data_8Q60 # _entry.id 8Q60 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8Q60 pdb_00008q60 10.2210/pdb8q60/pdb WWPDB D_1292132647 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-02-19 ? 2 'Structure model' 1 1 2025-05-14 ? 3 'Structure model' 1 2 2025-06-11 ? 4 'Structure model' 1 3 2025-08-06 ? 5 'Structure model' 1 4 2025-08-13 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' citation 6 5 'Structure model' citation 7 5 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.country' 2 3 'Structure model' '_citation.journal_abbrev' 3 3 'Structure model' '_citation.journal_id_ASTM' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' 8 3 'Structure model' '_citation.pdbx_database_id_DOI' 9 3 'Structure model' '_citation.pdbx_database_id_PubMed' 10 3 'Structure model' '_citation.title' 11 3 'Structure model' '_citation.year' 12 4 'Structure model' '_citation.journal_volume' 13 4 'Structure model' '_citation.page_first' 14 4 'Structure model' '_citation.page_last' 15 5 'Structure model' '_citation.page_first' 16 5 'Structure model' '_citation.page_last' 17 5 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8Q60 _pdbx_database_status.recvd_initial_deposition_date 2023-08-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email ivan.huc@cup.lmu.de _pdbx_contact_author.name_first Ivan _pdbx_contact_author.name_last HUC _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7036-9696 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mandal, P.K.' 1 0000-0001-5996-956X 'Loos, M.' 2 ? 'Xu, F.' 3 ? 'Huc, I.' 4 0000-0001-7036-9696 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first e202505273 _citation.page_last e202505273 _citation.title 'Interfacing B-DNA and DNA Mimic Foldamers.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202505273 _citation.pdbx_database_id_PubMed 40346004 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Loos, M.' 1 ? primary 'Xu, F.' 2 ? primary 'Mandal, P.K.' 3 0000-0001-5996-956X primary 'Chakrabortty, T.' 4 ? primary 'Douat, C.' 5 0000-0003-2678-1047 primary 'Konrad, D.B.' 6 0000-0001-5718-8081 primary 'Cabbar, M.' 7 ? primary 'Singer, J.' 8 ? primary 'Corvaglia, V.' 9 0000-0002-6180-5975 primary 'Carell, T.' 10 0000-0001-7898-2831 primary 'Huc, I.' 11 0000-0001-7036-9696 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*TP*TP*TP*TP*G)-3'" 1830.225 2 ? ? ? ;Compound consists of a synthetic DNA hairpin with sequence 5'-D(*GP*TP*TP*TP*TP*G*(DRG)P*CP*AP*AP*AP*AP*C)-3' ; 2 polymer syn ;DNA (5'-D(CP*AP*AP*AP*AP*C)-3') ; 1786.234 2 ? ? ? ? 3 non-polymer syn '4-[8-(aminomethyl)-2-[[5-(3-oxidanylpropyl)quinolin-8-yl]carbamoyl]quinolin-4-yl]butyl dihydrogen phosphite' 522.533 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 5 water nat water 18.015 175 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DT)(DT)(DT)(DT)(DG)' GTTTTG A,D ? 2 polydeoxyribonucleotide no no '(DC)(DA)(DA)(DA)(DA)(DC)' CAAAAC B,E ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '4-[8-(aminomethyl)-2-[[5-(3-oxidanylpropyl)quinolin-8-yl]carbamoyl]quinolin-4-yl]butyl dihydrogen phosphite' JY9 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DT n 1 4 DT n 1 5 DT n 1 6 DG n 2 1 DC n 2 2 DA n 2 3 DA n 2 4 DA n 2 5 DA n 2 6 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 6 'synthetic construct' ? 32630 ? 2 1 sample 1 7 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 JY9 non-polymer . '4-[8-(aminomethyl)-2-[[5-(3-oxidanylpropyl)quinolin-8-yl]carbamoyl]quinolin-4-yl]butyl dihydrogen phosphite' ? 