HEADER DNA BINDING PROTEIN 01-AUG-23 8Q1X TITLE STRUCTURAL ANALYSIS OF PLD3 REVEALS INSIGHTS INTO THE MECHANISM OF TITLE 2 LYSOSOMAL 5' EXONUCLEASE-MEDIATED NUCLEIC ACID DEGRADATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-3' EXONUCLEASE PLD3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLD3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLD3, STRUCTURAL BIOLOGY, LYSOSOME, DNA/RNA DEGRADATION, KEYWDS 2 PHOSPHOLIPASE D, 5' EXONUCLEASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ROSKE,O.DAUMKE,M.DAMME REVDAT 2 24-JAN-24 8Q1X 1 JRNL REVDAT 1 06-DEC-23 8Q1X 0 JRNL AUTH Y.ROSKE,C.CAPPEL,N.CREMER,P.HOFFMANN,T.KOUDELKA,A.THOLEY, JRNL AUTH 2 U.HEINEMANN,O.DAUMKE,M.DAMME JRNL TITL STRUCTURAL ANALYSIS OF PLD3 REVEALS INSIGHTS INTO THE JRNL TITL 2 MECHANISM OF LYSOSOMAL 5' EXONUCLEASE-MEDIATED NUCLEIC ACID JRNL TITL 3 DEGRADATION. JRNL REF NUCLEIC ACIDS RES. V. 52 370 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 37994783 JRNL DOI 10.1093/NAR/GKAD1114 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 111276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7800 - 4.5700 0.98 7411 142 0.1419 0.1515 REMARK 3 2 4.5700 - 3.6300 0.99 7365 142 0.1220 0.1435 REMARK 3 3 3.6300 - 3.1700 0.97 7224 139 0.1443 0.1602 REMARK 3 4 3.1700 - 2.8800 0.99 7343 141 0.1513 0.1675 REMARK 3 5 2.8800 - 2.6700 1.00 7403 143 0.1594 0.2040 REMARK 3 6 2.6700 - 2.5100 1.00 7335 141 0.1681 0.2019 REMARK 3 7 2.5100 - 2.3900 0.99 7345 141 0.1742 0.2060 REMARK 3 8 2.3900 - 2.2800 0.98 7214 139 0.1898 0.2663 REMARK 3 9 2.2800 - 2.2000 0.99 7304 140 0.2035 0.2607 REMARK 3 10 2.2000 - 2.1200 0.99 7369 142 0.2248 0.2473 REMARK 3 11 2.1200 - 2.0500 1.00 7302 141 0.2479 0.2797 REMARK 3 12 2.0500 - 2.0000 1.00 7356 141 0.2758 0.2879 REMARK 3 13 2.0000 - 1.9400 0.99 7292 140 0.2993 0.3246 REMARK 3 14 1.9400 - 1.9000 0.99 7302 141 0.3492 0.3686 REMARK 3 15 1.9000 - 1.8500 0.90 6611 127 0.4161 0.4981 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : 0.989 NULL REMARK 3 CHIRALITY : 0.060 1132 REMARK 3 PLANARITY : 0.009 1240 REMARK 3 DIHEDRAL : 13.151 1116 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5178 -11.0277 22.1996 REMARK 3 T TENSOR REMARK 3 T11: 0.3993 T22: 0.3211 REMARK 3 T33: 0.3090 T12: 0.0658 REMARK 3 T13: -0.1027 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 3.4210 L22: 1.3824 REMARK 3 L33: 4.0271 L12: 0.5263 REMARK 3 L13: -3.3101 L23: -0.8834 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: 0.4507 S13: -0.0652 REMARK 3 S21: -0.1497 S22: -0.0061 S23: 0.2066 REMARK 3 S31: -0.2329 S32: -0.6716 S33: 0.0632 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9605 -1.5255 26.0805 REMARK 3 T TENSOR REMARK 3 T11: 0.4211 T22: 0.1863 REMARK 3 T33: 0.2213 T12: 0.0049 REMARK 3 T13: -0.0353 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.8811 L22: 1.5956 REMARK 3 L33: 1.7754 L12: -0.0049 REMARK 3 L13: 0.1297 L23: -0.0996 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.0135 S13: 0.2119 REMARK 3 S21: -0.0796 S22: -0.0278 S23: -0.0054 REMARK 3 S31: -0.5520 S32: 0.0603 S33: 0.0434 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2609 -11.9696 43.5013 