HEADER TRANSCRIPTION 27-JUL-23 8PZ6 TITLE CRYSTAL STRUCTURE OF VDR IN COMPLEX WITH D-BISHOMO-1A,25- TITLE 2 DIHYDROXYVITAMIN D3 ANALOG 56 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D3 RECEPTOR A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDR-A,1,25-DIHYDROXYVITAMIN D3 RECEPTOR A,NUCLEAR RECEPTOR COMPND 5 SUBFAMILY 1 GROUP I MEMBER 1-A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 11 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: VDRA, NR1I1A, VDR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, VDR, AGONIST, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ROCHEL REVDAT 2 22-MAY-24 8PZ6 1 REMARK REVDAT 1 24-APR-24 8PZ6 0 JRNL AUTH A.FABISIAK,P.BRZEMINSKI,R.R.SICINSKI,N.ROCHEL,E.MAJ, JRNL AUTH 2 B.FILIP-PSURSKA,J.WIETRZYK,L.A.PLUM,H.F.DELUCA JRNL TITL DESIGN, SYNTHESIS, AND BIOLOGICAL ACTIVITY OF D-BISHOMO-1 JRNL TITL 2 ALPHA ,25-DIHYDROXYVITAMIN D 3 ANALOGS AND THEIR CRYSTAL JRNL TITL 3 STRUCTURES WITH THE VITAMIN D NUCLEAR RECEPTOR. JRNL REF EUR.J.MED.CHEM. V. 271 16403 2024 JRNL REFN ISSN 0223-5234 JRNL PMID 38615411 JRNL DOI 10.1016/J.EJMECH.2024.116403 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 8052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.0700 - 5.2400 1.00 1363 127 0.2004 0.2916 REMARK 3 2 5.2400 - 4.1700 0.99 1196 155 0.1718 0.2192 REMARK 3 3 4.1700 - 3.6500 0.98 1195 131 0.1993 0.2555 REMARK 3 4 3.6500 - 3.3200 0.99 1159 142 0.2392 0.3615 REMARK 3 5 3.3200 - 3.0800 0.98 1181 125 0.3198 0.4157 REMARK 3 6 3.0800 - 2.9000 0.98 1157 121 0.3844 0.4943 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.620 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : 1.078 NULL REMARK 3 CHIRALITY : 0.058 317 REMARK 3 PLANARITY : 0.008 357 REMARK 3 DIHEDRAL : 16.973 812 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.3447 34.9901 1.0803 REMARK 3 T TENSOR REMARK 3 T11: 1.2655 T22: 1.5107 REMARK 3 T33: 0.6555 T12: -0.0313 REMARK 3 T13: 0.0826 T23: -0.0727 REMARK 3 L TENSOR REMARK 3 L11: 8.3372 L22: 8.2483 REMARK 3 L33: 5.4827 L12: 0.1671 REMARK 3 L13: 1.3085 L23: 5.6491 REMARK 3 S TENSOR REMARK 3 S11: -0.1543 S12: 0.5051 S13: 1.0370 REMARK 3 S21: 0.1116 S22: -0.7130 S23: 0.9988 REMARK 3 S31: -0.5342 S32: -0.8443 S33: 0.8734 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.0201 12.4568 -16.6404 REMARK 3 T TENSOR REMARK 3 T11: 1.3996 T22: 1.3839 REMARK 3 T33: 0.6144 T12: -0.0508 REMARK 3 T13: -0.0646 T23: -0.1175 REMARK 3 L TENSOR REMARK 3 L11: 7.7562 L22: 4.9341 REMARK 3 L33: 4.1313 L12: -0.8494 REMARK 3 L13: 3.6892 L23: -2.4869 REMARK 3 S TENSOR REMARK 3 S11: 0.7219 S12: 0.8711 S13: -0.8338 REMARK 3 S21: 0.1929 S22: -0.8114 S23: 0.9933 REMARK 3 S31: 0.7537 S32: 1.2396 S33: 0.0033 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3378 31.4253 -8.3003 REMARK 3 T TENSOR REMARK 3 T11: 1.0862 T22: 1.2872 REMARK 3 T33: 0.6135 T12: 0.0063 REMARK 3 T13: -0.0070 T23: -0.1228 REMARK 3 L TENSOR REMARK 3 L11: 2.2850 L22: 2.8122 REMARK 3 L33: 7.5986 L12: -0.4355 REMARK 3 L13: -2.1765 L23: -1.