'C27 H31 N4 O5 P' 522.533 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 DG 1 1 1 DG DG D . n B 1 2 DT 2 2 2 DT DT D . n B 1 3 DT 3 3 3 DT DT D . n B 1 4 DT 4 4 4 DT DT D . n B 1 5 DT 5 5 5 DT DT D . n B 1 6 DG 6 6 6 DG DG D . n C 2 1 DC 1 8 9 DC DC B . n C 2 2 DA 2 9 10 DA DA B . n C 2 3 DA 3 10 11 DA DA B . n C 2 4 DA 4 11 12 DA DA B . n C 2 5 DA 5 12 13 DA DA B . n C 2 6 DC 6 13 14 DC DC B . n D 2 1 DC 1 8 9 DC DC E . n D 2 2 DA 2 9 10 DA DA E . n D 2 3 DA 3 10 11 DA DA E . n D 2 4 DA 4 11 12 DA DA E . n D 2 5 DA 5 12 13 DA DA E . n D 2 6 DC 6 13 14 DC DC E . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id JY9 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id JY9 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 JY9 1 101 7 JY9 DRG A . F 4 MG 1 101 1 MG MG D . G 3 JY9 1 102 7 JY9 DRG D . H 4 MG 1 101 2 MG MG B . I 4 MG 1 102 4 MG MG B . J 4 MG 1 101 3 MG MG E . K 5 HOH 1 201 38 HOH HOH A . K 5 HOH 2 202 99 HOH HOH A . K 5 HOH 3 203 106 HOH HOH A . K 5 HOH 4 204 72 HOH HOH A . K 5 HOH 5 205 27 HOH HOH A . K 5 HOH 6 206 41 HOH HOH A . K 5 HOH 7 207 25 HOH HOH A . K 5 HOH 8 208 54 HOH HOH A . K 5 HOH 9 209 47 HOH HOH A . K 5 HOH 10 210 108 HOH HOH A . K 5 HOH 11 211 15 HOH HOH A . K 5 HOH 12 212 1 HOH HOH A . K 5 HOH 13 213 76 HOH HOH A . K 5 HOH 14 214 9 HOH HOH A . K 5 HOH 15 215 40 HOH HOH A . K 5 HOH 16 216 51 HOH HOH A . K 5 HOH 17 217 136 HOH HOH A . K 5 HOH 18 218 37 HOH HOH A . K 5 HOH 19 219 16 HOH HOH A . K 5 HOH 20 220 97 HOH HOH A . K 5 HOH 21 221 56 HOH HOH A . K 5 HOH 22 222 159 HOH HOH A . K 5 HOH 23 223 163 HOH HOH A . K 5 HOH 24 224 8 HOH HOH A . K 5 HOH 25 225 64 HOH HOH A . K 5 HOH 26 226 94 HOH HOH A . K 5 HOH 27 227 150 HOH HOH A . K 5 HOH 28 228 80 HOH HOH A . K 5 HOH 29 229 24 HOH HOH A . K 5 HOH 30 230 152 HOH HOH A . K 5 HOH 31 231 66 HOH HOH A . K 5 HOH 32 232 96 HOH HOH A . K 5 HOH 33 233 155 HOH HOH A . K 5 HOH 34 234 122 HOH HOH A . K 5 HOH 35 235 143 HOH HOH A . K 5 HOH 36 236 7 HOH HOH A . K 5 HOH 37 237 138 HOH HOH A . K 5 HOH 38 238 131 HOH HOH A . K 5 HOH 39 239 148 HOH HOH A . K 5 HOH 40 240 125 HOH HOH A . K 5 HOH 41 241 12 HOH HOH A . K 5 HOH 42 242 121 HOH HOH A . K 5 HOH 43 243 44 HOH HOH A . K 5 HOH 44 244 112 HOH HOH A . K 5 HOH 45 245 88 HOH HOH A . K 5 HOH 46 246 129 HOH HOH A . K 5 HOH 47 247 115 HOH HOH A . K 5 HOH 48 248 114 HOH HOH A . K 5 HOH 49 249 107 HOH HOH A . L 5 HOH 1 201 48 HOH HOH D . L 5 HOH 2 202 78 HOH HOH D . L 5 HOH 3 203 147 HOH HOH D . L 5 HOH 4 204 140 HOH HOH D . L 5 HOH 5 205 28 HOH HOH D . L 5 HOH 6 206 110 HOH HOH D . L 5 HOH 7 207 11 HOH HOH D . L 5 HOH 8 208 168 HOH HOH D . L 5 HOH 9 209 6 HOH HOH D . L 5 HOH 10 210 53 HOH HOH D . L 5 HOH 11 211 23 HOH HOH D . L 5 HOH 12 212 65 HOH HOH D . L 5 HOH 13 213 105 HOH HOH D . L 5 HOH 14 214 172 HOH HOH D . L 5 HOH 15 215 77 HOH HOH D . L 5 HOH 16 216 5 HOH HOH D . L 5 HOH 17 217 82 HOH HOH D . L 5 HOH 18 218 52 HOH HOH D . L 5 HOH 19 219 46 HOH HOH D . L 5 HOH 20 220 39 HOH HOH D . L 5 HOH 21 221 117 HOH HOH D . L 5 HOH 22 222 55 HOH HOH D . L 5 HOH 23 223 20 HOH HOH D . L 5 HOH 24 224 142 HOH HOH D . L 5 HOH 25 225 59 HOH HOH D . L 5 HOH 26 226 74 HOH HOH D . L 5 HOH 27 227 79 HOH HOH D . L 5 HOH 28 228 149 HOH HOH D . L 5 HOH 29 229 166 HOH HOH D . L 5 HOH 30 230 128 HOH HOH D . L 5 HOH 31 231 111 HOH HOH D . L 5 HOH 32 232 100 HOH HOH D . L 5 HOH 33 233 167 HOH HOH D . L 5 HOH 34 234 173 HOH HOH D . L 5 HOH 35 235 120 HOH HOH D . L 5 HOH 36 236 68 HOH HOH D . L 5 HOH 37 237 139 HOH HOH D . L 5 HOH 38 238 157 HOH HOH D . L 5 HOH 39 239 137 HOH HOH D . L 5 HOH 40 240 116 HOH HOH D . L 5 HOH 41 241 101 HOH HOH D . L 5 HOH 42 242 61 HOH HOH D . L 5 HOH 43 243 95 HOH HOH D . M 5 HOH 1 201 60 HOH HOH B . M 5 HOH 2 202 