REMARK 3 T TENSOR REMARK 3 T11: 0.3805 T22: 0.2980 REMARK 3 T33: 0.2141 T12: 0.0179 REMARK 3 T13: -0.0011 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 3.9571 L22: 1.8842 REMARK 3 L33: 1.1334 L12: 1.7793 REMARK 3 L13: 1.0326 L23: 0.3935 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: -0.2793 S13: 0.1098 REMARK 3 S21: 0.2441 S22: -0.0293 S23: -0.0028 REMARK 3 S31: -0.2444 S32: -0.0440 S33: 0.0925 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5155 -26.7590 29.8071 REMARK 3 T TENSOR REMARK 3 T11: 0.1958 T22: 0.1459 REMARK 3 T33: 0.1498 T12: 0.0193 REMARK 3 T13: -0.0355 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.1017 L22: 2.6244 REMARK 3 L33: 2.2595 L12: -0.4274 REMARK 3 L13: -0.5181 L23: 0.9843 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: -0.0388 S13: -0.1029 REMARK 3 S21: 0.0777 S22: -0.0219 S23: 0.0215 REMARK 3 S31: 0.0608 S32: -0.0514 S33: -0.0289 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 357 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4964 -23.5509 17.4555 REMARK 3 T TENSOR REMARK 3 T11: 0.2680 T22: 0.1664 REMARK 3 T33: 0.1800 T12: 0.0283 REMARK 3 T13: -0.0519 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.9815 L22: 1.6592 REMARK 3 L33: 1.7506 L12: -0.1581 REMARK 3 L13: -0.1221 L23: 0.1315 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: 0.1040 S13: -0.0417 REMARK 3 S21: -0.3284 S22: -0.0331 S23: 0.1220 REMARK 3 S31: 0.0113 S32: -0.0912 S33: 0.0312 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 470 THROUGH 493 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3689 -24.6205 3.5297 REMARK 3 T TENSOR REMARK 3 T11: 0.5787 T22: 0.2925 REMARK 3 T33: 0.2553 T12: 0.0483 REMARK 3 T13: 0.0201 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 7.0900 L22: 2.5964 REMARK 3 L33: 7.0242 L12: 0.8914 REMARK 3 L13: 0.1780 L23: -2.3856 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: 0.6341 S13: -0.1599 REMARK 3 S21: -0.8694 S22: -0.4357 S23: -0.3438 REMARK 3 S31: 0.3873 S32: 0.5278 S33: 0.3469 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9037 -73.8181 25.9484 REMARK 3 T TENSOR REMARK 3 T11: 0.3578 T22: 0.1507 REMARK 3 T33: 0.2542 T12: 0.0536 REMARK 3 T13: 0.0185 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.0794 L22: 1.4009 REMARK 3 L33: 3.3387 L12: 0.1630 REMARK 3 L13: 1.2480 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: 0.1546 S13: -0.2182 REMARK 3 S21: -0.1408 S22: 0.0090 S23: -0.1584 REMARK 3 S31: 0.4197 S32: 0.2127 S33: -0.0346 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 139 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9088 -78.5039 32.0562 REMARK 3 T TENSOR REMARK 3 T11: 0.4603 T22: 0.2498 REMARK 3 T33: 0.2822 T12: -0.0878 REMARK 3 T13: -0.0104 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.1569 L22: 3.4206 REMARK 3 L33: 2.9209 L12: -0.4975 REMARK 3 L13: -0.3172 L23: 0.9249 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.0836 S13: -0.3555 REMARK 3 S21: 0.0167 S22: -0.0271 S23: 0.2188 REMARK 3 S31: 0.7744 S32: -0.2894 S33: 0.0123 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9564 -66.5366 38.1169 REMARK 3 T TENSOR REMARK 3 T11: 0.3347 