HEADER TRANSCRIPTION 27-JUL-23 8PZ7 TITLE CRYSTAL STRUCTURE OF VDR COMPLEX WITH D-BISHOMO-1A,25-DIHYDROXYVITAMIN TITLE 2 D3 ANALOG 57 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D3 RECEPTOR A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDR-A,1,25-DIHYDROXYVITAMIN D3 RECEPTOR A,NUCLEAR RECEPTOR COMPND 5 SUBFAMILY 1 GROUP I MEMBER 1-A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 11 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: VDRA, NR1I1A, VDR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, VDR, AGONIST, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ROCHEL REVDAT 2 24-APR-24 8PZ7 1 JRNL REVDAT 1 30-AUG-23 8PZ7 0 JRNL AUTH A.FABISIAK,P.BRZEMINSKI,R.R.SICINSKI,N.ROCHEL,E.MAJ, JRNL AUTH 2 B.FILIP-PSURSKA,J.WIETRZYK,L.A.PLUM,H.F.DELUCA JRNL TITL DESIGN, SYNTHESIS, AND BIOLOGICAL ACTIVITY OF D-BISHOMO-1 JRNL TITL 2 ALPHA ,25-DIHYDROXYVITAMIN D 3 ANALOGS AND THEIR CRYSTAL JRNL TITL 3 STRUCTURES WITH THE VITAMIN D NUCLEAR RECEPTOR. JRNL REF EUR.J.MED.CHEM. V. 271 16403 2024 JRNL REFN ISSN 0223-5234 JRNL PMID 38615411 JRNL DOI 10.1016/J.EJMECH.2024.116403 REMARK 2 REMARK 2 RESOLUTION. 2.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 7998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0600 - 5.3300 1.00 1341 150 0.1872 0.2346 REMARK 3 2 5.3300 - 4.2300 1.00 1212 134 0.1661 0.2270 REMARK 3 3 4.2300 - 3.7000 1.00 1182 132 0.1859 0.2641 REMARK 3 4 3.7000 - 3.3600 0.99 1176 131 0.2147 0.2808 REMARK 3 5 3.3600 - 3.1200 1.00 1169 131 0.2362 0.3397 REMARK 3 6 3.1200 - 2.9300 0.96 1116 124 0.3328 0.3649 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 NULL REMARK 3 ANGLE : 0.914 NULL REMARK 3 CHIRALITY : 0.050 315 REMARK 3 PLANARITY : 0.010 354 REMARK 3 DIHEDRAL : 17.720 807 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.4878 39.6609 6.3595 REMARK 3 T TENSOR REMARK 3 T11: 0.7591 T22: 1.0158 REMARK 3 T33: 0.9277 T12: -0.1287 REMARK 3 T13: 0.1681 T23: -0.1899 REMARK 3 L TENSOR REMARK 3 L11: 2.7507 L22: 6.7250 REMARK 3 L33: 7.9024 L12: -0.5997 REMARK 3 L13: -2.2773 L23: -5.8001 REMARK 3 S TENSOR REMARK 3 S11: 0.3102 S12: 0.0789 S13: 1.6475 REMARK 3 S21: 0.4103 S22: -0.0615 S23: 0.5980 REMARK 3 S31: -1.4529 S32: -0.4352 S33: -0.3699 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6097 23.3696 -10.7686 REMARK 3 T TENSOR REMARK 3 T11: 0.6502 T22: 1.0904 REMARK 3 T33: 0.9710 T12: 0.0267 REMARK 3 T13: -0.0570 T23: -0.1483 REMARK 3 L TENSOR REMARK 3 L11: 5.2732 L22: 8.0505 REMARK 3 L33: 3.4550 L12: 2.4098 REMARK 3 L13: 3.8645 L23: 3.8259 REMARK 3 S TENSOR REMARK 3 S11: 0.3796 S12: -0.4004 S13: 0.0012 REMARK 3 S21: 0.0819 S22: -0.0996 S23: 1.3932 REMARK 3 S31: -0.4917 S32: -1.6529 S33: -0.2925 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2914 11.2078 -16.8035 REMARK 3 T TENSOR REMARK 3 T11: 0.9673 T22: 0.8254 REMARK 3 T33: 0.7903 T12: -0.1222 REMARK 3 T13: 0.1383 T23: -0.0874 REMARK 3 L TENSOR REMARK 3 L11: 2.9641 