104 HOH HOH B . M 5 HOH 3 203 50 HOH HOH B . M 5 HOH 4 204 73 HOH HOH B . M 5 HOH 5 205 26 HOH HOH B . M 5 HOH 6 206 156 HOH HOH B . M 5 HOH 7 207 10 HOH HOH B . M 5 HOH 8 208 84 HOH HOH B . M 5 HOH 9 209 62 HOH HOH B . M 5 HOH 10 210 144 HOH HOH B . M 5 HOH 11 211 43 HOH HOH B . M 5 HOH 12 212 13 HOH HOH B . M 5 HOH 13 213 22 HOH HOH B . M 5 HOH 14 214 161 HOH HOH B . M 5 HOH 15 215 19 HOH HOH B . M 5 HOH 16 216 36 HOH HOH B . M 5 HOH 17 217 67 HOH HOH B . M 5 HOH 18 218 113 HOH HOH B . M 5 HOH 19 219 102 HOH HOH B . M 5 HOH 20 220 146 HOH HOH B . M 5 HOH 21 221 126 HOH HOH B . M 5 HOH 22 222 130 HOH HOH B . M 5 HOH 23 223 30 HOH HOH B . M 5 HOH 24 224 103 HOH HOH B . M 5 HOH 25 225 123 HOH HOH B . M 5 HOH 26 226 160 HOH HOH B . M 5 HOH 27 227 18 HOH HOH B . M 5 HOH 28 228 42 HOH HOH B . M 5 HOH 29 229 75 HOH HOH B . M 5 HOH 30 230 89 HOH HOH B . M 5 HOH 31 231 135 HOH HOH B . M 5 HOH 32 232 91 HOH HOH B . M 5 HOH 33 233 83 HOH HOH B . M 5 HOH 34 234 175 HOH HOH B . M 5 HOH 35 235 45 HOH HOH B . M 5 HOH 36 236 93 HOH HOH B . M 5 HOH 37 237 87 HOH HOH B . M 5 HOH 38 238 133 HOH HOH B . M 5 HOH 39 239 35 HOH HOH B . M 5 HOH 40 240 158 HOH HOH B . M 5 HOH 41 241 119 HOH HOH B . M 5 HOH 42 242 169 HOH HOH B . M 5 HOH 43 243 70 HOH HOH B . M 5 HOH 44 244 127 HOH HOH B . N 5 HOH 1 201 57 HOH HOH E . N 5 HOH 2 202 154 HOH HOH E . N 5 HOH 3 203 118 HOH HOH E . N 5 HOH 4 204 151 HOH HOH E . N 5 HOH 5 205 153 HOH HOH E . N 5 HOH 6 206 98 HOH HOH E . N 5 HOH 7 207 81 HOH HOH E . N 5 HOH 8 208 14 HOH HOH E . N 5 HOH 9 209 31 HOH HOH E . N 5 HOH 10 210 92 HOH HOH E . N 5 HOH 11 211 134 HOH HOH E . N 5 HOH 12 212 21 HOH HOH E . N 5 HOH 13 213 71 HOH HOH E . N 5 HOH 14 214 17 HOH HOH E . N 5 HOH 15 215 90 HOH HOH E . N 5 HOH 16 216 34 HOH HOH E . N 5 HOH 17 217 109 HOH HOH E . N 5 HOH 18 218 49 HOH HOH E . N 5 HOH 19 219 174 HOH HOH E . N 5 HOH 20 220 3 HOH HOH E . N 5 HOH 21 221 2 HOH HOH E . N 5 HOH 22 222 29 HOH HOH E . N 5 HOH 23 223 32 HOH HOH E . N 5 HOH 24 224 69 HOH HOH E . N 5 HOH 25 225 33 HOH HOH E . N 5 HOH 26 226 164 HOH HOH E . N 5 HOH 27 227 176 HOH HOH E . N 5 HOH 28 228 85 HOH HOH E . N 5 HOH 29 229 63 HOH HOH E . N 5 HOH 30 230 162 HOH HOH E . N 5 HOH 31 231 141 HOH HOH E . N 5 HOH 32 232 4 HOH HOH E . N 5 HOH 33 233 165 HOH HOH E . N 5 HOH 34 234 58 HOH HOH E . N 5 HOH 35 235 171 HOH HOH E . N 5 HOH 36 236 86 HOH HOH E . N 5 HOH 37 237 145 HOH HOH E . N 5 HOH 38 238 132 HOH HOH E . N 5 HOH 39 239 124 HOH HOH E . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0419 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 105.616 _cell.angle_alpha_esd ? _cell.angle_beta 105.767 _cell.angle_beta_esd ? _cell.angle_gamma 94.343 _cell.angle_gamma_esd ? _cell.entry_id 8Q60 _cell.details ? _cell.formula_units_Z ? _cell.length_a 26.517 _cell.length_a_esd ? _cell.length_b 30.040 _cell.length_b_esd ? _cell.length_c 45.224 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8Q60 _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P -1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8Q60 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59 _exptl_crystal.description 'Rod-like crystals' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 200, MES, magnesium chloride' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details 'Toroidal mirror' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-03-11 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97625 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97625 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P14 (MX2)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate 49.79 _reflns.entry_id 8Q60 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 28.56 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3985 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 0.90 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.98 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.04873 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.03446 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.53 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 397 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.0 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.2712 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.901 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 89 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.1918 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -2.019 _refine.aniso_B[1][2] 5.863 _refine.aniso_B[1][3] -2.551 _refine.aniso_B[2][2] 12.265 _refine.aniso_B[2][3] -4.386 _refine.aniso_B[3][3] -10.245 _refine.B_iso_max ? _refine.B_iso_mean 34.254 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.925 _refine.correlation_coeff_Fo_to_Fc_free 0.878 _refine.details 'Hydrogens have not been used' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8Q60 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 28.56 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3985 _refine.ls_number_reflns_R_free 382 _refine.ls_number_reflns_R_work 3603 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 90.179 _refine.ls_percent_reflns_R_free 9.586 _refine.ls_R_factor_all 0.283 _refine.ls_R_factor_obs 0.2832 _refine.ls_R_factor_R_free 0.3279 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2782 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL PLUS MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.166 _refine.pdbx_overall_ESU_R_Free 0.083 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 7.788 _refine.overall_SU_ML 0.111 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 401 _refine_hist.pdbx_number_atoms_ligand 163 _refine_hist.number_atoms_solvent 175 _refine_hist.number_atoms_total 739 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 28.56 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 0.012 626 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 1.960 1.913 936 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.085 0.200 92 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.014 0.020 312 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.233 0.200 260 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.334 0.200 359 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.271 0.200 125 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.160 0.200 3 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.173 0.200 87 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.189 0.200 69 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 4.540 2.866 626 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 5.944 5.171 936 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 9.472 41.057 3443 ? r_lrange_it ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.500 2.565 . . 31 265 88.8889 . . . . 0.334 . . . . . . . . . . . 0.442 'X-RAY DIFFRACTION' 2.565 2.634 . . 31 249 88.8889 . . . . 0.326 . . . . . . . . . . . 0.420 'X-RAY DIFFRACTION' 2.634 2.710 . . 18 251 88.7789 . . . . 0.319 . . . . . . . . . . . 0.524 'X-RAY DIFFRACTION' 2.710 2.793 . . 17 255 90.9699 . . . . 0.294 . . . . . . . . . . . 0.473 'X-RAY DIFFRACTION' 2.793 2.883 . . 15 235 87.1080 . . . . 0.309 . . . . . . . . . . . 0.413 'X-RAY DIFFRACTION' 2.883 2.983 . . 22 246 90.2357 . . . . 