 GLN GLN I . n J 1 6 ILE 6 6 6 ILE ILE I . n J 1 7 ASN 7 7 7 ASN ASN I . n J 1 8 ILE 8 8 8 ILE ILE I . n J 1 9 NH2 9 9 9 NH2 NH2 I . n K 1 1 VAL 1 1 1 VAL VAL J . n K 1 2 ALA 2 2 2 ALA ALA J . n K 1 3 GLN 3 3 3 GLN GLN J . n K 1 4 ALA 4 4 4 ALA ALA J . n K 1 5 GLN 5 5 5 GLN GLN J . n K 1 6 ILE 6 6 6 ILE ILE J . n K 1 7 ASN 7 7 7 ASN ASN J . n K 1 8 ILE 8 8 8 ILE ILE J . n K 1 9 NH2 9 9 9 NH2 NH2 J . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email roland.riek@phys.chem.ethz.ch _pdbx_contact_author.name_first Roland _pdbx_contact_author.name_last Riek _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6333-066X # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE 10 ? na '[U-13C; U-15N]' 1 ;RNA (5'-R(P*GP*UP*CP*A)-3') ; 1.5 ? na '[U-13C; U-15N]' 2 VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE 10 ? na mixed 2 ;RNA (5'-R(P*GP*UP*CP*A)-3') ; 1.5 ? na '[U-13C; U-15N]' 3 VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE 10 ? na mixed 3 ;RNA (5'-R(P*GP*UP*CP*A)-3') ; 1.5 ? na '[U-13C; U-15N]' 4 VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE 10 ? na '[U-13C; U-15N]' 4 ;RNA (5'-R(P*GP*UP*CP*A)-3') ; 1.5 ? na 'natural abundance' 5 VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE 10 ? na '[U-13C; U-15N]' 5 ;RNA (5'-R(P*GP*UP*CP*A)-3') ; 1.5 ? na 'specificly labeled' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 R G 1 ? ? N1 R G 1 ? ? C2 R G 1 ? ? 118.50 125.10 -6.60 0.60 N 2 1 N1 R G 1 ? ? C2 R G 1 ? ? N3 R G 1 ? ? 129.10 123.90 5.20 0.60 N 3 1 C5 R G 1 ? ? C6 R G 1 ? ? N1 R G 1 ? ? 117.40 111.50 5.90 0.50 N 4 1 "O4'" R U 2 ? ? "C4'" R U 2 ? ? "C3'" R U 2 ? ? 95.53 104.00 -8.47 1.00 N 5 1 "C1'" R U 2 ? ? "O4'" R U 2 ? ? "C4'" R U 2 ? ? 117.56 109.90 7.66 0.80 N 6 1 "O4'" R C 3 ? ? "C4'" R C 3 ? ? "C3'" R C 3 ? ? 93.06 104.00 -10.94 1.00 N 7 1 "C1'" R A 4 ? ? "O4'" R A 4 ? ? "C4'" R A 4 ? ? 116.08 109.90 6.18 0.80 N 8 2 "O4'" R G 1 ? ? "C4'" R G 1 ? ? "C3'" R G 1 ? ? 97.19 104.00 -6.81 1.00 N 9 2 "C1'" R G 1 ? ? "O4'" R G 1 ? ? "C4'" R G 1 ? ? 118.02 109.90 8.12 0.80 N 10 2 C6 R G 1 ? ? N1 R G 1 ? ? C2 R G 1 ? ? 118.50 125.10 -6.60 0.60 N 11 2 N1 R G 1 ? ? C2 R G 1 ? ? N3 R G 1 ? ? 129.10 123.90 5.20 0.60 N 12 2 C5 R G 1 ? ? C6 R G 1 ? ? N1 R G 1 ? ? 117.40 111.50 5.90 0.50 N 13 2 "O4'" R U 2 ? ? "C4'" R U 2 ? ? "C3'" R U 2 ? ? 96.52 104.00 -7.48 1.00 N 14 2 "C1'" R U 2 ? ? "O4'" R U 2 ? ? "C4'" R U 2 ? ? 