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: -0.2780 S13: 0.2783 REMARK 3 S21: -0.8067 S22: 0.1409 S23: 1.0097 REMARK 3 S31: -1.3096 S32: -0.1889 S33: -0.2002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5718 23.7252 -2.1007 REMARK 3 T TENSOR REMARK 3 T11: 1.2021 T22: 1.2517 REMARK 3 T33: 0.5364 T12: -0.1181 REMARK 3 T13: 0.0719 T23: -0.0648 REMARK 3 L TENSOR REMARK 3 L11: 2.7563 L22: 6.6509 REMARK 3 L33: 4.5734 L12: -0.7034 REMARK 3 L13: 0.8052 L23: 0.3592 REMARK 3 S TENSOR REMARK 3 S11: 0.2255 S12: -0.4838 S13: -0.0814 REMARK 3 S21: 0.8530 S22: -0.2594 S23: 0.3924 REMARK 3 S31: 0.0644 S32: -0.1022 S33: -0.0076 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8198 9.8958 -7.9453 REMARK 3 T TENSOR REMARK 3 T11: 1.6373 T22: 1.0050 REMARK 3 T33: 0.8348 T12: -0.0671 REMARK 3 T13: 0.0100 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 6.6976 L22: 6.3023 REMARK 3 L33: 8.1360 L12: -2.2314 REMARK 3 L13: -0.7225 L23: 2.0365 REMARK 3 S TENSOR REMARK 3 S11: 0.5712 S12: -0.4196 S13: -0.7783 REMARK 3 S21: 0.1682 S22: -0.5830 S23: 1.0744 REMARK 3 S31: 2.3403 S32: -0.0391 S33: 0.0295 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2852 25.4186 4.9728 REMARK 3 T TENSOR REMARK 3 T11: 1.5391 T22: 1.2631 REMARK 3 T33: 0.4692 T12: 0.0590 REMARK 3 T13: -0.0349 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 4.1054 L22: 2.3729 REMARK 3 L33: 5.3677 L12: 0.8465 REMARK 3 L13: -1.1992 L23: 2.6577 REMARK 3 S TENSOR REMARK 3 S11: -0.3009 S12: -0.4972 S13: 0.1005 REMARK 3 S21: 0.3721 S22: 0.2707 S23: -0.2732 REMARK 3 S31: 0.1476 S32: 0.4776 S33: 0.0661 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7957 36.7462 13.4183 REMARK 3 T TENSOR REMARK 3 T11: 1.4974 T22: 1.5966 REMARK 3 T33: 0.6955 T12: -0.0514 REMARK 3 T13: 0.0542 T23: -0.0920 REMARK 3 L TENSOR REMARK 3 L11: 2.8893 L22: 3.9410 REMARK 3 L33: 9.8010 L12: 0.6095 REMARK 3 L13: -1.8196 L23: 1.4559 REMARK 3 S TENSOR REMARK 3 S11: 1.1660 S12: -1.7658 S13: 0.0662 REMARK 3 S21: 1.2573 S22: -0.6697 S23: -0.3834 REMARK 3 S31: -1.2462 S32: 1.1885 S33: -0.7091 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 405 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4004 21.8778 -5.2611 REMARK 3 T TENSOR REMARK 3 T11: 1.3334 T22: 1.1346 REMARK 3 T33: 0.6357 T12: -0.0513 REMARK 3 T13: -0.0386 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 5.1559 L22: 1.8629 REMARK 3 L33: 3.9515 L12: -2.3591 REMARK 3 L13: -3.0838 L23: 2.5895 REMARK 3 S TENSOR REMARK 3 S11: -0.1498 S12: -0.8494 S13: -0.1860 REMARK 3 S21: 0.1759 S22: 0.4615 S23: -0.3522 REMARK 3 S31: 0.0673 S32: 1.8403 S33: -0.3056 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 686 THROUGH 695 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6528 37.4922 -15.8580 REMARK 3 T TENSOR REMARK 3 T11: 