L22: 5.7909 REMARK 3 L33: 8.2729 L12: 2.2791 REMARK 3 L13: 3.5328 L23: -1.3085 REMARK 3 S TENSOR REMARK 3 S11: 0.1875 S12: -0.9726 S13: -0.5904 REMARK 3 S21: -0.3787 S22: -0.0335 S23: 0.2152 REMARK 3 S31: 1.3338 S32: -0.5185 S33: -0.2937 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9185 27.7498 -4.7352 REMARK 3 T TENSOR REMARK 3 T11: 0.5528 T22: 0.6637 REMARK 3 T33: 0.4051 T12: -0.0839 REMARK 3 T13: 0.0545 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 5.4132 L22: 3.3721 REMARK 3 L33: 7.4870 L12: -1.2114 REMARK 3 L13: -1.9843 L23: 0.1187 REMARK 3 S TENSOR REMARK 3 S11: 0.1394 S12: -0.5531 S13: -0.0278 REMARK 3 S21: 0.2338 S22: -0.1974 S23: 0.2869 REMARK 3 S31: 0.0959 S32: -0.1597 S33: 0.0773 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 316 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8373 10.7331 -8.4653 REMARK 3 T TENSOR REMARK 3 T11: 1.4101 T22: 0.7276 REMARK 3 T33: 1.1240 T12: -0.2051 REMARK 3 T13: 0.1471 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 2.5186 L22: 3.3604 REMARK 3 L33: 5.8634 L12: 1.6542 REMARK 3 L13: -1.9812 L23: 1.1378 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: -0.2033 S13: -0.9584 REMARK 3 S21: 0.8960 S22: -0.6608 S23: 0.5715 REMARK 3 S31: 1.7800 S32: -0.4842 S33: 0.6791 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1558 21.7507 5.9224 REMARK 3 T TENSOR REMARK 3 T11: 0.9038 T22: 0.7683 REMARK 3 T33: 0.5829 T12: -0.0155 REMARK 3 T13: -0.0623 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 9.6904 L22: 3.0083 REMARK 3 L33: 6.8983 L12: -2.6062 REMARK 3 L13: -3.7882 L23: 2.6335 REMARK 3 S TENSOR REMARK 3 S11: -0.8207 S12: -0.9843 S13: -0.4867 REMARK 3 S21: 0.7370 S22: 0.4371 S23: 0.1328 REMARK 3 S31: 0.7697 S32: 0.1486 S33: 0.3360 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 367 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3723 30.0735 7.3383 REMARK 3 T TENSOR REMARK 3 T11: 0.7929 T22: 0.9740 REMARK 3 T33: 0.5722 T12: -0.0330 REMARK 3 T13: -0.0290 T23: -0.0696 REMARK 3 L TENSOR REMARK 3 L11: 7.4047 L22: 2.6606 REMARK 3 L33: 7.7658 L12: -2.0787 REMARK 3 L13: -3.6976 L23: 3.3358 REMARK 3 S TENSOR REMARK 3 S11: -0.1688 S12: -1.2959 S13: 0.3450 REMARK 3 S21: 0.6936 S22: 0.3298 S23: -0.2042 REMARK 3 S31: 0.3282 S32: 1.2115 S33: -0.1677 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 432 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1163 22.0786 -16.9235 REMARK 3 T TENSOR REMARK 3 T11: 0.6808 T22: 0.8191 REMARK 3 T33: 0.6527 T12: 0.0793 REMARK 3 T13: 0.1016 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 4.0102 L22: 6.0125 REMARK 3 L33: 6.2056 L12: 0.6057 REMARK 3 L13: 0.1111 L23: 3.4456 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.1757 S13: -0.2268 REMARK 3 S21: 0.1999 S22: 0.3904 S23: -0.7377 REMARK 3 S31: 0.3242 S32: 0.8516 S33: -0.2662 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 686 THROUGH 695 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6059 