118.00 109.90 8.10 0.80 N 15 2 "C1'" R C 3 ? ? "O4'" R C 3 ? ? "C4'" R C 3 ? ? 114.90 109.90 5.00 0.80 N 16 2 "O4'" R A 4 ? ? "C4'" R A 4 ? ? "C3'" R A 4 ? ? 97.44 104.00 -6.56 1.00 N 17 2 "C1'" R A 4 ? ? "O4'" R A 4 ? ? "C4'" R A 4 ? ? 118.06 109.90 8.16 0.80 N 18 3 "O4'" R G 1 ? ? "C4'" R G 1 ? ? "C3'" R G 1 ? ? 94.42 104.00 -9.58 1.00 N 19 3 C6 R G 1 ? ? N1 R G 1 ? ? C2 R G 1 ? ? 118.50 125.10 -6.60 0.60 N 20 3 N1 R G 1 ? ? C2 R G 1 ? ? N3 R G 1 ? ? 129.10 123.90 5.20 0.60 N 21 3 C5 R G 1 ? ? C6 R G 1 ? ? N1 R G 1 ? ? 117.40 111.50 5.90 0.50 N 22 3 "O4'" R U 2 ? ? "C4'" R U 2 ? ? "C3'" R U 2 ? ? 93.23 104.00 -10.77 1.00 N 23 3 "O4'" R C 3 ? ? "C4'" R C 3 ? ? "C3'" R C 3 ? ? 92.86 104.00 -11.14 1.00 N 24 3 "C1'" R A 4 ? ? "O4'" R A 4 ? ? "C4'" R A 4 ? ? 117.14 109.90 7.24 0.80 N 25 4 C6 R G 1 ? ? N1 R G 1 ? ? C2 R G 1 ? ? 118.51 125.10 -6.59 0.60 N 26 4 N1 R G 1 ? ? C2 R G 1 ? ? N3 R G 1 ? ? 129.10 123.90 5.20 0.60 N 27 4 C5 R G 1 ? ? C6 R G 1 ? ? N1 R G 1 ? ? 117.40 111.50 5.90 0.50 N 28 4 "O4'" R U 2 ? ? "C4'" R U 2 ? ? "C3'" R U 2 ? ? 94.74 104.00 -9.26 1.00 N 29 4 "C1'" R U 2 ? ? "O4'" R U 2 ? ? "C4'" R U 2 ? ? 117.00 109.90 7.10 0.80 N 30 4 "O4'" R C 3 ? ? "C4'" R C 3 ? ? "C3'" R C 3 ? ? 93.14 104.00 -10.86 1.00 N 31 4 "C1'" R A 4 ? ? "O4'" R A 4 ? ? "C4'" R A 4 ? ? 118.03 109.90 8.13 0.80 N 32 5 "C1'" R G 1 ? ? "O4'" R G 1 ? ? "C4'" R G 1 ? ? 116.58 109.90 6.68 0.80 N 33 5 C6 R G 1 ? ? N1 R G 1 ? ? C2 R G 1 ? ? 118.50 125.10 -6.60 0.60 N 34 5 N1 R G 1 ? ? C2 R G 1 ? ? N3 R G 1 ? ? 129.10 123.90 5.20 0.60 N 35 5 C5 R G 1 ? ? C6 R G 1 ? ? N1 R G 1 ? ? 117.40 111.50 5.90 0.50 N 36 5 "C1'" R U 2 ? ? "O4'" R U 2 ? ? "C4'" R U 2 ? ? 118.08 109.90 8.18 0.80 N 37 5 "O4'" R C 3 ? ? "C4'" R C 3 ? ? "C3'" R C 3 ? ? 93.51 104.00 -10.49 1.00 N 38 5 "C1'" R A 4 ? ? "O4'" R A 4 ? ? "C4'" R A 4 ? ? 116.09 109.90 6.19 0.80 N 39 6 "O4'" R G 1 ? ? "C4'" R G 1 ? ? "C3'" R G 1 ? ? 95.62 104.00 -8.38 1.00 N 40 6 "C1'" R G 1 ? ? "O4'" R G 1 ? ? "C4'" R G 1 ? ? 117.62 109.90 7.72 0.80 N 41 6 C6 R G 1 ? ? N1 R G 1 ? ? C2 R G 1 ? ? 118.51 125.10 -6.59 0.60 N 42 6 N1 R G 1 ? ? C2 R G 1 ? ? N3 R G 1 ? ? 129.10 123.90 5.20 0.60 N 43 6 C5 R G 1 ? ? C6 R G 1 ? ? N1 R G 1 ? ? 117.40 111.50 5.90 0.50 N 44 6 "C1'" R C 3 ? ? "O4'" R C 3 ? ? "C4'" R C 3 ? ? 115.38 109.90 5.48 0.80 N 45 6 "C1'" R A 4 ? ? "O4'" R A 4 ? ? "C4'" R A 4 ? ? 