HEADER LYASE 08-AUG-23 8Q58 TITLE CRYSTAL STRUCTURE OF METAL-DEPENDENT CLASSII SULFOFRUCTOSEPHOSPHATE TITLE 2 ALDOLASE (SFPA) FROM HAFNIA PARALVEI HPSQIA-ZN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAFNIA PARALVEI; SOURCE 3 ORGANISM_TAXID: 546367; SOURCE 4 GENE: KBAY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS METAL-DEPENDENT, ALDOLASE, SULFOQUINOVOSE, SULFOFRUCTOSE PHOSPHATE, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SHARMA,G.J.DAVIES REVDAT 3 22-NOV-23 8Q58 1 JRNL REVDAT 2 01-NOV-23 8Q58 1 REMARK REVDAT 1 25-OCT-23 8Q58 0 JRNL AUTH M.SHARMA,A.KAUR,N.MADIEDO SOLER,J.P.LINGFORD,R.EPA, JRNL AUTH 2 E.D.GODDARD-BORGER,G.J.DAVIES,S.J.WILLIAMS JRNL TITL DEFINING THE MOLECULAR ARCHITECTURE, METAL DEPENDENCE, AND JRNL TITL 2 DISTRIBUTION OF METAL-DEPENDENT CLASS II JRNL TITL 3 SULFOFRUCTOSE-1-PHOSPHATE ALDOLASES. JRNL REF J.BIOL.CHEM. V. 299 05338 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37838169 JRNL DOI 10.1016/J.JBC.2023.105338 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1879 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2600 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.67000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -1.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.942 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2077 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1994 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2815 ; 1.658 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4581 ; 0.570 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 6.397 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ; 8.132 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;14.306 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2449 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 457 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1083 ; 3.204 ; 3.265 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1083 ; 3.201 ; 3.265 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1352 ; 4.275 ; 5.844 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1353 ; 4.277 ; 5.847 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 994 ; 4.131 ; 3.537 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 995 ; 4.129 ; 3.539 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1457 ; 5.894 ; 6.385 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2318 ; 6.735 ;30.910 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2301 ; 6.712 ;30.750 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8Q58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292131462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 63.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE DIBASIC REMARK 280 MONOHYDRATE AND 20% W/V PEG (POLYETHYLENE GLYCOL) 3,350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.16600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.24500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.40250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.16600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.24500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.40250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.16600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.24500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.40250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.16600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.24500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.40250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 60.33200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 88.49000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 60.33200 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 88.49000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 139 REMARK 465 GLY A 140 REMARK 465 THR A 141 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASP A 144 REMARK 465 ILE A 145 REMARK 465 SER A 146 REMARK 465 VAL A 147 REMARK 465 ASP A 148 REMARK 465 GLU A 149 REMARK 465 LYS A 150 REMARK 465 ASP A 151 REMARK 465 GLY A 181 REMARK 465 VAL A 182 REMARK 465 TYR A 183 REMARK 465 LYS A 184 REMARK 465 GLN A 185 REMARK 465 GLU A 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 GLU A 88 CD OE1 OE2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LEU A 153 CG CD1 CD2 REMARK 470 PRO A 187 CG CD REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 GLU A 199 CD OE1 OE2 REMARK 470 GLN A 241 CD OE1 NE2 REMARK 470 THR A 248 OG1 CG2 REMARK 470 ASN A 249 CG OD1 ND2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LEU A 285 CG CD1 CD2 REMARK 470 GLN A 286 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 36.51 -76.45 REMARK 500 ASN A 27 -165.98 -173.56 REMARK 500 ASP A 232 -69.95 -136.