38.1852 -15.3095 REMARK 3 T TENSOR REMARK 3 T11: 1.0773 T22: 0.6952 REMARK 3 T33: 0.7481 T12: -0.1007 REMARK 3 T13: -0.0020 T23: -0.0781 REMARK 3 L TENSOR REMARK 3 L11: 7.3370 L22: 4.9503 REMARK 3 L33: 4.8464 L12: 3.2957 REMARK 3 L13: -0.9657 L23: 3.6136 REMARK 3 S TENSOR REMARK 3 S11: 0.8046 S12: -0.2599 S13: 0.8999 REMARK 3 S21: 0.0998 S22: -0.1138 S23: -0.0264 REMARK 3 S31: -1.7691 S32: 1.1559 S33: -0.7143 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8045 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.930 REMARK 200 RESOLUTION RANGE LOW (A) : 48.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NH4ACETATE 3.5M, BISTRISPROPANE 0.1M REMARK 280 PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 176.02667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.01333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.02000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.00667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 220.03333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 176.02667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.01333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.00667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 132.02000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 220.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 HIS A 154 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 PRO A 193 REMARK 465 VAL A 194 REMARK 465 THR A 195 REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 HIS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 207 REMARK 465 SER A 208 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 PHE A 215 REMARK 465 ASN A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 THR A 224 REMARK 465 LYS A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 PHE A 228 REMARK 465 SER A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 MET A 233 REMARK 465 MET A 234 REMARK 465 TYR A 235 REMARK 465 GLN A 236 REMARK 465 ASP A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ASP A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 GLN A 248 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 VAL A 452 REMARK 465 SER A 453 REMARK 465 ASP B 696 REMARK 465 SER B 697 REMARK 465 SER B 698 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 176 O HOH A 4101 2.10 REMARK 500 O HOH A 4106 O HOH A 4123 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 181 3.22 -64.42 REMARK 500 CYS A 316 66.24 -108.28 REMARK 500 PHE A 321 33.19 -97.79 REMARK 500 LYS A 330 3.54 -69.79 REMARK 500 LYS A 352 55.47 33.51 REMARK 500 ASP A 370 47.86 -75.98 REMARK 500 SER A 450 72.21 -107.