HEADER TRANSCRIPTION 27-JUL-23 8PZ9 TITLE CRYSTAL STRUCTURE OF VDR IN COMPLEX WITH D-BISHOMO-1A,25- TITLE 2 DIHYDROXYVITAMIN D3 ANALOG 55 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D3 RECEPTOR A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDR-A,1,25-DIHYDROXYVITAMIN D3 RECEPTOR A,NUCLEAR RECEPTOR COMPND 5 SUBFAMILY 1 GROUP I MEMBER 1-A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 11 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: VDRA, NR1I1A, VDR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, VDR, AGONIST, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ROCHEL REVDAT 2 24-APR-24 8PZ9 1 JRNL REVDAT 1 30-AUG-23 8PZ9 0 JRNL AUTH A.FABISIAK,P.BRZEMINSKI,R.R.SICINSKI,N.ROCHEL,E.MAJ, JRNL AUTH 2 B.FILIP-PSURSKA,J.WIETRZYK,L.A.PLUM,H.F.DELUCA JRNL TITL DESIGN, SYNTHESIS, AND BIOLOGICAL ACTIVITY OF D-BISHOMO-1 JRNL TITL 2 ALPHA ,25-DIHYDROXYVITAMIN D 3 ANALOGS AND THEIR CRYSTAL JRNL TITL 3 STRUCTURES WITH THE VITAMIN D NUCLEAR RECEPTOR. JRNL REF EUR.J.MED.CHEM. V. 271 16403 2024 JRNL REFN ISSN 0223-5234 JRNL PMID 38615411 JRNL DOI 10.1016/J.EJMECH.2024.116403 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7800 - 5.2400 1.00 1372 152 0.2049 0.2919 REMARK 3 2 5.2300 - 4.1600 1.00 1243 139 0.1576 0.2297 REMARK 3 3 4.1600 - 3.6400 1.00 1221 135 0.1723 0.2578 REMARK 3 4 3.6400 - 3.3100 1.00 1208 134 0.2134 0.2585 REMARK 3 5 3.3100 - 3.0700 1.00 1207 135 0.2435 0.3459 REMARK 3 6 3.0700 - 2.8900 1.00 1189 132 0.2721 0.3617 REMARK 3 7 2.8900 - 2.7400 0.99 1160 130 0.2641 0.3665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : 0.959 NULL REMARK 3 CHIRALITY : 0.055 315 REMARK 3 PLANARITY : 0.008 355 REMARK 3 DIHEDRAL : 17.615 807 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 155:174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.174 38.962 6.902 REMARK 3 T TENSOR REMARK 3 T11: 0.7689 T22: 0.7499 REMARK 3 T33: 0.7865 T12: -0.1779 REMARK 3 T13: 0.1195 T23: -0.1714 REMARK 3 L TENSOR REMARK 3 L11: 8.3991 L22: 5.9980 REMARK 3 L33: 3.4129 L12: -3.6476 REMARK 3 L13: -3.2413 L23: -1.2149 REMARK 3 S TENSOR REMARK 3 S11: -0.3200 S12: 0.1581 S13: 1.4124 REMARK 3 S21: 0.9889 S22: 0.4095 S23: 0.3605 REMARK 3 S31: -0.4013 S32: 0.2120 S33: -0.0704 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 175:252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.990 17.729 -13.483 REMARK 3 T TENSOR REMARK 3 T11: 0.4628 T22: 0.6381 REMARK 3 T33: 0.5536 T12: -0.1342 REMARK 3 T13: -0.0245 T23: -0.0839 REMARK 3 L TENSOR REMARK 3 L11: 5.7277 L22: 7.2999 REMARK 3 L33: 7.8856 L12: 2.4834 REMARK 3 L13: 0.5465 L23: 3.4379 REMARK 3 S TENSOR REMARK 3 S11: 0.3929 S12: 0.0575 S13: 0.5946 REMARK 3 S21: 0.0385 S22: -0.5585 S23: 1.0202 REMARK 3 S31: 0.2250 S32: -1.0927 S33: 0.1652 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 253:275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.233 25.297 -10.648 REMARK 3 T TENSOR REMARK 3 T11: 0.5243 T22: 0.5529 REMARK 3 T33: 0.5081 T12: -0.0417 REMARK 3 T13: -0.0106 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 5.4390 L22: 7.7701 REMARK 3 L33: 7.6562 L12: 2.3192 REMARK 3 L13: -1.9373 L23: 3.8373 REMARK 3 S TENSOR REMARK 3 S11: -0.1114 S12: -0.1972 S13: 0.3036 REMARK 3 S21: -0.0708 S22: -0.4589 S23: 1.2449 REMARK 3 S31: 0.1607 S32: -0.4583 S33: 0.4696 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 