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 264 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 GLU A 134 OE1 107.0 REMARK 620 3 HIS A 180 NE2 117.2 133.4 REMARK 620 4 HIS A 208 ND1 92.7 96.0 95.8 REMARK 620 5 HOH A 434 O 85.6 77.3 91.7 172.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 83 NE2 18.8 REMARK 620 N 1 DBREF1 8Q58 A 1 287 UNP A0A2A2MA06_9GAMM DBREF2 8Q58 A A0A2A2MA06 1 287 SEQADV 8Q58 MET A -19 UNP A0A2A2MA0 INITIATING METHIONINE SEQADV 8Q58 GLY A -18 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 SER A -17 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 SER A -16 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -15 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -14 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -13 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -12 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -11 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -10 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 SER A -9 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 SER A -8 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 GLY A -7 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 LEU A -6 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 VAL A -5 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 PRO A -4 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 ARG A -3 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 GLY A -2 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 SER A -1 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A 0 UNP A0A2A2MA0 EXPRESSION TAG SEQRES 1 A 307 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 307 LEU VAL PRO ARG GLY SER HIS MET PRO TYR VAL SER GLY SEQRES 3 A 307 LYS THR MET ILE GLN GLN ALA TRP LYS HIS GLY TYR ALA SEQRES 4 A 307 ILE GLY ALA PHE SER ALA HIS ASN ALA GLU THR VAL ARG SEQRES 5 A 307 ALA ILE LEU LEU ALA ALA GLN GLU GLU GLN SER PRO VAL SEQRES 6 A 307 MET ILE GLN VAL GLY GLN LYS VAL ILE SER VAL MET GLY SEQRES 7 A 307 LEU LYS PRO MET LYS GLU ILE ILE ASP ALA PHE MET HIS SEQRES 8 A 307 ASP ILE THR VAL PRO VAL CYS ILE HIS LEU ASP HIS SER SEQRES 9 A 307 ARG SER PHE GLU GLN THR MET GLN ALA ILE GLN CYS GLY SEQRES 10 A 307 PHE GLN SER VAL MET PHE ASP GLY SER HIS LEU SER PHE SEQRES 11 A 307 GLU GLU ASN VAL ARG ILE THR ARG ALA ALA SER GLU VAL SEQRES 12 A 307 ALA HIS ALA LEU ASN ILE GLY MET GLU GLY GLU ILE GLY SEQRES 13 A 307 LYS ILE GLY GLY THR GLU ASP ASP ILE SER VAL ASP GLU SEQRES 14 A 307 LYS ASP ALA LEU ILE THR SER CYS ASP GLU ALA LEU ARG SEQRES 15 A 307 PHE SER GLU GLY THR ASP VAL ASP TYR LEU ALA VAL SER SEQRES 16 A 307 ILE GLY THR ALA HIS GLY VAL TYR LYS GLN GLU PRO LYS SEQRES 17 A 307 LEU ALA PHE GLY ARG LEU GLN GLU ILE ARG GLU ILE VAL SEQRES 18 A 307 LYS LYS PRO ILE VAL LEU HIS GLY GLY SER GLY VAL PRO SEQRES 19 A 307 ASP ASP GLN ILE ARG GLN ALA ILE ALA LEU GLY VAL ALA SEQRES 20 A 307 LYS VAL ASN VAL ASP THR GLU LEU ARG GLN ALA PHE THR SEQRES 21 A 307 GLN GLY LEU CYS GLU VAL LEU THR ASN ASP PRO GLU GLU SEQRES 22 A 307 TYR ALA LEU ALA VAL SER LEU GLY HIS GLY ARG ASP VAL SEQRES 23 A 307 MET LYS GLU LYS VAL ILE GLU LYS ILE ARG LEU PHE GLY SEQRES 24 A 307 SER ASN GLY LYS ALA LEU GLN PHE HET ZN A 301 1 HET ZN A 302 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *122(H2 O) HELIX 1 AA1 SER A 5 HIS A 16 1 12 HELIX 2 AA2 ASN A 27 GLU A 41 1 15 HELIX 3 AA3 GLY A 50 GLY A 58 1 9 HELIX 4 AA4 GLY A 58 MET A 70 1 13 HELIX 5 AA5 SER A 86 CYS A 96 1 11 HELIX 6 AA6 SER A 109 LEU A 127 1 19 HELIX 7 AA7 SER A 156 ASP A 168 1 13 HELIX 8 AA8 ALA A 190 LYS A 202 1 13 HELIX 9 AA9 GLY A 209 VAL A 213 5 5 HELIX 10 AB1 PRO A 214 LEU A 224 1 11 HELIX 11 AB2 ASP A 232 ASP A 250 1 19 HELIX 12 AB3 ALA A 255 GLY A 279 1 25 HELIX 13 AB4 GLY A 282 PHE A 287 5 6 SHEET 1 AA1 9 ILE A 20 SER A 24 0 SHEET 2 AA1 9 VAL A 45 VAL A 49 1 O GLN A 48 N PHE A 23 SHEET 3 AA1 9 VAL A 77 SER A 84 1 O HIS A 80 N ILE A 47 SHEET 4 AA1 9 SER A 100 PHE A 103 1 O SER A 100 N LEU A 81 SHEET 5 AA1 9 GLY A 130 GLU A 134 1 O GLU A 132 N VAL A 101 SHEET 6 AA1 9 TYR A 171 ALA A 173 1 O ALA A 173 N GLY A 133 SHEET 7 AA1 9 ILE A 205 LEU A 207 1 O VAL A 206 N LEU A 172 SHEET 8 AA1 9 VAL A 226 VAL A 231 1 O LYS A 228 N LEU A 207 SHEET 9 AA1 9 ILE A 20 SER A 24 1 N SER A 24 O VAL A 231 LINK NE2AHIS A 83 ZN ZN A 301 1555 1555 2.11 LINK NE2AHIS A 83 ZN ZN A 302 1555 1555 2.64 LINK NE2BHIS A 83 ZN ZN A 302 1555 1555 1.85 LINK OE1 GLU A 134 ZN ZN A 301 1555 1555 1.95 LINK NE2 HIS A 180 ZN ZN A 301 1555 1555 2.18 LINK ND1AHIS A 208 ZN ZN A 301 1555 1555 2.20 LINK ZN ZN A 301 O HOH A 434 1555 1555 2.60 CRYST1 60.332 88.490 126.805 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016575 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007886 0.00000