T22: 0.2389 REMARK 3 T33: 0.2319 T12: 0.0134 REMARK 3 T13: -0.0279 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.1583 L22: 1.3052 REMARK 3 L33: 0.8543 L12: 0.3670 REMARK 3 L13: 0.1316 L23: 0.2663 REMARK 3 S TENSOR REMARK 3 S11: 0.0705 S12: -0.1898 S13: -0.1095 REMARK 3 S21: 0.1284 S22: -0.0627 S23: -0.0907 REMARK 3 S31: 0.2655 S32: 0.0658 S33: -0.0069 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 307 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7606 -50.1055 26.9453 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: 0.1049 REMARK 3 T33: 0.1535 T12: -0.0006 REMARK 3 T13: 0.0350 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.8194 L22: 4.6371 REMARK 3 L33: 5.5130 L12: -1.4470 REMARK 3 L13: -0.6789 L23: 0.4306 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: -0.1168 S13: -0.1669 REMARK 3 S21: 0.2305 S22: -0.0157 S23: 0.3861 REMARK 3 S31: 0.1064 S32: -0.3674 S33: -0.0168 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 344 THROUGH 392 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5607 -45.3506 18.0392 REMARK 3 T TENSOR REMARK 3 T11: 0.3087 T22: 0.1744 REMARK 3 T33: 0.1803 T12: 0.0184 REMARK 3 T13: 0.0251 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 3.8685 L22: 3.8614 REMARK 3 L33: 3.6489 L12: 0.4581 REMARK 3 L13: 2.0577 L23: 2.1791 REMARK 3 S TENSOR REMARK 3 S11: -0.0839 S12: 0.2097 S13: 0.2858 REMARK 3 S21: -0.3079 S22: -0.0010 S23: -0.1523 REMARK 3 S31: -0.2531 S32: 0.1297 S33: 0.0583 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 393 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4358 -59.1159 17.5598 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.1406 REMARK 3 T33: 0.1818 T12: 0.0213 REMARK 3 T13: 0.0326 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.6468 L22: 1.4740 REMARK 3 L33: 2.8706 L12: 0.1584 REMARK 3 L13: 0.2991 L23: 0.1815 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: 0.1370 S13: -0.0457 REMARK 3 S21: -0.3065 S22: -0.0029 S23: -0.0461 REMARK 3 S31: 0.0801 S32: 0.0410 S33: 0.0060 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Q1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98141 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111313 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 48.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.050 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 0.02 M NAI, 0.9 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.72600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 61 REMARK 465 TYR A 62 REMARK 465 GLY A 63 REMARK 465 ASP A 64 REMARK 465 LEU A 65 REMARK 465 HIS A 66 REMARK 465 LEU A 67 REMARK 465 PHE A 68 REMARK 465 GLY A 69 REMARK 465 PRO A 70 REMARK 465 ASN A 71 REMARK 465 ASN A 97 REMARK 465 ALA A 98 REMARK 465 GLU B 61 REMARK 465 TYR B 62 REMARK 465 GLY B 63 REMARK 465 ASP B 64 REMARK 465 LEU B 65 REMARK 465 HIS B 66 REMARK 465 LEU B 67 REMARK 465 PHE B 68 REMARK 465 GLY B 69 REMARK 465 PRO B 70 REMARK 465 ASN B 71 REMARK 465 SER B 99 REMARK 465 THR B 100 REMARK 465 GLN B 493 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 220 CG REMARK 470 GLN A 493 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 