276:305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.898 33.308 -2.651 REMARK 3 T TENSOR REMARK 3 T11: 0.7114 T22: 0.6906 REMARK 3 T33: 0.4253 T12: -0.2077 REMARK 3 T13: -0.0144 T23: -0.0856 REMARK 3 L TENSOR REMARK 3 L11: 9.0361 L22: 8.8809 REMARK 3 L33: 4.2844 L12: 0.7527 REMARK 3 L13: -3.0546 L23: 0.7683 REMARK 3 S TENSOR REMARK 3 S11: 0.5830 S12: -0.8994 S13: 0.7890 REMARK 3 S21: 0.4183 S22: -0.3117 S23: -0.2380 REMARK 3 S31: -0.6516 S32: 0.8932 S33: -0.2952 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 306:324 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.881 11.621 -3.608 REMARK 3 T TENSOR REMARK 3 T11: 1.0844 T22: 0.9128 REMARK 3 T33: 1.0758 T12: -0.3157 REMARK 3 T13: 0.2534 T23: -0.0750 REMARK 3 L TENSOR REMARK 3 L11: 9.4394 L22: 6.1167 REMARK 3 L33: 4.6827 L12: 0.2352 REMARK 3 L13: -0.9923 L23: 0.1913 REMARK 3 S TENSOR REMARK 3 S11: -0.5073 S12: -0.5140 S13: -1.0574 REMARK 3 S21: 0.0618 S22: -0.4121 S23: 2.2759 REMARK 3 S31: 2.6701 S32: -2.4491 S33: 0.8037 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 325:334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.884 8.719 -8.585 REMARK 3 T TENSOR REMARK 3 T11: 1.3408 T22: 0.9464 REMARK 3 T33: 1.0458 T12: 0.0056 REMARK 3 T13: 0.2221 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 8.2637 L22: 7.0758 REMARK 3 L33: 2.4815 L12: -6.7572 REMARK 3 L13: -0.5905 L23: 2.4623 REMARK 3 S TENSOR REMARK 3 S11: 0.2175 S12: -1.0088 S13: -1.1531 REMARK 3 S21: 0.4473 S22: -0.4768 S23: -1.4657 REMARK 3 S31: 2.1465 S32: 0.5380 S33: -0.0237 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 335:366 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.630 21.048 6.036 REMARK 3 T TENSOR REMARK 3 T11: 0.8034 T22: 0.7845 REMARK 3 T33: 0.5063 T12: -0.1960 REMARK 3 T13: -0.0151 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 3.9811 L22: 5.1838 REMARK 3 L33: 8.5682 L12: -1.4007 REMARK 3 L13: -4.4647 L23: 3.4350 REMARK 3 S TENSOR REMARK 3 S11: -0.2791 S12: -0.6741 S13: -0.4842 REMARK 3 S21: 1.1565 S22: 0.0544 S23: 0.0286 REMARK 3 S31: 0.9804 S32: -0.0641 S33: 0.3805 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 367:376 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.821 36.236 1.622 REMARK 3 T TENSOR REMARK 3 T11: 1.3310 T22: 0.9717 REMARK 3 T33: 0.7758 T12: -0.2075 REMARK 3 T13: -0.2349 T23: -0.1558 REMARK 3 L TENSOR REMARK 3 L11: 9.9083 L22: 4.0267 REMARK 3 L33: 1.9869 L12: -5.5263 REMARK 3 L13: -1.3586 L23: 1.3826 REMARK 3 S TENSOR REMARK 3 S11: 0.3699 S12: 0.9253 S13: 2.3236 REMARK 3 S21: 1.6595 S22: -0.4832 S23: -0.9795 REMARK 3 S31: -0.5803 S32: 2.2133 S33: -0.0122 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 377:404 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.923 35.305 14.248 REMARK 3 T TENSOR REMARK 3 T11: 0.7872 T22: 1.1917 REMARK 3 T33: 0.6918 T12: -0.2159 REMARK 3 T13: 0.0215 T23: -0.2078 REMARK 3 L TENSOR REMARK 3 L11: 4.7225 L22: 4.0508 REMARK 3 L33: 6.8888 L12: -1.4201 REMARK 3 L13: -2.8529 L23: 0.8797 REMARK 3 S TENSOR REMARK 3 S11: 0.6325 S12: -1.4728 S13: -0.0491 REMARK 3 S21: 1.4762 S22: -0.7039 S23: -0.0825 REMARK 3 S31: -0.6947 S32: 1.3314 S33: -0.1086 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 405:431 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.710 21.286 2.356 REMARK 3 T TENSOR REMARK 3 T11: 0.9184 T22: 0.9058 REMARK 3 T33: 0.5999 T12: -0.0271 REMARK 3 T13: -0.1425 