114.83 109.90 4.93 0.80 N 46 7 "O4'" R G 1 ? ? "C4'" R G 1 ? ? "C3'" R G 1 ? ? 93.00 104.00 -11.00 1.00 N 47 7 C6 R G 1 ? ? N1 R G 1 ? ? C2 R G 1 ? ? 118.50 125.10 -6.60 0.60 N 48 7 N1 R G 1 ? ? C2 R G 1 ? ? N3 R G 1 ? ? 129.10 123.90 5.20 0.60 N 49 7 C5 R G 1 ? ? C6 R G 1 ? ? N1 R G 1 ? ? 117.40 111.50 5.90 0.50 N 50 7 "O4'" R U 2 ? ? "C4'" R U 2 ? ? "C3'" R U 2 ? ? 95.48 104.00 -8.52 1.00 N 51 7 "C1'" R U 2 ? ? "O4'" R U 2 ? ? "C4'" R U 2 ? ? 117.52 109.90 7.62 0.80 N 52 7 "O4'" R C 3 ? ? "C4'" R C 3 ? ? "C3'" R C 3 ? ? 93.32 104.00 -10.68 1.00 N 53 7 "C1'" R A 4 ? ? "O4'" R A 4 ? ? "C4'" R A 4 ? ? 117.87 109.90 7.97 0.80 N 54 8 "C1'" R G 1 ? ? "O4'" R G 1 ? ? "C4'" R G 1 ? ? 116.66 109.90 6.76 0.80 N 55 8 C6 R G 1 ? ? N1 R G 1 ? ? C2 R G 1 ? ? 118.50 125.10 -6.60 0.60 N 56 8 N1 R G 1 ? ? C2 R G 1 ? ? N3 R G 1 ? ? 129.10 123.90 5.20 0.60 N 57 8 C5 R G 1 ? ? C6 R G 1 ? ? N1 R G 1 ? ? 117.40 111.50 5.90 0.50 N 58 8 "O4'" R U 2 ? ? "C4'" R U 2 ? ? "C3'" R U 2 ? ? 95.36 104.00 -8.64 1.00 N 59 8 "C1'" R U 2 ? ? "O4'" R U 2 ? ? "C4'" R U 2 ? ? 117.44 109.90 7.54 0.80 N 60 8 "O4'" R C 3 ? ? "C4'" R C 3 ? ? "C3'" R C 3 ? ? 92.82 104.00 -11.18 1.00 N 61 8 "C1'" R A 4 ? ? "O4'" R A 4 ? ? "C4'" R A 4 ? ? 117.20 109.90 7.30 0.80 N 62 9 "O4'" R G 1 ? ? "C4'" R G 1 ? ? "C3'" R G 1 ? ? 95.89 104.00 -8.11 1.00 N 63 9 "C1'" R G 1 ? ? "O4'" R G 1 ? ? "C4'" R G 1 ? ? 117.64 109.90 7.74 0.80 N 64 9 C6 R G 1 ? ? N1 R G 1 ? ? C2 R G 1 ? ? 118.50 125.10 -6.60 0.60 N 65 9 N1 R G 1 ? ? C2 R G 1 ? ? N3 R G 1 ? ? 129.11 123.90 5.21 0.60 N 66 9 C5 R G 1 ? ? C6 R G 1 ? ? N1 R G 1 ? ? 117.40 111.50 5.90 0.50 N 67 9 "C1'" R C 3 ? ? "O4'" R C 3 ? ? "C4'" R C 3 ? ? 116.83 109.90 6.93 0.80 N 68 9 "C1'" R A 4 ? ? "O4'" R A 4 ? ? "C4'" R A 4 ? ? 117.97 109.90 8.07 0.80 N 69 10 C6 R G 1 ? ? N1 R G 1 ? ? C2 R G 1 ? ? 118.51 125.10 -6.59 0.60 N 70 10 N1 R G 1 ? ? C2 R G 1 ? ? N3 R G 1 ? ? 129.11 123.90 5.21 0.60 N 71 10 C5 R G 1 ? ? C6 R G 1 ? ? N1 R G 1 ? ? 117.39 111.50 5.89 0.50 N 72 10 "C1'" R C 3 ? ? "O4'" R C 3 ? ? "C4'" R C 3 ? ? 116.05 109.90 6.15 0.80 N 73 10 "C1'" R A 4 ? ? "O4'" R A 4 ? ? "C4'" R A 4 ? ? 