613 O HOH A 756 1.99 REMARK 500 O HOH B 778 O HOH B 1078 2.04 REMARK 500 OE2 GLU A 371 O HOH A 601 2.08 REMARK 500 O HOH B 988 O HOH B 1029 2.08 REMARK 500 O HOH A 708 O HOH A 958 2.10 REMARK 500 N GLY A 484 O HOH A 602 2.10 REMARK 500 OE2 GLU B 249 O HOH B 601 2.11 REMARK 500 O PRO B 171 O HOH B 602 2.14 REMARK 500 O3 SO4 A 514 O HOH A 603 2.16 REMARK 500 ND2 ASN A 236 O5 NAG D 1 2.17 REMARK 500 O GLU A 146 O HOH A 604 2.18 REMARK 500 O HOH B 845 O HOH B 921 2.19 REMARK 500 O HOH A 842 O HOH A 1001 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 686 O HOH B 775 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 219 CG - SD - CE ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 -38.60 -133.45 REMARK 500 SER A 118 -37.21 -134.26 REMARK 500 THR A 210 -46.59 -136.73 REMARK 500 SER A 320 -56.70 -125.22 REMARK 500 SER A 320 -57.42 -124.86 REMARK 500 ASP A 392 80.54 -154.19 REMARK 500 TRP A 433 70.67 -106.10 REMARK 500 GLU A 440 -33.15 -131.24 REMARK 500 THR B 210 -44.34 -135.70 REMARK 500 SER B 320 -57.59 -129.68 REMARK 500 SER B 320 -56.28 -130.35 REMARK 500 ASP B 392 78.81 -155.68 REMARK 500 TRP B 433 70.80 -100.67 REMARK 500 GLU B 440 -32.12 -133.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 319 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1112 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1113 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1115 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1116 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A1118 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH A1121 DISTANCE = 9.72 ANGSTROMS REMARK 525 HOH B1102 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B1103 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B1105 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B1106 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH B1109 DISTANCE = 15.58 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PST A 501 REMARK 610 PST A 502 REMARK 610 PST B 502 REMARK 610 PST B 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 516 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 438 O REMARK 620 2 HOH A 668 O 96.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 514 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 438 O REMARK 620 2 HOH B 734 O 99.2 REMARK 620 N 1 DBREF 8Q1X A 61 490 UNP Q8IV08 PLD3_HUMAN 61 490 DBREF 8Q1X B 61 490 UNP Q8IV08 PLD3_HUMAN 61 490 SEQADV 8Q1X ALA A 491 UNP Q8IV08 EXPRESSION TAG SEQADV 8Q1X ALA A 492 UNP Q8IV08 EXPRESSION TAG SEQADV 8Q1X GLN A 493 UNP Q8IV08 EXPRESSION TAG SEQADV 8Q1X ALA B 491 UNP Q8IV08 EXPRESSION TAG SEQADV 8Q1X ALA B 492 UNP Q8IV08 EXPRESSION TAG SEQADV 8Q1X GLN B 493 UNP Q8IV08 EXPRESSION TAG SEQRES 1 A 433 GLU TYR GLY ASP LEU HIS LEU PHE GLY PRO ASN GLN ARG SEQRES 2 A 433 PRO ALA PRO CYS TYR ASP PRO CYS GLU ALA VAL LEU VAL SEQRES 3 A 433 GLU SER ILE PRO GLU GLY LEU ASP PHE PRO ASN ALA SER SEQRES 4 A 433 THR GLY ASN PRO SER THR SER GLN ALA TRP LEU GLY LEU SEQRES 5 A 433 LEU ALA GLY ALA HIS SER SER LEU ASP ILE ALA SER PHE SEQRES 6 A 433 TYR TRP THR LEU THR ASN ASN ASP THR HIS THR GLN GLU SEQRES 7 A 