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PZ7 A 156 453 UNP Q9PTN2 VDRA_DANRE 156 453 DBREF 8PZ7 B 686 698 UNP Q15596 NCOA2_HUMAN 686 698 SEQADV 8PZ7 GLY A 152 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PZ7 SER A 153 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PZ7 HIS A 154 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PZ7 MET A 155 UNP Q9PTN2 EXPRESSION TAG SEQRES 1 A 302 GLY SER HIS MET LEU SER ASP GLU GLN MET GLN ILE ILE SEQRES 2 A 302 ASN SER LEU VAL GLU ALA HIS HIS LYS THR TYR ASP ASP SEQRES 3 A 302 SER TYR SER ASP PHE VAL ARG PHE ARG PRO PRO VAL ARG SEQRES 4 A 302 GLU GLY PRO VAL THR ARG SER ALA SER ARG ALA ALA SER SEQRES 5 A 302 LEU HIS SER LEU SER ASP ALA SER SER ASP SER PHE ASN SEQRES 6 A 302 HIS SER PRO GLU SER VAL ASP THR LYS LEU ASN PHE SER SEQRES 7 A 302 ASN LEU LEU MET MET TYR GLN ASP SER GLY SER PRO ASP SEQRES 8 A 302 SER SER GLU GLU ASP GLN GLN SER ARG LEU SER MET LEU SEQRES 9 A 302 PRO HIS LEU ALA ASP LEU VAL SER TYR SER ILE GLN LYS SEQRES 10 A 302 VAL ILE GLY PHE ALA LYS MET ILE PRO GLY PHE ARG ASP SEQRES 11 A 302 LEU THR ALA GLU ASP GLN ILE ALA LEU LEU LYS SER SER SEQRES 12 A 302 ALA ILE GLU ILE ILE MET LEU ARG SER ASN GLN SER PHE SEQRES 13 A 302 SER LEU GLU ASP MET SER TRP SER CYS GLY GLY PRO ASP SEQRES 14 A 302 PHE LYS TYR CYS ILE ASN ASP VAL THR LYS ALA GLY HIS SEQRES 15 A 302 THR LEU GLU LEU LEU GLU PRO LEU VAL LYS PHE GLN VAL SEQRES 16 A 302 GLY LEU LYS LYS LEU LYS LEU HIS GLU GLU GLU HIS VAL SEQRES 17 A 302 LEU LEU MET ALA ILE CYS LEU LEU SER PRO ASP ARG PRO SEQRES 18 A 302 GLY VAL GLN ASP HIS VAL ARG ILE GLU ALA LEU GLN ASP SEQRES 19 A 302 ARG LEU CYS ASP VAL LEU GLN ALA TYR ILE ARG ILE GLN SEQRES 20 A 302 HIS PRO GLY GLY ARG LEU LEU TYR ALA LYS MET ILE GLN SEQRES 21 A 302 LYS LEU ALA ASP LEU ARG SER LEU ASN GLU GLU HIS SER SEQRES 22 A 302 LYS GLN TYR ARG SER LEU SER PHE GLN PRO GLU HIS SER SEQRES 23 A 302 MET GLN LEU THR PRO LEU VAL LEU GLU VAL PHE GLY SER SEQRES 24 A 302 GLU VAL SER SEQRES 1 B 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER HET IG0 A4000 32 HETNAM IG0 (1~{R},3~{R})-5-[(2~{E})-2-[(4~{A}~{R},5~{R}, HETNAM 2 IG0 9~{A}~{S})-4~{A}-METHYL-5-[(2~{R})-6-METHYL-6- HETNAM 3 IG0 OXIDANYL-HEPTAN-2-YL]-3,4,5,8,9,9~{A}-HEXAHYDRO-2~{H}- HETNAM 4 IG0 BENZO[7]ANNULEN-1-YLIDENE]ETHYLIDENE]-2-METHYL- HETNAM 5 IG0 CYCLOHEXANE-1,3-DIOL FORMUL 3 IG0 C29 H50 O3 FORMUL 4 HOH *24(H2 O) HELIX 1 AA1 SER A 157 TYR A 175 1 19 HELIX 2 AA2 TYR A 179 PHE A 185 5 7 HELIX 3 AA3 MET A 254 LYS A 274 1 21 HELIX 4 AA4 THR A 283 SER A 303 1 21 HELIX 5 AA5 CYS A 324 LYS A 330 1 7 HELIX 6 AA6 THR A 334 LEU A 351 1 18 HELIX 7 AA7 HIS A 354 LEU A 367 1 14 HELIX 8 AA8 ASP A 376 HIS A 399 1 24 HELIX 9 AA9 LEU A 404 PHE A 432 1 29 HELIX 10 AB1 GLN A 433 MET A 438 1 6 HELIX 11 AB2 THR A 441 GLY A 449 1 9 HELIX 12 AB3 HIS B 687 LEU B 694 1 8 SHEET 1 AA1 3 PHE A 307 SER A 308 0 SHEET 2 AA1 3 SER A 313 SER A 315 -1 O SER A 313 N SER A 308 SHEET 3 AA1 3 LYS A 322 TYR A 323 -1 O TYR A 323 N TRP A 314 CRYST1 66.240 66.240 264.040 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015097 0.008716 0.000000 0.00000 SCALE2 0.000000 0.017432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003787 0.00000