0.307 . . . . . . . . . . . 0.295 'X-RAY DIFFRACTION' 2.983 3.095 . . 25 194 85.5469 . . . . 0.370 . . . . . . . . . . . 0.373 'X-RAY DIFFRACTION' 3.095 3.219 . . 33 207 90.2256 . . . . 0.263 . . . . . . . . . . . 0.296 'X-RAY DIFFRACTION' 3.219 3.361 . . 40 187 90.4382 . . . . 0.276 . . . . . . . . . . . 0.298 'X-RAY DIFFRACTION' 3.361 3.522 . . 29 190 93.1915 . . . . 0.209 . . . . . . . . . . . 0.310 'X-RAY DIFFRACTION' 3.522 3.710 . . 12 188 90.0901 . . . . 0.205 . . . . . . . . . . . 0.421 'X-RAY DIFFRACTION' 3.710 3.931 . . 23 184 93.6652 . . . . 0.222 . . . . . . . . . . . 0.281 'X-RAY DIFFRACTION' 3.931 4.196 . . 18 170 91.2621 . . . . 0.226 . . . . . . . . . . . 0.219 'X-RAY DIFFRACTION' 4.196 4.524 . . 21 145 88.7701 . . . . 0.291 . . . . . . . . . . . 0.305 'X-RAY DIFFRACTION' 4.524 4.944 . . 6 153 91.9075 . . . . 0.307 . . . . . . . . . . . 0.163 'X-RAY DIFFRACTION' 4.944 5.507 . . 3 135 88.4615 . . . . 0.271 . . . . . . . . . . . 0.322 'X-RAY DIFFRACTION' 5.507 6.320 . . 8 120 92.7536 . . . . 0.300 . . . . . . . . . . . 0.131 'X-RAY DIFFRACTION' 6.320 7.647 . . 12 106 96.7213 . . . . 0.288 . . . . . . . . . . . 0.539 'X-RAY DIFFRACTION' 7.647 10.446 . . 12 76 94.6237 . . . . 0.292 . . . . . . . . . . . 0.375 'X-RAY DIFFRACTION' 10.446 28.56 . . 6 47 89.8305 . . . . 0.419 . . . . . . . . . . . 0.316 # _struct.entry_id 8Q60 _struct.title 'Racemic crystal structure of a synthetic DNA Hairpin with diquinoline linker.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8Q60 _struct_keywords.text 'DNA hairpin, DNA-mimic foldamers, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8Q60 8Q60 ? 1 ? 1 2 PDB 8Q60 8Q60 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8Q60 A 1 ? 6 ? 8Q60 1 ? 6 ? 1 6 2 1 8Q60 D 1 ? 6 ? 8Q60 1 ? 6 ? 1 6 3 2 8Q60 B 1 ? 6 ? 8Q60 8 ? 13 ? 8 13 4 2 8Q60 E 1 ? 6 ? 8Q60 8 ? 13 ? 8 13 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,H,I,K,M 2 1 B,D,F,G,J,L,N # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A DG 6 "O3'" ? ? ? 1_555 E JY9 . PAA ? ? A DG 6 A JY9 101 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale one ? E JY9 . OBC ? ? ? 1_555 C DC 1 P ? ? A JY9 101 B DC 8 1_555 ? ? ? ? ? ? ? 1.680 ? ? covale3 covale one ? B DG 6 "O3'" ? ? ? 1_555 G JY9 . PAA ? ? D DG 6 D JY9 102 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale4 covale one ? G JY9 . OBC ? ? ? 1_555 D DC 1 P ? ? D JY9 102 E DC 8 1_555 ? ? ? ? ? ? ? 1.598 ? ? metalc1 metalc ? ? K HOH . O ? ? ? 1_555 I MG . MG ? ? A HOH 203 B MG 102 1_555 ? ? ? ? ? ? ? 2.983 ? ? metalc2 metalc ? ? K HOH . O ? ? ? 2_578 F MG . MG ? ? A HOH 212 D MG 101 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc3 metalc ? ? K HOH . O ? ? ? 2_578 F MG . MG ? ? A HOH 236 D MG 101 1_555 ? ? ? ? ? ? ? 2.138 ? ? metalc4 metalc ? ? K HOH . O ? ? ? 1_555 I MG . MG ? ? A HOH 238 B MG 102 1_555 ? ? ? ? ? ? ? 2.877 ? ? metalc5 metalc ? ? K HOH . O ? ? ? 1_555 I MG . MG ? ? A HOH 243 B MG 102 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc6 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? D MG 101 D HOH 209 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc7 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? D MG 101 D HOH 230 1_555 ? ? ? ? ? ? ? 1.958 ? ? metalc8 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? D MG 101 D HOH 241 1_555 ? ? ? ? ? ? ? 1.955 ? ? metalc9 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? D MG 101 E HOH 236 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc10 metalc ? ? L HOH . O ? ? ? 1_555 J MG . MG ? ? D HOH 202 E MG 101 1_555 ? ? ? ? ? ? ? 2.819 ? ? metalc11 metalc ? ? L HOH . O ? ? ? 