433 PRO SER ALA GLN GLN GLY GLU GLU VAL LEU ARG GLN LEU SEQRES 8 A 433 GLN THR LEU ALA PRO LYS GLY VAL ASN VAL ARG ILE ALA SEQRES 9 A 433 VAL SER LYS PRO SER GLY PRO GLN PRO GLN ALA ASP LEU SEQRES 10 A 433 GLN ALA LEU LEU GLN SER GLY ALA GLN VAL ARG MET VAL SEQRES 11 A 433 ASP MET GLN LYS LEU THR HIS GLY VAL LEU HIS THR LYS SEQRES 12 A 433 PHE TRP VAL VAL ASP GLN THR HIS PHE TYR LEU GLY SER SEQRES 13 A 433 ALA ASN MET ASP TRP ARG SER LEU THR GLN VAL LYS GLU SEQRES 14 A 433 LEU GLY VAL VAL MET TYR ASN CYS SER CYS LEU ALA ARG SEQRES 15 A 433 ASP LEU THR LYS ILE PHE GLU ALA TYR TRP PHE LEU GLY SEQRES 16 A 433 GLN ALA GLY SER SER ILE PRO SER THR TRP PRO ARG PHE SEQRES 17 A 433 TYR ASP THR ARG TYR ASN GLN GLU THR PRO MET GLU ILE SEQRES 18 A 433 CYS LEU ASN GLY THR PRO ALA LEU ALA TYR LEU ALA SER SEQRES 19 A 433 ALA PRO PRO PRO LEU OCS PRO SER GLY ARG THR PRO ASP SEQRES 20 A 433 LEU LYS ALA LEU LEU ASN VAL VAL ASP ASN ALA ARG SER SEQRES 21 A 433 PHE ILE TYR VAL ALA VAL MET ASN TYR LEU PRO THR LEU SEQRES 22 A 433 GLU PHE SER HIS PRO HIS ARG PHE TRP PRO ALA ILE ASP SEQRES 23 A 433 ASP GLY LEU ARG ARG ALA THR TYR GLU ARG GLY VAL LYS SEQRES 24 A 433 VAL ARG LEU LEU ILE SER CYS TRP GLY HIS SER GLU PRO SEQRES 25 A 433 SER MET ARG ALA PHE LEU LEU SER LEU ALA ALA LEU ARG SEQRES 26 A 433 ASP ASN HIS THR HIS SER ASP ILE GLN VAL LYS LEU PHE SEQRES 27 A 433 VAL VAL PRO ALA ASP GLU ALA GLN ALA ARG ILE PRO TYR SEQRES 28 A 433 ALA ARG VAL ASN HIS ASN LYS TYR MET VAL THR GLU ARG SEQRES 29 A 433 ALA THR TYR ILE GLY THR SER ASN TRP SER GLY ASN TYR SEQRES 30 A 433 PHE THR GLU THR ALA GLY THR SER LEU LEU VAL THR GLN SEQRES 31 A 433 ASN GLY ARG GLY GLY LEU ARG SER GLN LEU GLU ALA ILE SEQRES 32 A 433 PHE LEU ARG ASP TRP ASP SER PRO TYR SER HIS ASP LEU SEQRES 33 A 433 ASP THR SER ALA ASP SER VAL GLY ASN ALA CYS ARG LEU SEQRES 34 A 433 LEU ALA ALA GLN SEQRES 1 B 433 GLU TYR GLY ASP LEU HIS LEU PHE GLY PRO ASN GLN ARG SEQRES 2 B 433 PRO ALA PRO CYS TYR ASP PRO CYS GLU ALA VAL LEU VAL SEQRES 3 B 433 GLU SER ILE PRO GLU GLY LEU ASP PHE PRO ASN ALA SER SEQRES 4 B 433 THR GLY ASN PRO SER THR SER GLN ALA TRP LEU GLY LEU SEQRES 5 B 433 LEU ALA GLY ALA HIS SER SER LEU ASP ILE ALA SER PHE SEQRES 6 B 433 TYR TRP THR LEU THR ASN ASN ASP THR HIS THR GLN GLU SEQRES 7 B 433 PRO SER ALA GLN GLN GLY GLU GLU VAL LEU ARG GLN LEU SEQRES 8 B 433 GLN THR LEU ALA PRO LYS GLY VAL ASN VAL ARG ILE ALA SEQRES 9 B 433 VAL SER LYS PRO SER GLY PRO GLN PRO GLN ALA ASP LEU SEQRES 10 B 433 GLN ALA LEU LEU GLN SER GLY ALA GLN VAL ARG MET VAL SEQRES 11 B 433 ASP MET GLN LYS LEU THR HIS GLY VAL LEU HIS THR LYS SEQRES 12 B 433 PHE TRP VAL VAL ASP GLN THR HIS PHE TYR LEU GLY SER SEQRES 13 B 433 ALA ASN MET ASP TRP ARG SER LEU THR GLN VAL LYS GLU SEQRES 14 B 433 LEU GLY VAL VAL MET TYR ASN CYS SER CYS LEU ALA ARG SEQRES 15 B 433 ASP LEU THR LYS ILE PHE GLU ALA TYR TRP PHE LEU GLY SEQRES 16 B 433 GLN ALA GLY SER SER ILE PRO SER THR TRP PRO ARG PHE SEQRES 17 B 433 TYR ASP THR ARG TYR ASN GLN GLU THR PRO MET GLU ILE SEQRES 18 B 433 CYS LEU ASN GLY THR PRO ALA LEU ALA TYR LEU ALA SER SEQRES 19 B 433 ALA PRO PRO PRO LEU OCS PRO SER GLY ARG THR PRO ASP