1.6325 T22: 1.5951 REMARK 3 T33: 0.6064 T12: 0.0216 REMARK 3 T13: 0.2248 T23: -0.1166 REMARK 3 L TENSOR REMARK 3 L11: 4.8987 L22: 8.2856 REMARK 3 L33: 5.4770 L12: -3.2902 REMARK 3 L13: -1.5024 L23: 3.6160 REMARK 3 S TENSOR REMARK 3 S11: 1.3067 S12: -0.2930 S13: 1.6437 REMARK 3 S21: -2.0551 S22: -0.4686 S23: -1.1496 REMARK 3 S31: -0.8185 S32: 1.3990 S33: -0.3087 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PZ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8156 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NAACETATE 3M, HEPES 0.1M PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 174.04000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.02000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.53000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.51000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 217.55000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 174.04000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.02000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.51000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 130.53000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 217.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -33.03500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 57.21830 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -43.51000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 HIS A 154 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 PRO A 193 REMARK 465 VAL A 194 REMARK 465 THR A 195 REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 HIS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 207 REMARK 465 SER A 208 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 PHE A 215 REMARK 465 ASN A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 THR A 224 REMARK 465 LYS A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 PHE A 228 REMARK 465 SER A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 MET A 233 REMARK 465 MET A 234 REMARK 465 TYR A 235 REMARK 465 GLN A 236 REMARK 465 ASP A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ASP A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 GLN A 248 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 SER A 453 REMARK 465 ASP B 696 REMARK 465 SER B 697 REMARK 465 SER B 698 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 352 59.54 26.29 REMARK 500 LEU A 367 40.11 -73.50 REMARK 500 ASP A 370 46.01 -81.77 REMARK 500 ASP A 376 78.23 -101.41 REMARK 500 SER A 450 36.96 -94.98 REMARK 500 HIS B 687 70.43 -106.