1_555 J MG . MG ? ? D HOH 203 E MG 101 1_555 ? ? ? ? ? ? ? 2.077 ? ? metalc12 metalc ? ? C DA 3 "O4'" ? ? ? 1_555 I MG . MG ? ? B DA 10 B MG 102 1_555 ? ? ? ? ? ? ? 2.687 ? ? metalc13 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 101 B HOH 212 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc14 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 101 B HOH 219 1_555 ? ? ? ? ? ? ? 2.020 ? ? metalc15 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 101 B HOH 227 1_555 ? ? ? ? ? ? ? 1.718 ? ? metalc16 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 101 B HOH 239 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc17 metalc ? ? H MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 101 E HOH 211 2_588 ? ? ? ? ? ? ? 2.063 ? ? metalc18 metalc ? ? H MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 101 E HOH 232 2_588 ? ? ? ? ? ? ? 2.013 ? ? metalc19 metalc ? ? I MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 102 B HOH 224 1_555 ? ? ? ? ? ? ? 2.905 ? ? metalc20 metalc ? ? J MG . MG ? ? ? 1_555 N HOH . O ? ? E MG 101 E HOH 228 1_555 ? ? ? ? ? ? ? 2.084 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 C DC 6 N3 ? ? A DG 1 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 C DC 6 O2 ? ? A DG 1 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 C DC 6 N4 ? ? A DG 1 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 C DA 5 N1 ? ? A DT 2 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 C DA 5 N6 ? ? A DT 2 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 C DA 4 N1 ? ? A DT 3 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 C DA 4 N6 ? ? A DT 3 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 C DA 3 N1 ? ? A DT 4 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 C DA 3 N6 ? ? A DT 4 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 5 N3 ? ? ? 1_555 C DA 2 N1 ? ? A DT 5 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 O4 ? ? ? 1_555 C DA 2 N6 ? ? A DT 5 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 C DC 1 N3 ? ? A DG 6 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 C DC 1 O2 ? ? A DG 6 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 C DC 1 N4 ? ? A DG 6 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 1 N2 ? ? ? 1_555 D DC 6 O2 ? ? D DG 1 E DC 13 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog16 hydrog ? ? B DT 2 N3 ? ? ? 1_555 D DA 5 N1 ? ? D DT 2 E DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 2 O4 ? ? ? 1_555 D DA 5 N6 ? ? D DT 2 E DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 3 N3 ? ? ? 1_555 D DA 4 N1 ? ? D DT 3 E DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 3 O4 ? ? ? 1_555 D DA 4 N6 ? ? D DT 3 E DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 4 N3 ? ? ? 1_555 D DA 3 N1 ? ? D DT 4 E DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 4 O4 ? ? ? 1_555 D DA 3 N6 ? ? D DT 4 E DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 5 N3 ? ? ? 1_555 D DA 2 N1 ? ? D DT 5 E DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 5 O4 ? ? ? 1_555 D DA 2 N6 ? ? D DT 5 E DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 6 N1 ? ? ? 1_555 D DC 1 N3 ? ? D DG 6 E DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 6 N2 ? ? ? 1_555 D DC 1 O2 ? ? D DG 6 E DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 6 O6 ? ? ? 1_555 D DC 1 N4 ? ? D DG 6 E DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? K HOH . ? A HOH 203 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? K HOH . ? A HOH 238 ? 1_555 121.7 ? 2 O ? K HOH . ? A HOH 203 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? K HOH . ? A HOH 243 ? 