SEQRES 20 B 433 LEU LYS ALA LEU LEU ASN VAL VAL ASP ASN ALA ARG SER SEQRES 21 B 433 PHE ILE TYR VAL ALA VAL MET ASN TYR LEU PRO THR LEU SEQRES 22 B 433 GLU PHE SER HIS PRO HIS ARG PHE TRP PRO ALA ILE ASP SEQRES 23 B 433 ASP GLY LEU ARG ARG ALA THR TYR GLU ARG GLY VAL LYS SEQRES 24 B 433 VAL ARG LEU LEU ILE SER CYS TRP GLY HIS SER GLU PRO SEQRES 25 B 433 SER MET ARG ALA PHE LEU LEU SER LEU ALA ALA LEU ARG SEQRES 26 B 433 ASP ASN HIS THR HIS SER ASP ILE GLN VAL LYS LEU PHE SEQRES 27 B 433 VAL VAL PRO ALA ASP GLU ALA GLN ALA ARG ILE PRO TYR SEQRES 28 B 433 ALA ARG VAL ASN HIS ASN LYS TYR MET VAL THR GLU ARG SEQRES 29 B 433 ALA THR TYR ILE GLY THR SER ASN TRP SER GLY ASN TYR SEQRES 30 B 433 PHE THR GLU THR ALA GLY THR SER LEU LEU VAL THR GLN SEQRES 31 B 433 ASN GLY ARG GLY GLY LEU ARG SER GLN LEU GLU ALA ILE SEQRES 32 B 433 PHE LEU ARG ASP TRP ASP SER PRO TYR SER HIS ASP LEU SEQRES 33 B 433 ASP THR SER ALA ASP SER VAL GLY ASN ALA CYS ARG LEU SEQRES 34 B 433 LEU ALA ALA GLN MODRES 8Q1X OCS A 300 CYS MODIFIED RESIDUE MODRES 8Q1X OCS B 300 CYS MODIFIED RESIDUE HET OCS A 300 9 HET OCS B 300 9 HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET NAG D 1 28 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET MAN E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET MAN E 6 11 HET NAG F 1 14 HET NAG F 2 14 HET PST A 501 17 HET PST A 502 4 HET PO4 A 503 5 HET PO4 A 504 5 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET MN A 513 1 HET SO4 A 514 5 HET SO4 A 515 5 HET MG A 516 1 HET EDO B 501 4 HET PST B 502 17 HET PST B 503 4 HET PO4 B 504 5 HET EDO B 505 4 HET EDO B 506 4 HET EDO B 507 4 HET EDO B 508 4 HET EDO B 509 4 HET EDO B 510 4 HET MN B 511 1 HET SO4 B 512 5 HET SO4 B 513 5 HET MG B 514 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM PST THYMIDINE-5'-THIOPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 MAN 8(C6 H12 O6) FORMUL 7 PST 4(C10 H15 N2 O7 P S) FORMUL 9 PO4 3(O4 P 3-) FORMUL 11 EDO 15(C2 H6 O2) FORMUL 19 MN 2(MN 2+) FORMUL 20 SO4 4(O4 S 2-) FORMUL 22 MG 2(MG 2+) FORMUL 37 HOH *1034(H2 O) HELIX 1 AA1 SER A 104 ALA A 116 1 13 HELIX 2 AA2 THR A 130 HIS A 135 1 6 HELIX 3 AA3 GLU A 138 SER A 140 5 3 HELIX 4 AA4 ALA A 141 GLN A 152 1 12 HELIX 5 AA5 THR A 153 GLY A 158 5 6 HELIX 6 AA6 GLN A 174 GLY A 184 1 11 HELIX 7 AA7 ASP A 191 HIS A 197 1 7 HELIX 8 AA8 TRP A 221 GLN A 226 1 6 HELIX 9 AA9 CYS A 237 GLY A 255 1 19 HELIX 10 AB1 PRO A 266 ASP A 270 5 5 HELIX 11 AB2 PRO A 296 OCS A 300 5 5 HELIX 12 AB3 PRO A 306 ALA A 318 1 13 HELIX 13 AB4 PRO A 343 GLY A 357 1 15 HELIX 14 AB5 SER A 373 ALA A 383 1 11 HELIX 15 AB6 ASP A 403 ARG A 408 1 6 HELIX 16 AB7 GLY A 435 GLU A 440 1 6 HELIX 17 AB8 GLY A 455 SER A 470 1 16 HELIX 18 AB9 SER A 479 VAL A 483 5 5 HELIX 19 AC1 SER B 104 ALA B 116 1 13 HELIX 20 AC2 THR B 130 HIS B 135 1 6 HELIX 21 AC3 GLU B 138 SER B 140 5 3 HELIX 22 AC4 ALA B 141 GLN B 152 1 12 HELIX 23 AC5 GLN B 174 GLY B 184 1 11 HELIX 24 AC6 ASP B 191 HIS B 197 1 7 HELIX 25 AC7 TRP B 221 GLN B 226 1 6 HELIX 26 AC8 CYS B 237 GLY B 255 1 19 HELIX 27 AC9 PRO B 266 ASP B 270 5 5 HELIX 28 AD1 PRO B 296 OCS B 300 5 5 HELIX 29 AD2 PRO B 306 ALA B 318 1 13 