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 4.9453 L22: 3.4719 REMARK 3 L33: 9.2795 L12: -1.5202 REMARK 3 L13: -4.9080 L23: 3.5989 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: -1.3397 S13: -0.1327 REMARK 3 S21: 0.5863 S22: 0.1568 S23: -0.3864 REMARK 3 S31: 0.7260 S32: 1.2296 S33: 0.1426 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN A AND RESID 432:451 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.223 22.211 -17.070 REMARK 3 T TENSOR REMARK 3 T11: 0.7349 T22: 0.7408 REMARK 3 T33: 0.5817 T12: 0.0570 REMARK 3 T13: 0.0480 T23: 0.0666 REMARK 3 L TENSOR REMARK 3 L11: 7.3843 L22: 5.2411 REMARK 3 L33: 3.0814 L12: 2.1965 REMARK 3 L13: -0.2242 L23: 3.1913 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: -0.3600 S13: -0.2440 REMARK 3 S21: 0.9854 S22: -0.0827 S23: -0.6090 REMARK 3 S31: 0.6627 S32: 1.3263 S33: 0.1852 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 687:695 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.752 38.141 -15.024 REMARK 3 T TENSOR REMARK 3 T11: 0.8539 T22: 0.6035 REMARK 3 T33: 0.7440 T12: -0.0905 REMARK 3 T13: -0.0807 T23: -0.0922 REMARK 3 L TENSOR REMARK 3 L11: 1.1480 L22: 2.8237 REMARK 3 L33: 7.2021 L12: 1.2765 REMARK 3 L13: 2.6582 L23: 2.2891 REMARK 3 S TENSOR REMARK 3 S11: 0.2591 S12: 0.5823 S13: 2.3309 REMARK 3 S21: -0.2471 S22: -0.3435 S23: -0.2810 REMARK 3 S31: -2.3566 S32: 2.6492 S33: 0.0392 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PZ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9579 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 24.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NAACETATE 3M, HEPES 0.1M PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.88667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.94333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.91500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.97167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 219.85833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 175.88667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.94333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.97167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 131.91500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 219.85833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 HIS A 154 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 PRO A 193 REMARK 465 VAL A 194 REMARK 465 THR A 195 REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 HIS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 207 REMARK 465 SER A 208 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 PHE A 215 REMARK 465 ASN A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 THR A 224 REMARK 465 LYS A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 PHE A 228 REMARK 465 SER A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 MET A 233 REMARK 465 MET A 234 REMARK 465 TYR A 235 REMARK 465 GLN A 236 REMARK 465 ASP A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ASP A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 GLN A 248 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 VAL A 452 REMARK 465 SER A 453 REMARK 465 LYS B 686 REMARK 465 ASP B 696 REMARK 465 SER B 697 REMARK 465 SER B 698 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 4107 O HOH A 4121 2.02 REMARK 500 N MET A 155 O HOH A 4101 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 324 -169.41 -101.18 REMARK 500 ASP A 370 58.78 -94.