HEADER SPLICING 24-JUL-23 8PXW TITLE STRUCTURE OF THE WW DOMAIN TANDEM OF PRPF40A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-PROCESSING FACTOR 40 HOMOLOG A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAS LIGAND-ASSOCIATED FACTOR 1,FORMIN-BINDING PROTEIN 11, COMPND 5 FORMIN-BINDING PROTEIN 3,HUNTINGTIN YEAST PARTNER A,HUNTINGTIN- COMPND 6 INTERACTING PROTEIN 10,HIP-10,HUNTINGTIN-INTERACTING PROTEIN A,RENAL COMPND 7 CARCINOMA ANTIGEN NY-REN-6; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRPF40A, FBP11, FLAF1, FNBP3, HIP10, HYPA, HSPC225; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DYNAMIC WW DOMAIN TANDEM, PROLINE BINDING DOMAIN, ALTERNATIVE KEYWDS 2 SPLICING REGULATION, E COMPLEX, SPLICING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.MARTINEZ-LUMBRERAS,M.SATTLER REVDAT 2 22-MAY-24 8PXW 1 JRNL REVDAT 1 03-APR-24 8PXW 0 JRNL AUTH S.MARTINEZ-LUMBRERAS,L.K.TRAGER,M.M.MULORZ,M.PAYR,V.DIKAYA, JRNL AUTH 2 C.HIPP,J.KONIG,M.SATTLER JRNL TITL INTRAMOLECULAR AUTOINHIBITION REGULATES THE SELECTIVITY OF JRNL TITL 2 PRPF40A TANDEM WW DOMAINS FOR PROLINE-RICH MOTIFS. JRNL REF NAT COMMUN V. 15 3888 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38719828 JRNL DOI 10.1038/S41467-024-48004-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292131936. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 133 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 390 UM [U-100% 13C; U-100% 15N] REMARK 210 PRPF40A, 90% H2O/10% D2O; 390 UM REMARK 210 [U-100% 13C; U-100% 15N] PRPF40A, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D H(CCO)NH; 3D 1H-15N NOESY; 2D REMARK 210 1H-13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 2D HBCBCGCDHD; 2D REMARK 210 HBCBCGCDCEHE; 3D HCCH-TOCSY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, CCPNMR REMARK 210 ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 143 HG SER A 144 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 139 28.56 -148.21 REMARK 500 1 SER A 144 -48.95 68.21 REMARK 500 1 SER A 229 85.74 61.79 REMARK 500 2 VAL A 226 -166.90 -109.60 REMARK 500 2 ALA A 227 82.54 59.15 REMARK 500 2 LYS A 233 86.18 -159.77 REMARK 500 2 SER A 234 18.34 -156.63 REMARK 500 3 ALA A 139 51.64 -100.46 REMARK 500 3 ILE A 225 -60.66 -101.20 REMARK 500 3 SER A 234 -100.18 52.09 REMARK 500 3 ASN A 235 -62.12 -148.54 REMARK 500 4 MET A 140 44.38 -105.63 REMARK 500 4 VAL A 226 -0.32 77.98 REMARK 500 4 SER A 229 34.22 -157.23 REMARK 500 4 LYS A 233 -70.01 69.58 REMARK 500 4 SER A 234 -55.65 176.95 REMARK 500 4 ASN A 235 116.55 -161.13 REMARK 500 5 LYS A 143 96.30 -64.73 REMARK 500 5 LYS A 233 