HELIX 30 AD3 PRO B 343 GLY B 357 1 15 HELIX 31 AD4 SER B 373 ALA B 383 1 11 HELIX 32 AD5 ASP B 403 ARG B 408 1 6 HELIX 33 AD6 GLY B 435 GLU B 440 1 6 HELIX 34 AD7 GLY B 454 SER B 470 1 17 SHEET 1 AA116 GLN A 186 VAL A 190 0 SHEET 2 AA116 ASN A 160 SER A 166 1 N VAL A 161 O GLN A 186 SHEET 3 AA116 SER A 119 SER A 124 1 N LEU A 120 O ASN A 160 SHEET 4 AA116 PHE A 204 VAL A 207 -1 O VAL A 206 N ASP A 121 SHEET 5 AA116 HIS A 211 GLY A 215 -1 O HIS A 211 N VAL A 207 SHEET 6 AA116 GLU A 229 TYR A 235 -1 O VAL A 232 N LEU A 214 SHEET 7 AA116 PRO A 80 SER A 88 -1 N GLU A 82 O TYR A 235 SHEET 8 AA116 MET A 279 LEU A 283 1 N CYS A 282 O CYS A 81 SHEET 9 AA116 THR A 286 ALA A 295 -1 O ALA A 290 N MET A 279 SHEET 10 AA116 GLY A 443 THR A 449 -1 O THR A 449 N LEU A 289 SHEET 11 AA116 THR A 426 GLY A 429 -1 N ILE A 428 O LEU A 446 SHEET 12 AA116 LYS A 418 THR A 422 -1 N MET A 420 O TYR A 427 SHEET 13 AA116 PHE A 321 VAL A 326 -1 N TYR A 323 O VAL A 421 SHEET 14 AA116 LYS A 359 SER A 365 1 O LEU A 363 N VAL A 324 SHEET 15 AA116 SER A 391 PHE A 398 1 O GLN A 394 N LEU A 362 SHEET 16 AA116 ARG A 385 ASP A 386 -1 N ASP A 386 O SER A 391 SHEET 1 AA216 GLN A 186 VAL A 190 0 SHEET 2 AA216 ASN A 160 SER A 166 1 N VAL A 161 O GLN A 186 SHEET 3 AA216 SER A 119 SER A 124 1 N LEU A 120 O ASN A 160 SHEET 4 AA216 PHE A 204 VAL A 207 -1 O VAL A 206 N ASP A 121 SHEET 5 AA216 HIS A 211 GLY A 215 -1 O HIS A 211 N VAL A 207 SHEET 6 AA216 GLU A 229 TYR A 235 -1 O VAL A 232 N LEU A 214 SHEET 7 AA216 PRO A 80 SER A 88 -1 N GLU A 82 O TYR A 235 SHEET 8 AA216 MET A 279 LEU A 283 1 N CYS A 282 O CYS A 81 SHEET 9 AA216 THR A 286 ALA A 295 -1 O ALA A 290 N MET A 279 SHEET 10 AA216 GLY A 443 THR A 449 -1 O THR A 449 N LEU A 289 SHEET 11 AA216 THR A 426 GLY A 429 -1 N ILE A 428 O LEU A 446 SHEET 12 AA216 LYS A 418 THR A 422 -1 N MET A 420 O TYR A 427 SHEET 13 AA216 PHE A 321 VAL A 326 -1 N TYR A 323 O VAL A 421 SHEET 14 AA216 LYS A 359 SER A 365 1 O LEU A 363 N VAL A 324 SHEET 15 AA216 SER A 391 PHE A 398 1 O GLN A 394 N LEU A 362 SHEET 16 AA216 SER A 473 HIS A 474 -1 O HIS A 474 N LEU A 397 SHEET 1 AA3 2 TRP A 127 THR A 128 0 SHEET 2 AA3 2 MET A 219 ASP A 220 1 O MET A 219 N THR A 128 SHEET 1 AA4 2 THR A 332 LEU A 333 0 SHEET 2 AA4 2 ARG A 340 PHE A 341 -1 O ARG A 340 N LEU A 333 SHEET 1 AA516 GLN B 186 VAL B 190 0 SHEET 2 AA516 ASN B 160 SER B 166 1 N ILE B 163 O ARG B 188 SHEET 3 AA516 SER B 119 SER B 124 1 N ILE B 122 O ALA B 164 SHEET 4 AA516 PHE B 204 VAL B 207 -1 O VAL B 206 N ASP B 121 SHEET 5 AA516 HIS B 211 GLY B 215 -1 O HIS B 211 N VAL B 207 SHEET 6 AA516 GLU B 229 TYR B 235 -1 O VAL B 232 N LEU B 214 SHEET 7 AA516 PRO B 80 SER B 88 -1 N GLU B 82 O TYR B 235 SHEET 8 AA516 MET B 279 LEU B 283 1 N CYS B 282 O CYS B 81 SHEET 9 AA516 THR B 286 ALA B 295 -1 O ALA B 290 N MET B 279 SHEET 10 AA516 GLY B 443 THR B 449 -1 O THR B 449 N LEU B 289 SHEET 11 AA516 ALA B 425 GLY B 429 -1 N THR B 426 O VAL B 448 SHEET 12 AA516 LYS B 418 THR B 422 -1 N MET B 420 O TYR B 427 SHEET 13 AA516 PHE B 321 VAL B 326 -1 N TYR B 323 O VAL B 421 SHEET 14 AA516 LYS B 359 SER B 365 1 O LEU B 363 N VAL B 324 SHEET 15 AA516 SER B 391 PHE B 