1_555 68.3 ? 3 O ? K HOH . ? A HOH 238 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? K HOH . ? A HOH 243 ? 1_555 81.3 ? 4 O ? K HOH . ? A HOH 203 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 "O4'" ? C DA 3 ? B DA 10 ? 1_555 120.7 ? 5 O ? K HOH . ? A HOH 238 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 "O4'" ? C DA 3 ? B DA 10 ? 1_555 115.4 ? 6 O ? K HOH . ? A HOH 243 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 "O4'" ? C DA 3 ? B DA 10 ? 1_555 137.6 ? 7 O ? K HOH . ? A HOH 203 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 224 ? 1_555 84.9 ? 8 O ? K HOH . ? A HOH 238 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 224 ? 1_555 124.0 ? 9 O ? K HOH . ? A HOH 243 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 224 ? 1_555 63.3 ? 10 "O4'" ? C DA 3 ? B DA 10 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 224 ? 1_555 75.8 ? 11 O ? K HOH . ? A HOH 212 ? 2_578 MG ? F MG . ? D MG 101 ? 1_555 O ? K HOH . ? A HOH 236 ? 2_578 76.8 ? 12 O ? K HOH . ? A HOH 212 ? 2_578 MG ? F MG . ? D MG 101 ? 1_555 O ? L HOH . ? D HOH 209 ? 1_555 77.3 ? 13 O ? K HOH . ? A HOH 236 ? 2_578 MG ? F MG . ? D MG 101 ? 1_555 O ? L HOH . ? D HOH 209 ? 1_555 77.2 ? 14 O ? K HOH . ? A HOH 212 ? 2_578 MG ? F MG . ? D MG 101 ? 1_555 O ? L HOH . ? D HOH 230 ? 1_555 146.2 ? 15 O ? K HOH . ? A HOH 236 ? 2_578 MG ? F MG . ? D MG 101 ? 1_555 O ? L HOH . ? D HOH 230 ? 1_555 72.0 ? 16 O ? L HOH . ? D HOH 209 ? 1_555 MG ? F MG . ? D MG 101 ? 1_555 O ? L HOH . ? D HOH 230 ? 1_555 83.2 ? 17 O ? K HOH . ? A HOH 212 ? 2_578 MG ? F MG . ? D MG 101 ? 1_555 O ? L HOH . ? D HOH 241 ? 1_555 72.7 ? 18 O ? K HOH . ? A HOH 236 ? 2_578 MG ? F MG . ? D MG 101 ? 1_555 O ? L HOH . ? D HOH 241 ? 1_555 147.0 ? 19 O ? L HOH . ? D HOH 209 ? 1_555 MG ? F MG . ? D MG 101 ? 1_555 O ? L HOH . ? D HOH 241 ? 1_555 84.0 ? 20 O ? L HOH . ? D HOH 230 ? 1_555 MG ? F MG . ? D MG 101 ? 1_555 O ? L HOH . ? D HOH 241 ? 1_555 132.5 ? 21 O ? K HOH . ? A HOH 212 ? 2_578 MG ? F MG . ? D MG 101 ? 1_555 O ? N HOH . ? E HOH 236 ? 1_555 101.7 ? 22 O ? K HOH . ? A HOH 236 ? 2_578 MG ? F MG . ? D MG 101 ? 1_555 O ? N HOH . ? E HOH 236 ? 1_555 80.7 ? 23 O ? L HOH . ? D HOH 209 ? 1_555 MG ? F MG . ? D MG 101 ? 1_555 O ? N HOH . ? E HOH 236 ? 1_555 157.5 ? 24 O ? L HOH . ? D HOH 230 ? 1_555 MG ? F MG . ? D MG 101 ? 1_555 O ? N HOH . ? E HOH 236 ? 1_555 86.2 ? 25 O ? L HOH . ? D HOH 241 ? 1_555 MG ? F MG . ? D MG 101 ? 1_555 O ? N HOH . ? E HOH 236 ? 1_555 117.5 ? 26 O ? L HOH . ? D HOH 202 ? 1_555 MG ? J MG . ? E MG 101 ? 1_555 O ? L HOH . ? D HOH 203 ? 1_555 79.7 ? 27 O ? L HOH . ? D HOH 202 ? 1_555 MG ? J MG . ? E MG 101 ? 1_555 O ? N HOH . ? E HOH 228 ? 1_555 70.0 ? 28 O ? L HOH . ? D HOH 203 ? 1_555 MG ? J MG . ? E MG 101 ? 1_555 O ? N HOH . ? E HOH 228 ? 1_555 144.4 ? 29 O ? M HOH . ? B HOH 212 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 219 ? 1_555 89.6 ? 30 O ? M HOH . ? B HOH 212 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 227 ? 1_555 97.4 ? 31 O ? M HOH . ? B HOH 219 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 227 ? 1_555 80.9 ? 32 O ? M HOH . ? B HOH 212 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 164.6 ? 33 O ? M HOH . ? B HOH 219 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 80.9 ? 34 O ? M HOH . ? B HOH 227 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 93.1 ? 35 O ? M HOH . ? B HOH 212 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 211 ? 2_588 87.2 ? 36 O ? M HOH . ? B HOH 219 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 211 ? 2_588 175.8 ? 37 O ? M HOH . ? B HOH 227 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 211 ? 