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PZ6 A 156 453 UNP Q9PTN2 VDRA_DANRE 156 453 DBREF 8PZ6 B 686 698 UNP Q15596 NCOA2_HUMAN 686 698 SEQADV 8PZ6 GLY A 152 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PZ6 SER A 153 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PZ6 HIS A 154 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PZ6 MET A 155 UNP Q9PTN2 EXPRESSION TAG SEQRES 1 A 302 GLY SER HIS MET LEU SER ASP GLU GLN MET GLN ILE ILE SEQRES 2 A 302 ASN SER LEU VAL GLU ALA HIS HIS LYS THR TYR ASP ASP SEQRES 3 A 302 SER TYR SER ASP PHE VAL ARG PHE ARG PRO PRO VAL ARG SEQRES 4 A 302 GLU GLY PRO VAL THR ARG SER ALA SER ARG ALA ALA SER SEQRES 5 A 302 LEU HIS SER LEU SER ASP ALA SER SER ASP SER PHE ASN SEQRES 6 A 302 HIS SER PRO GLU SER VAL ASP THR LYS LEU ASN PHE SER SEQRES 7 A 302 ASN LEU LEU MET MET TYR GLN ASP SER GLY SER PRO ASP SEQRES 8 A 302 SER SER GLU GLU ASP GLN GLN SER ARG LEU SER MET LEU SEQRES 9 A 302 PRO HIS LEU ALA ASP LEU VAL SER TYR SER ILE GLN LYS SEQRES 10 A 302 VAL ILE GLY PHE ALA LYS MET ILE PRO GLY PHE ARG ASP SEQRES 11 A 302 LEU THR ALA GLU ASP GLN ILE ALA LEU LEU LYS SER SER SEQRES 12 A 302 ALA ILE GLU ILE ILE MET LEU ARG SER ASN GLN SER PHE SEQRES 13 A 302 SER LEU GLU ASP MET SER TRP SER CYS GLY GLY PRO ASP SEQRES 14 A 302 PHE LYS TYR CYS ILE ASN ASP VAL THR LYS ALA GLY HIS SEQRES 15 A 302 THR LEU GLU LEU LEU GLU PRO LEU VAL LYS PHE GLN VAL SEQRES 16 A 302 GLY LEU LYS LYS LEU LYS LEU HIS GLU GLU GLU HIS VAL SEQRES 17 A 302 LEU LEU MET ALA ILE CYS LEU LEU SER PRO ASP ARG PRO SEQRES 18 A 302 GLY VAL GLN ASP HIS VAL ARG ILE GLU ALA LEU GLN ASP SEQRES 19 A 302 ARG LEU CYS ASP VAL LEU GLN ALA TYR ILE ARG ILE GLN SEQRES 20 A 302 HIS PRO GLY GLY ARG LEU LEU TYR ALA LYS MET ILE GLN SEQRES 21 A 302 LYS LEU ALA ASP LEU ARG SER LEU ASN GLU GLU HIS SER SEQRES 22 A 302 LYS GLN TYR ARG SER LEU SER PHE GLN PRO GLU HIS SER SEQRES 23 A 302 MET GLN LEU THR PRO LEU VAL LEU GLU VAL PHE GLY SER SEQRES 24 A 302 GLU VAL SER SEQRES 1 B 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER HET IG5 A4000 35 HETNAM IG5 (1~{R},3~{R})-5-[(2~{E})-2-[(4~{A}~{R},5~{S}, HETNAM 2 IG5 9~{A}~{S})-4~{A}-METHYL-5-[(2~{R})-6-METHYL-6- HETNAM 3 IG5 OXIDANYL-HEPTAN-2-YL]-3,4,5,6,7,8,9,9~{A}-OCTAHYDRO- HETNAM 4 IG5 2~{H}-BENZO[7]ANNULEN-1-YLIDENE]ETHYLIDENE]-2-(3- HETNAM 5 IG5 OXIDANYLPROPYLIDENE)CYCLOHEXANE-1,3-DIOL FORMUL 3 IG5 C31 H52 O4 FORMUL 4 HOH *17(H2 O) HELIX 1 AA1 SER A 157 THR A 174 1 18 HELIX 2 AA2 TYR A 179 VAL A 183 5 5 HELIX 3 AA3 MET A 254 ILE A 276 1 23 HELIX 4 AA4 THR A 283 SER A 303 1 21 HELIX 5 AA5 GLY A 318 ASP A 320 5 3 HELIX 6 AA6 CYS A 324 LYS A 330 1 7 HELIX 7 AA7 THR A 334 LEU A 351 1 18 HELIX 8 AA8 HIS A 354 LEU A 367 1 14 HELIX 9 AA9 ASP A 376 HIS A 399 1 24 HELIX 10 AB1 LEU A 404 PHE A 432 1 29 HELIX 11 AB2 GLN A 433 MET A 438 1 6 HELIX 12 AB3 THR A 441 PHE A 448 1 8 HELIX 13 AB4 HIS B 687 LEU B 694 1 8 SHEET 1 AA1 3 PHE A 307 SER A 308 0 SHEET 2 AA1 3 SER A 313 SER A 315 -1 N SER A 313 O SER A 308 SHEET 3 AA1 3 LYS A 322 TYR A 323 -1 O TYR A 323 N TRP A 314 CRYST1 66.070 66.070 261.060 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015135 0.008738 0.000000 0.00000 SCALE2 0.000000 0.017477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003831 0.00000