HEADER OXIDOREDUCTASE 25-JUL-23 8PY7 TITLE ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE, ACDV AND O2 AFTER 1S O2 TITLE 2 EXPOSURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA, IPS, AN2622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, PENICILLINS, BIOSYNTHESIS, 2OG OXYGENASES, KEYWDS 2 ANTIBIOTIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,C.J.SCHOFIELD REVDAT 1 07-AUG-24 8PY7 0 JRNL AUTH P.RABE,C.J.SCHOFIELD JRNL TITL ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE, ACDV AND O2 JRNL TITL 2 AFTER 1S O2 EXPOSURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.750 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.5300 - 3.5900 1.00 3897 153 0.1215 0.1370 REMARK 3 2 3.5900 - 2.8500 1.00 3755 145 0.1329 0.1692 REMARK 3 3 2.8500 - 2.4900 1.00 3691 144 0.1464 0.1746 REMARK 3 4 2.4900 - 2.2600 1.00 3669 143 0.1392 0.1661 REMARK 3 5 2.2600 - 2.1000 1.00 3663 144 0.1257 0.1530 REMARK 3 6 2.1000 - 1.9800 1.00 3646 142 0.1321 0.1829 REMARK 3 7 1.9800 - 1.8800 1.00 3637 142 0.1494 0.1984 REMARK 3 8 1.8800 - 1.8000 1.00 3646 142 0.1587 0.2271 REMARK 3 9 1.8000 - 1.7300 1.00 3622 141 0.1685 0.2190 REMARK 3 10 1.7300 - 1.6700 1.00 3597 140 0.1935 0.2201 REMARK 3 11 1.6700 - 1.6100 1.00 3628 142 0.2254 0.2602 REMARK 3 12 1.6100 - 1.5700 1.00 3613 141 0.2670 0.2878 REMARK 3 13 1.5700 - 1.5300 1.00 3631 142 0.3127 0.3843 REMARK 3 14 1.5300 - 1.4900 0.99 3550 138 0.3795 0.4045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.212 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.924 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2806 REMARK 3 ANGLE : 0.989 3842 REMARK 3 CHIRALITY : 0.080 401 REMARK 3 PLANARITY : 0.008 514 REMARK 3 DIHEDRAL : 12.128 1013 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6060 -3.9565 15.1743 REMARK 3 T TENSOR REMARK 3 T11: 0.1002 T22: 0.1394 REMARK 3 T33: 0.1002 T12: -0.0273 REMARK 3 T13: 0.0271 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 2.9309 L22: 6.3907 REMARK 3 L33: 6.1162 L12: -0.6728 REMARK 3 L13: 0.3739 L23: 3.5824 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: -0.1967 S13: 0.0218 REMARK 3 S21: 0.2187 S22: -0.0708 S23: 0.0745 REMARK 3 S31: 0.0583 S32: -0.1927 S33: 0.0468 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5997 0.6425 -2.4634 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.1767 REMARK 3 T33: 0.1709 T12: -0.0359 REMARK 3 T13: -0.0276 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.1482 L22: 1.2089 REMARK 3 L33: 6.2289 L12: -0.3620 REMARK 3 L13: -0.5890 L23: -1.1690 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: 0.1221 S13: 0.0578 REMARK 3 S21: -0.0965 S22: 0.1774 S23: 0.2082 REMARK 3 S31: -0.2793 S32: -0.7326 S33: -0.2399 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2471 6.5871 -24.4013 REMARK 3 T TENSOR REMARK 3 T11: 0.2640 T22: 0.2130 REMARK 3 T33: 0.1387 T12: -0.0094 REMARK 3 T13: -0.0008 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 2.0590 L22: 6.6450 REMARK 3 L33: 5.9257 L12: 0.7323 REMARK 3 L13: -0.1239 L23: 3.7222 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.0912 S13: 0.0933 REMARK 3 S21: -0.2043 S22: 0.0349 S23: 0.0721 REMARK 3 S31: -0.4494 S32: -0.1170 S33: -0.0194 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0068 6.3311 -15.2518 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.1598 REMARK 3 T33: 0.1180 T12: -0.0007 REMARK 3 T13: 0.0139 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.9178 L22: 6.9765 REMARK 3 L33: 2.4185 L12: 1.6589 REMARK 3 L13: 0.4924 L23: 1.2763 REMARK 3 S TENSOR REMARK 3 S11: -0.1332 S12: 0.2252 S13: 0.0542 REMARK 3 S21: -0.3885 S22: 0.1595 S23: -0.0695 REMARK 3 S31: -0.4416 S32: 0.1650 S33: -0.0485 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5261 15.3924 -13.1242 REMARK 3 T TENSOR REMARK 3 T11: 0.4170 T22: 0.1850 REMARK 3 T33: 0.1575 T12: -0.0057 REMARK 3 T13: 0.0305 T23: 0.0691 REMARK 3 L TENSOR REMARK 3 L11: 7.1868 L22: 2.6852 REMARK 3 L33: 2.3355 L12: 1.7227 REMARK 3 L13: 0.8552 L23: 0.5852 REMARK 3 S TENSOR REMARK 3 S11: -0.0941 S12: 0.6090 S13: 0.3657 REMARK 3 S21: -0.0920 S22: 0.1104 S23: 0.0471 REMARK 3 S31: -0.9215 S32: 0.0880 S33: 0.0366 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1579 9.0432 2.8524 REMARK 3 T TENSOR REMARK 3 T11: 0.2119 T22: 0.1158 REMARK 3 T33: 0.1419 T12: 0.0171 REMARK 3 T13: 0.0343 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 3.7176 L22: 4.3371 REMARK 3 L33: 7.7279 L12: -2.8351 REMARK 3 L13: 3.9462 L23: -4.6028 REMARK 3 S TENSOR REMARK 3 S11: 0.0942 S12: -0.0595 S13: 0.1066 REMARK 3 S21: -0.1347 S22: -0.0223 S23: 0.0780 REMARK 3 S31: -0.3207 S32: -0.2302 S33: -0.0756 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9902 10.4655 8.