HEADER LYASE 08-AUG-23 8Q5A TITLE CRYSTAL STRUCTURE OF METAL-DEPENDENT CLASS II SULFOFRUCTOSEPHOSPHATE TITLE 2 ALDOLASE FROM HAFNIA PARALVEI HPSQIA-ZN IN COMPLEX WITH TITLE 3 DIHYDROXYACETONE PHOSPHATE (DHAP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAFNIA PARALVEI; SOURCE 3 ORGANISM_TAXID: 546367; SOURCE 4 GENE: KBAY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A (+) KEYWDS METAL-DEPENDENT, ALDOLASE, SULFOQUINOVOSE, SULFOFRUCTOSE PHOSPHATE, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SHARMA,G.J.DAVIES REVDAT 3 22-NOV-23 8Q5A 1 JRNL REVDAT 2 01-NOV-23 8Q5A 1 REMARK REVDAT 1 25-OCT-23 8Q5A 0 JRNL AUTH M.SHARMA,A.KAUR,N.MADIEDO SOLER,J.P.LINGFORD,R.EPA, JRNL AUTH 2 E.D.GODDARD-BORGER,G.J.DAVIES,S.J.WILLIAMS JRNL TITL DEFINING THE MOLECULAR ARCHITECTURE, METAL DEPENDENCE, AND JRNL TITL 2 DISTRIBUTION OF METAL-DEPENDENT CLASS II JRNL TITL 3 SULFOFRUCTOSE-1-PHOSPHATE ALDOLASES. JRNL REF J.BIOL.CHEM. V. 299 05338 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37838169 JRNL DOI 10.1016/J.JBC.2023.105338 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 7129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 382 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 512 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.51000 REMARK 3 B22 (A**2) : 2.32000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.412 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.281 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.866 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2005 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1801 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2730 ; 1.251 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4108 ; 0.447 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.224 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 9 ; 4.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;17.757 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 319 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2434 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 440 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 4.547 ; 5.468 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1110 ; 4.547 ; 5.467 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1386 ; 7.018 ; 9.816 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1387 ; 7.019 ; 9.816 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 895 ; 4.209 ; 5.361 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 892 ; 4.199 ; 5.362 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1341 ; 6.413 ; 9.880 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2166 ; 9.023 ;47.700 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2167 ; 9.021 ;47.700 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8Q5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292131529. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7522 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 34.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A CRYSTAL OF THE DHAP COMPLEX GREW REMARK 280 FROM 14 MG ML-1 ENZYME IN 50 MM TRIS BUFFER PH 7.4 IN A DROP REMARK 280 WITH 0.15 UL PROTEIN TO 0.15 UL MOTHER LIQUOR SOAKED WITH SFP REMARK 280 FOR 2 MIN, WITH THE RESERVOIR SOLUTION CONTAINING 25% PEG 1,500 REMARK 280 W/V, 0.1 M SPG (SUCCINIC ACID, PROPIONATE, GLYCINE) BUFFER PH 7, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.30250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.83450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.65000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.30250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.83450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.65000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.30250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.83450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.30250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.83450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASP A 144 REMARK 465 ILE A 145 REMARK 465 SER A 146 REMARK 465 VAL A 147 REMARK 465 ASP A 148 REMARK 465 GLU A 149 REMARK 465 LEU A 285 REMARK 465 GLN A 286 REMARK 465 PHE A 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 7 CE NZ REMARK 470 LYS A 15 CD CE NZ REMARK 470 ILE A 20 CD1 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 60 CD CE NZ REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 THR A 141 OG1 CG2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 ASP A 151 CG OD1 OD2 REMARK 470 LEU A 153 CG CD1 CD2 REMARK 470 ILE A 154 CG1 CG2 CD1 REMARK 470 SER A 156 OG REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LEU A 161 CG CD1 CD2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 LEU A 172 CG CD1 CD2 REMARK 470 SER A 175 OG REMARK 470 THR A 178 OG1 CG2 REMARK 470 VAL A 182 CG1 CG2 REMARK 470 TYR A 183 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 GLN A 185 CG CD OE1 NE2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 LEU A 189 CG CD1 CD2 REMARK 470 PHE A 191 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 195 CG CD OE1 NE2 REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 ILE A 197 CG1 CG2 CD1 REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 ILE A 200 CG1 CG2 CD1 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LEU A 207 CG CD1 CD2 REMARK 470 ASP A 216 CG OD1 OD2 REMARK 470 ARG A 219 NE CZ NH1 NH2 REMARK 470 GLN A 220 CG CD OE1 NE2 REMARK 470 LEU A 224 CG CD1 CD2 REMARK 470 GLN A 237 CG CD OE1 NE2 REMARK 470 GLN A 241 CG CD OE1 NE2 REMARK 470 LEU A 243 CG CD1 CD2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 LEU A 247 CG CD1 CD2 REMARK 470 ASN A 249 CG OD1 ND2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LEU A 260 CG CD1 CD2 REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 LYS A 270 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 40.31 -74.28 REMARK 500 ASN A 27 -165.28 -165.72 REMARK 500 GLN A 42 51.44 39.88 REMARK 500 ASP A 151 -89.41 -89.86 REMARK 500 ALA A 152 139.52 167.51 REMARK 500 LEU A 153 98.60 -170.85 REMARK 500 ILE A 154 -158.39 -94.85 REMARK 500 ILE A 176 15.45 -146.94 REMARK 500 GLU A 186 114.21 -38.70 REMARK 500 ASP A 232 -71.49 -135.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 83 NE2 15.3 REMARK 620 3 HIS A 180 NE2 103.6 108.2 REMARK 620 4 HIS A 208 ND1 92.9 79.7 137.0 REMARK 620 5 13P A 303 O2 153.4 162.0 87.3 95.3 REMARK 620 6 13P A 303 O3 88.6 102.1 98.8 121.4 65.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 83 NE2 12.6 REMARK 620 3 HIS A 208 ND1 73.5 77.4 REMARK 620 4 HIS A 208 ND1 109.0 109.8 36.9 REMARK 620 N 1 2 3 DBREF1 8Q5A A 1 287 UNP A0A2A2MA06_9GAMM DBREF2 8Q5A A A0A2A2MA06 1 287 SEQADV 8Q5A MET A -19 UNP A0A2A2MA0 INITIATING METHIONINE SEQADV 8Q5A GLY A -18 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A SER A -17 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A SER A -16 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A HIS A -15 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A HIS A -14 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A HIS A -13 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A HIS A -12 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A HIS A -11 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A HIS A -10 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A SER A -9 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A SER A -8 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A GLY A -7 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A