176.00 62.92 REMARK 500 5 SER A 234 39.33 -92.90 REMARK 500 5 ASN A 235 49.90 -153.05 REMARK 500 6 ALA A 227 62.75 -117.90 REMARK 500 6 ASN A 235 95.05 63.02 REMARK 500 7 SER A 144 -83.79 63.64 REMARK 500 7 ILE A 231 41.84 -80.48 REMARK 500 7 THR A 232 132.82 178.42 REMARK 500 7 SER A 234 10.69 -146.35 REMARK 500 7 ASN A 235 -65.06 -132.78 REMARK 500 8 ALA A 227 83.88 55.27 REMARK 500 8 LEU A 230 -62.37 67.15 REMARK 500 8 LYS A 233 115.84 -163.21 REMARK 500 8 ASN A 235 -24.73 74.12 REMARK 500 9 LEU A 230 139.28 71.08 REMARK 500 9 SER A 234 15.80 -141.18 REMARK 500 10 LYS A 233 -56.76 -132.34 REMARK 500 10 SER A 234 -80.74 179.98 REMARK 500 11 ALA A 227 35.35 -149.99 REMARK 500 11 SER A 229 126.40 68.75 REMARK 500 11 SER A 234 -42.94 -159.37 REMARK 500 12 MET A 140 48.46 -88.60 REMARK 500 12 THR A 224 30.18 -89.87 REMARK 500 12 SER A 234 -66.79 67.96 REMARK 500 13 SER A 144 -167.02 -168.00 REMARK 500 13 ALA A 227 75.81 -119.15 REMARK 500 13 SER A 234 19.46 -149.69 REMARK 500 13 ASN A 235 -49.29 -170.72 REMARK 500 14 MET A 140 35.03 -95.43 REMARK 500 14 LYS A 233 -73.87 72.38 REMARK 500 14 SER A 234 -170.17 166.26 REMARK 500 15 MET A 140 47.66 -97.32 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDSK7 RELATED DB: SASBDB REMARK 900 RELATED ID: 34839 RELATED DB: BMRB REMARK 900 STRUCTURE OF THE WW DOMAIN TANDEM OF PRPF40A DBREF 8PXW A 141 236 UNP O75400 PR40A_HUMAN 141 236 SEQADV 8PXW GLY A 138 UNP O75400 EXPRESSION TAG SEQADV 8PXW ALA A 139 UNP O75400 EXPRESSION TAG SEQADV 8PXW MET A 140 UNP O75400 EXPRESSION TAG SEQRES 1 A 99 GLY ALA MET GLY ALA LYS SER MET TRP THR GLU HIS LYS SEQRES 2 A 99 SER PRO ASP GLY ARG THR TYR TYR TYR ASN THR GLU THR SEQRES 3 A 99 LYS GLN SER THR TRP GLU LYS PRO ASP ASP LEU LYS THR SEQRES 4 A 99 PRO ALA GLU GLN LEU LEU SER LYS CYS PRO TRP LYS GLU SEQRES 5 A 99 TYR LYS SER ASP SER GLY LYS PRO TYR TYR TYR ASN SER SEQRES 6 A 99 GLN THR LYS GLU SER ARG TRP ALA LYS PRO LYS GLU LEU SEQRES 7 A 99 GLU ASP LEU GLU GLY TYR GLN ASN THR ILE VAL ALA GLY SEQRES 8 A 99 SER LEU ILE THR LYS SER ASN LEU HELIX 1 AA1 PRO A 171 LYS A 175 5 5 HELIX 2 AA2 THR A 176 CYS A 185 1 10 HELIX 3 AA3 PRO A 212 VAL A 226 1 15 HELIX 4 AA4 ALA A 227 GLY A 228 5 2 HELIX 5 AA5 SER A 229 LYS A 233 5 5 SHEET 1 AA1 3 TRP A 146 LYS A 150 0 SHEET 2 AA1 3 THR A 156 ASN A 160 -1 O TYR A 159 N THR A 147 SHEET 3 AA1 3 SER A 166 THR A 167 -1 O THR A 167 N TYR A 158 SHEET 1 AA2 3 TRP A 187 LYS A 191 0 SHEET 2 AA2 3 PRO A 197 ASN A 201 -1 O TYR A 200 N LYS A 188 SHEET 3 AA2 3 SER A 207 ARG A 208 -1 O ARG A 208 N TYR A 199 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1