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.2799 T22: 0.1893 REMARK 3 T33: 0.1956 T12: -0.0602 REMARK 3 T13: 0.0171 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 1.1503 L22: 3.3960 REMARK 3 L33: 3.9226 L12: -0.7312 REMARK 3 L13: 1.1932 L23: -3.5438 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: -0.1600 S13: 0.1561 REMARK 3 S21: 0.4814 S22: 0.0432 S23: -0.1398 REMARK 3 S31: -1.2287 S32: 0.3644 S33: 0.0813 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4833 -8.8035 -3.8881 REMARK 3 T TENSOR REMARK 3 T11: 0.1277 T22: 0.1243 REMARK 3 T33: 0.1443 T12: -0.0110 REMARK 3 T13: 0.0117 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.3718 L22: 1.1887 REMARK 3 L33: 2.5941 L12: -0.1572 REMARK 3 L13: 0.4526 L23: 0.1879 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: 0.0335 S13: -0.1189 REMARK 3 S21: -0.0899 S22: 0.0097 S23: 0.0519 REMARK 3 S31: 0.0759 S32: 0.0159 S33: -0.0531 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6540 2.5482 10.1233 REMARK 3 T TENSOR REMARK 3 T11: 0.2707 T22: 0.4491 REMARK 3 T33: 0.2193 T12: -0.0875 REMARK 3 T13: -0.0369 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.9667 L22: 3.1045 REMARK 3 L33: 4.2107 L12: 0.9414 REMARK 3 L13: -1.0734 L23: -2.2651 REMARK 3 S TENSOR REMARK 3 S11: 0.0793 S12: -0.2234 S13: -0.1202 REMARK 3 S21: 0.3857 S22: -0.3053 S23: -0.3213 REMARK 3 S31: -0.3347 S32: 1.3226 S33: 0.2554 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7375 -1.1091 -8.4974 REMARK 3 T TENSOR REMARK 3 T11: 0.2872 T22: 0.3386 REMARK 3 T33: 0.2478 T12: -0.0149 REMARK 3 T13: 0.0302 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 4.7038 L22: 5.5639 REMARK 3 L33: 9.4367 L12: 4.2580 REMARK 3 L13: 5.1412 L23: 7.1669 REMARK 3 S TENSOR REMARK 3 S11: -0.1463 S12: 0.3490 S13: -0.1264 REMARK 3 S21: -0.4539 S22: 0.2639 S23: -0.1686 REMARK 3 S31: -0.0011 S32: 0.5860 S33: -0.1717 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292129013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.300289 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CCTBX.XFEL.MERGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 22.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 186.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3790 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.31 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.581 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, 3 UM X 3UM X 60-80 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH 8.5, BATCH REMARK 280 MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.87900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.88200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.68800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.88200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.87900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.68800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 3 CB OG REMARK 470 VAL A 4 CG2 REMARK 470 ASP A 20 OD1 OD2 REMARK 470 ARG A 53 CZ NH1 NH2 REMARK 470 LYS A 57 CE NZ REMARK 470 LYS A 59 CE NZ REMARK 470 ARG A 76 CZ NH1 NH2 REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ASP A 307 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 101 O HOH A 501 2.08 REMARK 500 OH TYR A 224 O HOH A 502 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 260 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -107.30 -99.24 REMARK 500 ASP A 38 -107.30 -103.04 REMARK 500 HIS A 82 61.79 -102.28 REMARK 500 LYS A 97 -42.06 -137.33 REMARK 500 THR A 123 -5.91 76.21 REMARK 500 ASN A 230 -25.39 -152.03 REMARK 500 LEU A 288 -156.65 -88.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 405 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 99.0 REMARK 620 3 HIS A 270 NE2 86.5 89.9 REMARK 620 4 ACV A 403 S17 95.2 89.2 178.3 REMARK 620 5 OXY A 404 O2 84.5 176.5 89.7 91.0 REMARK 620 6 HOH A 558 O 164.8 94.3 86.3 92.3 82.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZAE RELATED DB: PDB REMARK 900 RELATED ID: 6ZAI RELATED DB: PDB DBREF 8PY7 A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET SO4 A 402 5 HET ACV A 403 32 HET OXY A 404 2 HET FE A 405 1 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM OXY OXYGEN MOLECULE HETNAM FE FE (III) ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 ACV C14 H25 N3 O6 S FORMUL 5 OXY O2 FORMUL 6 FE FE 3+ FORMUL 7 HOH *207(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N THR A 221 O ASN A 252 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE A 405 1555 1555 2.17 LINK OD1 ASP A 216 FE FE A 405 1555 1555 2.04 LINK NE2 HIS A 270 FE FE A 405 1555 1555 2.18 LINK S17 ACV A 403 FE FE A 405 1555 1555 2.31 LINK O2 BOXY A 404 FE FE A 405 1555 1555 2.02 LINK FE FE A 405 O HOH A 558 1555 1555 2.14 CISPEP 1 ASP A 193 PRO A 194 0 -1.55 CRYST1 41.758 75.376 101.764 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023948 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009827 0.00000