LEU A -6 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A VAL A -5 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A PRO A -4 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A ARG A -3 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A GLY A -2 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A SER A -1 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q5A HIS A 0 UNP A0A2A2MA0 EXPRESSION TAG SEQRES 1 A 307 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 307 LEU VAL PRO ARG GLY SER HIS MET PRO TYR VAL SER GLY SEQRES 3 A 307 LYS THR MET ILE GLN GLN ALA TRP LYS HIS GLY TYR ALA SEQRES 4 A 307 ILE GLY ALA PHE SER ALA HIS ASN ALA GLU THR VAL ARG SEQRES 5 A 307 ALA ILE LEU LEU ALA ALA GLN GLU GLU GLN SER PRO VAL SEQRES 6 A 307 MET ILE GLN VAL GLY GLN LYS VAL ILE SER VAL MET GLY SEQRES 7 A 307 LEU LYS PRO MET LYS GLU ILE ILE ASP ALA PHE MET HIS SEQRES 8 A 307 ASP ILE THR VAL PRO VAL CYS ILE HIS LEU ASP HIS SER SEQRES 9 A 307 ARG SER PHE GLU GLN THR MET GLN ALA ILE GLN CYS GLY SEQRES 10 A 307 PHE GLN SER VAL MET PHE ASP GLY SER HIS LEU SER PHE SEQRES 11 A 307 GLU GLU ASN VAL ARG ILE THR ARG ALA ALA SER GLU VAL SEQRES 12 A 307 ALA HIS ALA LEU ASN ILE GLY MET GLU GLY GLU ILE GLY SEQRES 13 A 307 LYS ILE GLY GLY THR GLU ASP ASP ILE SER VAL ASP GLU SEQRES 14 A 307 LYS ASP ALA LEU ILE THR SER CYS ASP GLU ALA LEU ARG SEQRES 15 A 307 PHE SER GLU GLY THR ASP VAL ASP TYR LEU ALA VAL SER SEQRES 16 A 307 ILE GLY THR ALA HIS GLY VAL TYR LYS GLN GLU PRO LYS SEQRES 17 A 307 LEU ALA PHE GLY ARG LEU GLN GLU ILE ARG GLU ILE VAL SEQRES 18 A 307 LYS LYS PRO ILE VAL LEU HIS GLY GLY SER GLY VAL PRO SEQRES 19 A 307 ASP ASP GLN ILE ARG GLN ALA ILE ALA LEU GLY VAL ALA SEQRES 20 A 307 LYS VAL ASN VAL ASP THR GLU LEU ARG GLN ALA PHE THR SEQRES 21 A 307 GLN GLY LEU CYS GLU VAL LEU THR ASN ASP PRO GLU GLU SEQRES 22 A 307 TYR ALA LEU ALA VAL SER LEU GLY HIS GLY ARG ASP VAL SEQRES 23 A 307 MET LYS GLU LYS VAL ILE GLU LYS ILE ARG LEU PHE GLY SEQRES 24 A 307 SER ASN GLY LYS ALA LEU GLN PHE HET ZN A 301 1 HET ZN A 302 1 HET 13P A 303 10 HETNAM ZN ZINC ION HETNAM 13P 1,3-DIHYDROXYACETONEPHOSPHATE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 13P C3 H7 O6 P FORMUL 5 HOH *6(H2 O) HELIX 1 AA1 SER A 5 HIS A 16 1 12 HELIX 2 AA2 ASN A 27 GLU A 41 1 15 HELIX 3 AA3 GLY A 50 GLY A 58 1 9 HELIX 4 AA4 GLY A 58 PHE A 69 1 12 HELIX 5 AA5 SER A 86 CYS A 96 1 11 HELIX 6 AA6 SER A 109 LEU A 127 1 19 HELIX 7 AA7 SER A 156 ASP A 168 1 13 HELIX 8 AA8 ALA A 190 LYS A 202 1 13 HELIX 9 AA9 PRO A 214 LEU A 224 1 11 HELIX 10 AB1 ASP A 232 ASP A 250 1 19 HELIX 11 AB2 ALA A 255 GLY A 279 1 25 SHEET 1 AA1 9 ILE A 20 SER A 24 0 SHEET 2 AA1 9 VAL A 45 VAL A 49 1 O MET A 46 N PHE A 23 SHEET 3 AA1 9 VAL A 77 SER A 84 1 O HIS A 80 N VAL A 49 SHEET 4 AA1 9 SER A 100 PHE A 103 1 O SER A 100 N ILE A 79 SHEET 5 AA1 9 GLY A 130 ILE A 135 1 O GLU A 132 N VAL A 101 SHEET 6 AA1 9 TYR A 171 VAL A 174 1 O ALA A 173 N GLY A 133 SHEET 7 AA1 9 ILE A 205 LEU A 207 1 O VAL A 206 N LEU A 172 SHEET 8 AA1 9 VAL A 226 VAL A 231 1 O LYS A 228 N LEU A 207 SHEET 9 AA1 9 ILE A 20 SER A 24 1 N ILE A 20 O ALA A 227 LINK NE2AHIS A 83 ZN ZN A 301 1555 1555 1.98 LINK NE2BHIS A 83 ZN ZN A 301 1555 1555 2.33 LINK NE2AHIS A 83 ZN ZN A 302 1555 1555 2.48 LINK NE2BHIS A 83 ZN ZN A 302 1555 1555 2.03 LINK NE2 HIS A 180 ZN ZN A 301 1555 1555 1.91 LINK ND1AHIS A 208 ZN ZN A 301 1555 1555 2.15 LINK ND1AHIS A 208 ZN ZN A 302 1555 1555 2.53 LINK ND1BHIS A 208 ZN ZN A 302 1555 1555 2.49 LINK ZN ZN A 301 O2 13P A 303 1555 1555 2.61 LINK ZN ZN A 301 O3 13P A 303 1555 1555 2.32 CRYST1 64.605 87.669 103.300 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015479 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009681 0.00000