117.73 109.90 7.83 0.80 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ASN N N N N 51 ASN CA C N S 52 ASN C C N N 53 ASN O O N N 54 ASN CB C N N 55 ASN CG C N N 56 ASN OD1 O N N 57 ASN ND2 N N N 58 ASN OXT O N N 59 ASN H H N N 60 ASN H2 H N N 61 ASN HA H N N 62 ASN HB2 H N N 63 ASN HB3 H N N 64 ASN HD21 H N N 65 ASN HD22 H N N 66 ASN HXT H N N 67 C OP3 O N N 68 C P P N N 69 C OP1 O N N 70 C OP2 O N N 71 C "O5'" O N N 72 C "C5'" C N N 73 C "C4'" C N R 74 C "O4'" O N N 75 C "C3'" C N S 76 C "O3'" O N N 77 C "C2'" C N R 78 C "O2'" O N N 79 C "C1'" C N R 80 C N1 N N N 81 C C2 C N N 82 C O2 O N N 83 C N3 N N N 84 C C4 C N N 85 C N4 N N N 86 C C5 C N N 87 C C6 C N N 88 C HOP3 H N N 89 C HOP2 H N N 90 C "H5'" H N N 91 C "H5''" H N N 92 C "H4'" H N N 93 C "H3'" H N N 94 C "HO3'" H N N 95 C "H2'" H N N 96 C "HO2'" H N N 97 C "H1'" H N N 98 C H41 H N N 99 C H42 H N N 100 C H5 H N N 101 C H6 H N N 102 G OP3 O N N 103 G P P N N 104 G OP1 O N N 105 G OP2 O N N 106 G "O5'" O N N 107 G "C5'" C N N 108 G "C4'" C N R 109 G "O4'" O N N 110 G "C3'" C N S 111 G "O3'" O N N 112 G "C2'" C N R 113 G "O2'" O N N 114 G "C1'" C N R 115 G N9 N Y N 116 G C8 C Y N 117 G N7 N Y N 118 G C5 C Y N 119 G C6 C N N 120 G O6 O N N 121 G N1 N N N 122 G C2 C N N 123 G N2 N N N 124 G N3 N N N 125 G C4 C Y N 126 G HOP3 H N N 127 G HOP2 H N N 128 G "H5'" H N N 129 G "H5''" H N N 130 G "H4'" H N N 131 G "H3'" H N N 132 G "HO3'" H N N 133 G "H2'" H N N 134 G "HO2'" H N N 135 G "H1'" H N N 136 G H8 H N N 137 G H1 H N N 138 G H21 H N N 139 G H22 H N N 140 GLN N N N N 141 GLN CA C N S 142 GLN C C N N 143 GLN O O N N 144 GLN CB C N N 145 GLN CG C N N 146 GLN CD C N N 147 GLN OE1 O N N 148 GLN NE2 N N N 149 GLN OXT O N N 150 GLN H H N N 151 GLN H2 H N N 152 GLN HA H N N 153 GLN HB2 H N N 154 GLN HB3 H N N 155 GLN HG2 H N N 156 GLN HG3 H N N 157 GLN HE21 H N N 158 GLN HE22 H N N 159 GLN HXT H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 NH2 N N N N 183 NH2 HN1 H N N 184 NH2 HN2 H N N 185 U OP3 O N N 186 U P P N N 187 U OP1 O N N 188 U OP2 O N N 189 U "O5'" O N N 190 U "C5'" C N N 191 U "C4'" C N R 192 U "O4'" O N N 193 U "C3'" C N S 194 U "O3'" O N N 195 U "C2'" C N R 196 U "O2'" O N N 197 U "C1'" C N R 198 U N1 N N N 199 U C2 C N N 200 U O2 O N N 201 U N3 N N N 202 U C4 C N N 203 U O4 O N N 204 U C5 C N N 205 U C6 C N N 206 U HOP3 H N N 207 U HOP2 H N N 208 U "H5'" H N N 209 U "H5''" H N N 210 U "H4'" H N N 211 U "H3'" H N N 212 U "HO3'" H N N 213 U "H2'" H N N 214 U "HO2'" H N N 215 U "H1'" H N N 216 U H3 H N N 217 U H5 H N N 218 U H6 H N N 219 VAL N N N N 220 VAL CA C N S 221 VAL C C N N 222 VAL O O N N 223 VAL CB C N N 224 VAL CG1 C N N 225 VAL CG2 C N N 