HEADER OXIDOREDUCTASE 25-JUL-23 8PY6 TITLE ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE AND ACDV UNDER ANAEROBIC TITLE 2 CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA, IPS, AN2622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, PENICILLINS, BIOSYNTHESIS, 2OG OXYGENASES, KEYWDS 2 ANTIBIOTIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,C.J.SCHOFIELD REVDAT 1 07-AUG-24 8PY6 0 JRNL AUTH P.RABE,C.J.SCHOFIELD JRNL TITL ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE AND ACDV UNDER JRNL TITL 2 ANAEROBIC CONDITIONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.5800 - 3.6600 1.00 3661 151 0.1274 0.1325 REMARK 3 2 3.6600 - 2.9100 1.00 3501 145 0.1344 0.1365 REMARK 3 3 2.9100 - 2.5400 1.00 3472 144 0.1522 0.1814 REMARK 3 4 2.5400 - 2.3100 1.00 3438 143 0.1449 0.1774 REMARK 3 5 2.3100 - 2.1400 1.00 3454 144 0.1377 0.1738 REMARK 3 6 2.1400 - 2.0200 1.00 3426 142 0.1419 0.1496 REMARK 3 7 2.0200 - 1.9100 1.00 3414 142 0.1587 0.2049 REMARK 3 8 1.9100 - 1.8300 1.00 3403 141 0.1697 0.2052 REMARK 3 9 1.8300 - 1.7600 1.00 3383 141 0.1849 0.2228 REMARK 3 10 1.7600 - 1.7000 1.00 3412 142 0.1995 0.2099 REMARK 3 11 1.7000 - 1.6500 1.00 3373 140 0.2246 0.2305 REMARK 3 12 1.6500 - 1.6000 1.00 3381 141 0.2651 0.2717 REMARK 3 13 1.6000 - 1.5600 1.00 3434 143 0.3180 0.3290 REMARK 3 14 1.5600 - 1.5200 1.00 3351 137 0.3614 0.3620 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.193 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.041 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2774 REMARK 3 ANGLE : 0.738 3800 REMARK 3 CHIRALITY : 0.049 400 REMARK 3 PLANARITY : 0.006 509 REMARK 3 DIHEDRAL : 12.050 997 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.2372 78.2209 -15.7049 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: 0.1503 REMARK 3 T33: 0.1212 T12: 0.0168 REMARK 3 T13: -0.0223 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 3.3559 L22: 4.6276 REMARK 3 L33: 5.5895 L12: -0.0760 REMARK 3 L13: -0.6108 L23: 2.4518 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: 0.2099 S13: -0.1232 REMARK 3 S21: -0.1472 S22: -0.0612 S23: 0.0753 REMARK 3 S31: 0.0512 S32: -0.2011 S33: 0.0627 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4628 74.7668 3.2417 REMARK 3 T TENSOR REMARK 3 T11: 0.1604 T22: 0.2154 REMARK 3 T33: 0.1881 T12: 0.0070 REMARK 3 T13: 0.0193 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.4529 L22: 0.7868 REMARK 3 L33: 4.1654 L12: -0.0921 REMARK 3 L13: 1.1621 L23: -0.4562 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: -0.1410 S13: -0.0555 REMARK 3 S21: 0.1080 S22: 0.1548 S23: 0.1688 REMARK 3 S31: 0.2724 S32: -0.6549 S33: -0.2490 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1392 68.9594 24.3668 REMARK 3 T TENSOR REMARK 3 T11: 0.2396 T22: 0.2186 REMARK 3 T33: 0.1308 T12: 0.0112 REMARK 3 T13: 0.0006 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 5.5922 L22: 5.6393 REMARK 3 L33: 3.9383 L12: -0.4581 REMARK 3 L13: 1.0292 L23: 1.1764 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: -0.2221 S13: -0.2397 REMARK 3 S21: 0.1166 S22: 0.0457 S23: 0.0711 REMARK 3 S31: 0.3148 S32: -0.1807 S33: -0.0568 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.8221 68.8135 14.9464 REMARK 3 T TENSOR REMARK 3 T11: 0.2259 T22: 0.1862 REMARK 3 T33: 0.1419 T12: 0.0061 REMARK 3 T13: -0.0265 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 2.0109 L22: 5.6016 REMARK 3 L33: 2.4150 L12: -1.1923 REMARK 3 L13: -0.4625 L23: 1.1073 REMARK 3 S TENSOR REMARK 3 S11: -0.0836 S12: -0.2499 S13: -0.0977 REMARK 3 S21: 0.3325 S22: 0.1196 S23: -0.0243 REMARK 3 S31: 0.4446 S32: 0.1458 S33: -0.0930 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.8286 60.1506 13.0975 REMARK 3 T TENSOR REMARK 3 T11: 0.3881 T22: 0.1825 REMARK 3 T33: 0.1663 T12: -0.0135 REMARK 3 T13: -0.0429 T23: 0.0696 REMARK 3 L TENSOR REMARK 3 L11: 5.7228 L22: 2.4176 REMARK 3 L33: 2.0828 L12: -0.9325 REMARK 3 L13: -0.4979 L23: 0.3712 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.5298 S13: -0.4436 REMARK 3 S21: 0.0692 S22: 0.0513 S23: -0.0464 REMARK 3 S31: 0.8284 S32: 0.0912 S33: 0.0518 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1726 66.5191 -2.6537 REMARK 3 T TENSOR REMARK 3 T11: 0.2238 T22: 0.1595 REMARK 3 T33: 0.1695 T12: -0.0231 REMARK 3 T13: -0.0312 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.8691 L22: 3.0292 REMARK 3 L33: 4.2433 L12: 1.9032 REMARK 3 L13: -3.0213 L23: -3.2492 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.0322 S13: -0.1687 REMARK 3 S21: -0.0276 S22: -0.0025 S23: 0.0462 REMARK 3 S31: 