398 1 O GLN B 394 N LEU B 362 SHEET 16 AA516 ARG B 385 ASP B 386 -1 N ASP B 386 O SER B 391 SHEET 1 AA616 GLN B 186 VAL B 190 0 SHEET 2 AA616 ASN B 160 SER B 166 1 N ILE B 163 O ARG B 188 SHEET 3 AA616 SER B 119 SER B 124 1 N ILE B 122 O ALA B 164 SHEET 4 AA616 PHE B 204 VAL B 207 -1 O VAL B 206 N ASP B 121 SHEET 5 AA616 HIS B 211 GLY B 215 -1 O HIS B 211 N VAL B 207 SHEET 6 AA616 GLU B 229 TYR B 235 -1 O VAL B 232 N LEU B 214 SHEET 7 AA616 PRO B 80 SER B 88 -1 N GLU B 82 O TYR B 235 SHEET 8 AA616 MET B 279 LEU B 283 1 N CYS B 282 O CYS B 81 SHEET 9 AA616 THR B 286 ALA B 295 -1 O ALA B 290 N MET B 279 SHEET 10 AA616 GLY B 443 THR B 449 -1 O THR B 449 N LEU B 289 SHEET 11 AA616 ALA B 425 GLY B 429 -1 N THR B 426 O VAL B 448 SHEET 12 AA616 LYS B 418 THR B 422 -1 N MET B 420 O TYR B 427 SHEET 13 AA616 PHE B 321 VAL B 326 -1 N TYR B 323 O VAL B 421 SHEET 14 AA616 LYS B 359 SER B 365 1 O LEU B 363 N VAL B 324 SHEET 15 AA616 SER B 391 PHE B 398 1 O GLN B 394 N LEU B 362 SHEET 16 AA616 SER B 473 ASP B 475 -1 O HIS B 474 N LEU B 397 SHEET 1 AA7 2 TRP B 127 THR B 128 0 SHEET 2 AA7 2 MET B 219 ASP B 220 1 O MET B 219 N THR B 128 SHEET 1 AA8 2 TYR B 329 LEU B 330 0 SHEET 2 AA8 2 TRP B 433 SER B 434 1 O TRP B 433 N LEU B 330 SHEET 1 AA9 2 THR B 332 LEU B 333 0 SHEET 2 AA9 2 ARG B 340 PHE B 341 -1 O ARG B 340 N LEU B 333 SSBOND 1 CYS A 77 CYS A 239 1555 1555 2.07 SSBOND 2 CYS A 81 CYS A 237 1555 1555 2.03 SSBOND 3 CYS A 366 CYS A 487 1555 1555 2.06 SSBOND 4 CYS B 77 CYS B 239 1555 1555 2.05 SSBOND 5 CYS B 81 CYS B 237 1555 1555 2.04 SSBOND 6 CYS B 366 CYS B 487 1555 1555 2.07 LINK ND2 ASN A 236 C1 ANAG D 1 1555 1555 1.46 LINK ND2 ASN A 236 C1 BNAG D 1 1555 1555 1.43 LINK ND2 ASN A 284 C1 NAG C 1 1555 1555 1.43 LINK C LEU A 299 N OCS A 300 1555 1555 1.34 LINK C OCS A 300 N PRO A 301 1555 1555 1.35 LINK O3' PST A 501 P PST A 502 1555 1555 1.64 LINK ND2 ASN B 236 C1 NAG F 1 1555 1555 1.47 LINK ND2 ASN B 284 C1 NAG E 1 1555 1555 1.44 LINK C LEU B 299 N OCS B 300 1555 1555 1.34 LINK C OCS B 300 N PRO B 301 1555 1555 1.34 LINK O3' PST B 502 P PST B 503 1555 1555 1.63 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.45 LINK O6 MAN C 3 C1 MAN C 4 1555 1555 1.45 LINK O3 MAN C 3 C1 MAN C 6 1555 1555 1.45 LINK O6 MAN C 4 C1 MAN C 5 1555 1555 1.45 LINK O4 ANAG D 1 C1 NAG D 2 1555 1555 1.47 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 MAN E 3 1555 1555 1.45 LINK O6 MAN E 3 C1 MAN E 4 1555 1555 1.45 LINK O3 MAN E 3 C1 MAN E 6 1555 1555 1.45 LINK O6 MAN E 4 C1 MAN E 5 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O PHE A 438 MG MG A 516 1555 1555 2.70 LINK MN MN A 513 O HOH A1038 1555 1555 2.40 LINK MG MG A 516 O HOH A 668 1555 1555 2.59 LINK O PHE B 438 MG MG B 514 1555 1555 2.81 LINK MG MG B 514 O HOH B 734 1555 1555 2.51 CISPEP 1 ALA A 295 PRO A 296 0 -0.43 CISPEP 2 HIS A 337 PRO A 338 0 -1.59 CISPEP 3 ALA B 295 PRO B 296 0 -1.73 CISPEP 4 HIS B 337 PRO B 338 0 2.50 CRYST1 60.535 115.452 101.335 90.00 106.62 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016519 0.000000 0.004931 0.00000 SCALE2 0.000000 0.008662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010299 0.00000