226 VAL OXT O N N 227 VAL H H N N 228 VAL H2 H N N 229 VAL HA H N N 230 VAL HB H N N 231 VAL HG11 H N N 232 VAL HG12 H N N 233 VAL HG13 H N N 234 VAL HG21 H N N 235 VAL HG22 H N N 236 VAL HG23 H N N 237 VAL HXT H N N 238 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ASN N CA sing N N 52 ASN N H sing N N 53 ASN N H2 sing N N 54 ASN CA C sing N N 55 ASN CA CB sing N N 56 ASN CA HA sing N N 57 ASN C O doub N N 58 ASN C OXT sing N N 59 ASN CB CG sing N N 60 ASN CB HB2 sing N N 61 ASN CB HB3 sing N N 62 ASN CG OD1 doub N N 63 ASN CG ND2 sing N N 64 ASN ND2 HD21 sing N N 65 ASN ND2 HD22 sing N N 66 ASN OXT HXT sing N N 67 C OP3 P sing N N 68 C OP3 HOP3 sing N N 69 C P OP1 doub N N 70 C P OP2 sing N N 71 C P "O5'" sing N N 72 C OP2 HOP2 sing N N 73 C "O5'" "C5'" sing N N 74 C "C5'" "C4'" sing N N 75 C "C5'" "H5'" sing N N 76 C "C5'" "H5''" sing N N 77 C "C4'" "O4'" sing N N 78 C "C4'" "C3'" sing N N 79 C "C4'" "H4'" sing N N 80 C "O4'" "C1'" sing N N 81 C "C3'" "O3'" sing N N 82 C "C3'" "C2'" sing N N 83 C "C3'" "H3'" sing N N 84 C "O3'" "HO3'" sing N N 85 C "C2'" "O2'" sing N N 86 C "C2'" "C1'" sing N N 87 C "C2'" "H2'" sing N N 88 C "O2'" "HO2'" sing N N 89 C "C1'" N1 sing N N 90 C "C1'" "H1'" sing N N 91 C N1 C2 sing N N 92 C N1 C6 sing N N 93 C C2 O2 doub N N 94 C C2 N3 sing N N 95 C N3 C4 doub N N 96 C C4 N4 sing N N 97 C C4 C5 sing N N 98 C N4 H41 sing N N 99 C N4 H42 sing N N 100 C C5 C6 doub N N 101 C C5 H5 sing N N 102 C C6 H6 sing N N 103 G OP3 P sing N N 104 G OP3 HOP3 sing N N 105 G P OP1 doub N N 106 G P OP2 sing N N 107 G P "O5'" sing N N 108 G OP2 HOP2 sing N N 109 G "O5'" "C5'" sing N N 110 G "C5'" "C4'" sing N N 111 G "C5'" "H5'" sing N N 112 G "C5'" "H5''" sing N N 113 G "C4'" "O4'" sing N N 114 G "C4'" "C3'" sing N N 115 G "C4'" "H4'" sing N N 116 G "O4'" "C1'" sing N N 117 G "C3'" "O3'" sing N N 118 G "C3'" "C2'" sing N N 119 G "C3'" "H3'" sing N N 120 G "O3'" "HO3'" sing N N 121 G "C2'" "O2'" sing N N 122 G "C2'" "C1'" sing N N 123 G "C2'" "H2'" sing N N 124 G "O2'" "HO2'" sing N N 125 G "C1'" N9 sing N N 126 G "C1'" "H1'" sing N N 127 G N9 C8 sing Y N 128 G N9 C4 sing Y N 129 G C8 N7 doub Y N 130 G C8 H8 sing N N 131 G N7 C5 sing Y N 132 G C5 C6 sing N N 133 G C5 C4 doub Y N 134 G C6 O6 doub N N 135 G C6 N1 sing N N 136 G N1 C2 sing N N 137 G N1 H1 sing N N 138 G C2 N2 sing N N 139 G C2 N3 doub N N 140 G N2 H21 sing N