0.5013 S32: -0.1066 S33: 0.0110 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6641 65.5306 -9.1556 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.1966 REMARK 3 T33: 0.2078 T12: 0.0677 REMARK 3 T13: -0.0183 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 0.5167 L22: 2.5187 REMARK 3 L33: 4.2811 L12: 0.0801 REMARK 3 L13: -0.4783 L23: -3.0870 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: 0.0866 S13: -0.1289 REMARK 3 S21: -0.3261 S22: -0.0922 S23: -0.1166 REMARK 3 S31: 0.8588 S32: 0.5172 S33: 0.1087 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.5609 82.9070 3.2290 REMARK 3 T TENSOR REMARK 3 T11: 0.0940 T22: 0.1099 REMARK 3 T33: 0.1296 T12: 0.0049 REMARK 3 T13: -0.0142 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.2984 L22: 1.1805 REMARK 3 L33: 2.2304 L12: 0.0155 REMARK 3 L13: -0.3966 L23: -0.0772 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.0190 S13: 0.0821 REMARK 3 S21: 0.0794 S22: 0.0076 S23: 0.0259 REMARK 3 S31: -0.0209 S32: 0.0892 S33: -0.0409 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.2953 77.3598 -14.1400 REMARK 3 T TENSOR REMARK 3 T11: 0.2300 T22: 0.5548 REMARK 3 T33: 0.2647 T12: 0.0455 REMARK 3 T13: 0.0433 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 3.9699 L22: 3.6061 REMARK 3 L33: 3.8704 L12: -2.1697 REMARK 3 L13: 3.7606 L23: -2.2641 REMARK 3 S TENSOR REMARK 3 S11: 0.1483 S12: 0.5557 S13: 0.2135 REMARK 3 S21: -0.2420 S22: -0.2659 S23: -0.2556 REMARK 3 S31: -0.0851 S32: 1.6894 S33: 0.1495 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.1098 76.6884 8.4806 REMARK 3 T TENSOR REMARK 3 T11: 0.2526 T22: 0.3144 REMARK 3 T33: 0.2459 T12: 0.0081 REMARK 3 T13: -0.0305 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 2.4940 L22: 6.8731 REMARK 3 L33: 4.7443 L12: -2.7065 REMARK 3 L13: -2.6659 L23: 5.6092 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: -0.2193 S13: 0.1306 REMARK 3 S21: 0.2044 S22: 0.2108 S23: -0.2564 REMARK 3 S31: -0.1081 S32: 0.5185 S33: -0.1674 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292128610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.300289 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CCTBX.XFEL.MERGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 22.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 88.16 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4650 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.96 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, 3 UM X 3 UM X 60-80 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH 8.5, BATCH REMARK 280 MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.77600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.84450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.79650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.84450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.77600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.79650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 4 CG1 CG2 REMARK 470 ARG A 53 CD NE CZ NH1 NH2 REMARK 470 LYS A 57 CE NZ REMARK 470 LYS A 59 NZ REMARK 470 ARG A 76 CZ NH1 NH2 REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 GLN A 144 CD OE1 NE2 REMARK 470 ASN A 169 ND2 REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ARG A 308 NH1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -105.53 -101.21 REMARK 500 HIS A 82 62.11 -104.75 REMARK 500 LYS A 97 -43.44 -135.80 REMARK 500 THR A 123 -4.20 73.42 REMARK 500 ASN A 230 -27.93 -153.02 REMARK 500 LEU A 288 -157.44 -88.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 102.3 REMARK 620 3 HIS A 270 NE2 86.3 91.0 REMARK 620 4 ACV A 404 S17 94.7 90.5 178.0 REMARK 620 5 HOH A 652 O 154.8 102.0 86.8 91.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZAE RELATED DB: PDB DBREF 8PY6 A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET SO4 A 402 5 HET FE A 403 1 HET ACV A 404 24 HETNAM SO4 SULFATE ION HETNAM FE FE (III) ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 FE FE 3+ FORMUL 5 ACV C14 H25 N3 O6 S FORMUL 6 HOH *206(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N LEU A 223 O LEU A 250 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE A 403 1555 1555 2.15 LINK OD1 ASP A 216 FE FE A 403 1555 1555 2.01 LINK NE2 HIS A 270 FE FE A 403 1555 1555 2.23 LINK FE FE A 403 S17 ACV A 404 1555 1555 2.35 LINK FE FE A 403 O HOH A 652 1555 1555 2.10 CISPEP 1 ASP A 193 PRO A 194 0 -0.21 CRYST1 41.552 75.593 101.689 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024066 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009834 0.00000