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 692 0.29 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8PZ9 A 156 453 UNP Q9PTN2 VDRA_DANRE 156 453 DBREF 8PZ9 B 686 698 UNP Q15596 NCOA2_HUMAN 686 698 SEQADV 8PZ9 GLY A 152 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PZ9 SER A 153 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PZ9 HIS A 154 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PZ9 MET A 155 UNP Q9PTN2 EXPRESSION TAG SEQRES 1 A 302 GLY SER HIS MET LEU SER ASP GLU GLN MET GLN ILE ILE SEQRES 2 A 302 ASN SER LEU VAL GLU ALA HIS HIS LYS THR TYR ASP ASP SEQRES 3 A 302 SER TYR SER ASP PHE VAL ARG PHE ARG PRO PRO VAL ARG SEQRES 4 A 302 GLU GLY PRO VAL THR ARG SER ALA SER ARG ALA ALA SER SEQRES 5 A 302 LEU HIS SER LEU SER ASP ALA SER SER ASP SER PHE ASN SEQRES 6 A 302 HIS SER PRO GLU SER VAL ASP THR LYS LEU ASN PHE SER SEQRES 7 A 302 ASN LEU LEU MET MET TYR GLN ASP SER GLY SER PRO ASP SEQRES 8 A 302 SER SER GLU GLU ASP GLN GLN SER ARG LEU SER MET LEU SEQRES 9 A 302 PRO HIS LEU ALA ASP LEU VAL SER TYR SER ILE GLN LYS SEQRES 10 A 302 VAL ILE GLY PHE ALA LYS MET ILE PRO GLY PHE ARG ASP SEQRES 11 A 302 LEU THR ALA GLU ASP GLN ILE ALA LEU LEU LYS SER SER SEQRES 12 A 302 ALA ILE GLU ILE ILE MET LEU ARG SER ASN GLN SER PHE SEQRES 13 A 302 SER LEU GLU ASP MET SER TRP SER CYS GLY GLY PRO ASP SEQRES 14 A 302 PHE LYS TYR CYS ILE ASN ASP VAL THR LYS ALA GLY HIS SEQRES 15 A 302 THR LEU GLU LEU LEU GLU PRO LEU VAL LYS PHE GLN VAL SEQRES 16 A 302 GLY LEU LYS LYS LEU LYS LEU HIS GLU GLU GLU HIS VAL SEQRES 17 A 302 LEU LEU MET ALA ILE CYS LEU LEU SER PRO ASP ARG PRO SEQRES 18 A 302 GLY VAL GLN ASP HIS VAL ARG ILE GLU ALA LEU GLN ASP SEQRES 19 A 302 ARG LEU CYS ASP VAL LEU GLN ALA TYR ILE ARG ILE GLN SEQRES 20 A 302 HIS PRO GLY GLY ARG LEU LEU TYR ALA LYS MET ILE GLN SEQRES 21 A 302 LYS LEU ALA ASP LEU ARG SER LEU ASN GLU GLU HIS SER SEQRES 22 A 302 LYS GLN TYR ARG SER LEU SER PHE GLN PRO GLU HIS SER SEQRES 23 A 302 MET GLN LEU THR PRO LEU VAL LEU GLU VAL PHE GLY SER SEQRES 24 A 302 GLU VAL SER SEQRES 1 B 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER HET IFK A4000 32 HETNAM IFK (1~{R},3~{R})-5-[(2~{E})-2-[(4~{A}~{R},5~{R}, HETNAM 2 IFK 9~{A}~{S})-4~{A}-METHYL-5-[(2~{R})-6-METHYL-6- HETNAM 3 IFK OXIDANYL-HEPTAN-2-YL]-3,4,5,8,9,9~{A}-HEXAHYDRO-2~{H}- HETNAM 4 IFK BENZO[7]ANNULEN-1-YLIDENE]ETHYLIDENE]-2-METHYLIDENE- HETNAM 5 IFK CYCLOHEXANE-1,3-DIOL FORMUL 3 IFK C29 H48 O3 FORMUL 4 HOH *25(H2 O) HELIX 1 AA1 SER A 157 TYR A 175 1 19 HELIX 2 AA2 TYR A 179 PHE A 185 5 7 HELIX 3 AA3 MET A 254 ILE A 276 1 23 HELIX 4 AA4 GLY A 278 LEU A 282 5 5 HELIX 5 AA5 THR A 283 SER A 303 1 21 HELIX 6 AA6 CYS A 324 LYS A 330 1 7 HELIX 7 AA7 THR A 334 LEU A 351 1 18 HELIX 8 AA8 HIS A 354 LEU A 367 1 14 HELIX 9 AA9 ASP A 376 HIS A 399 1 24 HELIX 10 AB1 LEU A 404 PHE A 432 1 29 HELIX 11 AB2 GLN A 433 MET A 438 1 6 HELIX 12 AB3 THR A 441 PHE A 448 1 8 HELIX 13 AB4 LYS B 688 LEU B 694 1 7 SHEET 1 AA1 3 PHE A 307 SER A 308 0 SHEET 2 AA1 3 SER A 313 SER A 315 -1 O SER A 313 N SER A 308 SHEET 3 AA1 3 LYS A 322 TYR A 323 -1 O TYR A 323 N TRP A 314 CRYST1 65.790 65.790 263.830 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015200 0.008776 0.000000 0.00000 SCALE2 0.000000 0.017551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003790 0.00000