N 141 G N2 H22 sing N N 142 G N3 C4 sing N N 143 GLN N CA sing N N 144 GLN N H sing N N 145 GLN N H2 sing N N 146 GLN CA C sing N N 147 GLN CA CB sing N N 148 GLN CA HA sing N N 149 GLN C O doub N N 150 GLN C OXT sing N N 151 GLN CB CG sing N N 152 GLN CB HB2 sing N N 153 GLN CB HB3 sing N N 154 GLN CG CD sing N N 155 GLN CG HG2 sing N N 156 GLN CG HG3 sing N N 157 GLN CD OE1 doub N N 158 GLN CD NE2 sing N N 159 GLN NE2 HE21 sing N N 160 GLN NE2 HE22 sing N N 161 GLN OXT HXT sing N N 162 ILE N CA sing N N 163 ILE N H sing N N 164 ILE N H2 sing N N 165 ILE CA C sing N N 166 ILE CA CB sing N N 167 ILE CA HA sing N N 168 ILE C O doub N N 169 ILE C OXT sing N N 170 ILE CB CG1 sing N N 171 ILE CB CG2 sing N N 172 ILE CB HB sing N N 173 ILE CG1 CD1 sing N N 174 ILE CG1 HG12 sing N N 175 ILE CG1 HG13 sing N N 176 ILE CG2 HG21 sing N N 177 ILE CG2 HG22 sing N N 178 ILE CG2 HG23 sing N N 179 ILE CD1 HD11 sing N N 180 ILE CD1 HD12 sing N N 181 ILE CD1 HD13 sing N N 182 ILE OXT HXT sing N N 183 NH2 N HN1 sing N N 184 NH2 N HN2 sing N N 185 U OP3 P sing N N 186 U OP3 HOP3 sing N N 187 U P OP1 doub N N 188 U P OP2 sing N N 189 U P "O5'" sing N N 190 U OP2 HOP2 sing N N 191 U "O5'" "C5'" sing N N 192 U "C5'" "C4'" sing N N 193 U "C5'" "H5'" sing N N 194 U "C5'" "H5''" sing N N 195 U "C4'" "O4'" sing N N 196 U "C4'" "C3'" sing N N 197 U "C4'" "H4'" sing N N 198 U "O4'" "C1'" sing N N 199 U "C3'" "O3'" sing N N 200 U "C3'" "C2'" sing N N 201 U "C3'" "H3'" sing N N 202 U "O3'" "HO3'" sing N N 203 U "C2'" "O2'" sing N N 204 U "C2'" "C1'" sing N N 205 U "C2'" "H2'" sing N N 206 U "O2'" "HO2'" sing N N 207 U "C1'" N1 sing N N 208 U "C1'" "H1'" sing N N 209 U N1 C2 sing N N 210 U N1 C6 sing N N 211 U C2 O2 doub N N 212 U C2 N3 sing N N 213 U N3 C4 sing N N 214 U N3 H3 sing N N 215 U C4 O4 doub N N 216 U C4 C5 sing N N 217 U C5 C6 doub N N 218 U C5 H5 sing N N 219 U C6 H6 sing N N 220 VAL N CA sing N N 221 VAL N H sing N N 222 VAL N H2 sing N N 223 VAL CA C sing N N 224 VAL CA CB sing N N 225 VAL CA HA sing N N 226 VAL C O doub N N 227 VAL C OXT sing N N 228 VAL CB CG1 sing N N 229 VAL CB CG2 sing N N 230 VAL CB HB sing N N 231 VAL CG1 HG11 sing N N 232 VAL CG1 HG12 sing N N 233 VAL CG1 HG13 sing N N 234 VAL CG2 HG21 sing N N 235 VAL CG2 HG22 sing N N 236 VAL CG2 HG23 sing N N 237 VAL OXT HXT sing N N 238 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' #