2_588 102.1 ? 38 O ? M HOH . ? B HOH 239 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 211 ? 2_588 101.7 ? 39 O ? M HOH . ? B HOH 212 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 232 ? 2_588 88.4 ? 40 O ? M HOH . ? B HOH 219 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 232 ? 2_588 80.1 ? 41 O ? M HOH . ? B HOH 227 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 232 ? 2_588 160.0 ? 42 O ? M HOH . ? B HOH 239 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 232 ? 2_588 78.0 ? 43 O ? N HOH . ? E HOH 211 ? 2_588 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 232 ? 2_588 97.2 ? # _pdbx_entry_details.entry_id 8Q60 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 "O3'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 6 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OAB _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 JY9 _pdbx_validate_close_contact.auth_seq_id_2 101 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.02 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" D DG 1 ? ? "C4'" D DG 1 ? ? "C3'" D DG 1 ? ? 100.68 104.50 -3.82 0.40 N 2 1 C2 D DT 4 ? ? N3 D DT 4 ? ? C4 D DT 4 ? ? 123.45 127.20 -3.75 0.60 N 3 1 "O4'" D DT 5 ? ? "C1'" D DT 5 ? ? N1 D DT 5 ? ? 111.13 108.30 2.83 0.30 N 4 1 OP1 E DC 8 ? ? P E DC 8 ? ? OP2 E DC 8 ? ? 110.52 119.60 -9.08 1.50 N 5 1 "O4'" E DA 12 ? ? "C1'" E DA 12 ? ? N9 E DA 12 ? ? 110.28 108.30 1.98 0.30 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 204 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id K _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -16.5615 14.1796 52.2035 0.0085 ? -0.0037 ? 0.0190 ? 0.0107 ? -0.0164 ? 0.0581 ? 1.4361 ? -0.2228 ? -0.2250 ? 0.0372 ? -0.0231 ? 1.8012 ? 0.0490 ? -0.0017 ? -0.0052 ? -0.0101 ? -0.0009 ? -0.0040 ? 0.0060 ? 0.1168 ? -0.0481 ? 2 'X-RAY DIFFRACTION' ? refined -16.7134 21.4150 71.9675 0.0734 ? -0.0160 ? -0.0222 ? 0.0091 ? 0.0154 ? 0.0345 ? 1.4188 ? 0.0926 ? -0.6236 ? 0.3829 ? 0.5541 ? 1.2136 ? 0.1421 ? -0.0917 ? -0.0939 ? -0.0115 ? -0.0362 ? -0.0989 ? -0.1028 ? -0.0023 ? -0.1059 ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 14 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.selection_details ? # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 244 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.14 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 JY9 OAB O N N 147 JY9 PAA P N N 148 JY9 OAC O N N 149 JY9 OBE O N N 150 JY9 CBD C N N 151 JY9 CBG C N N 152 JY9 CBH C N N 153 JY9 CBI C N N 154 JY9 CBB C Y N 155 JY9 CBA C Y N 156 JY9 CAW C Y N 157 JY9 CAT C Y N 158 JY9 CAS C Y N 159 JY9 CAR C Y N 160 JY9 CAQ C Y N 161 JY9 CAU C N N 162 JY9 NAV N N N 163 JY9 CAX C Y N 164 JY9 NAY N Y N 165 JY9 CAZ C Y N 166 JY9 CAO C N N 167 JY9 OAP O N N 168 JY9 NAH N N N 169 JY9 CAD C Y N 170 JY9 CAG C Y N 171 JY9 CAF C Y N 172 JY9 CAI C Y N 173 JY9 NAN N Y N 174 JY9 CAM C Y N 175 JY9 CAL C Y N 176 JY9 CAK C Y N 177 JY9 CAJ C Y N 178 JY9 CAE C Y N 179 JY9 CBF C N N 180 JY9 CBJ C N N 181 JY9 CBK C N N 182 JY9 OBC O N N 183 JY9 H1 H N N 184 JY9 H2 H N N 185 JY9 H3 H N N 186 JY9 H4 H N N 187 JY9 H5 H N N 188 JY9 H6 H N N 189 JY9 H7 H N N 190 JY9 H8 H N N 191 JY9 H9 H N N 192 JY9 H10 H N N 193 JY9 H11 H N N 194 JY9 H12 H N N 195 JY9 H13 H N N 196 JY9 H14 H N N 197 JY9 H15 H N N 198 JY9 H16 H N N 199 JY9 H17 H N N 200 JY9 H18 H N N 201 JY9 H20 H N N 202 JY9 H21 H N N 203 JY9 H22 H N N 204 JY9 H23 H N N 205 JY9 H24 H N N 206 JY9 H25 H N N 207 JY9 H26 H N N 208 JY9 H27 H N N 209 JY9 H28 H N N 210 JY9 H29 H N N 211 JY9 H30 H N N 212 JY9 H31 H N N 213 JY9 H32 H N N 214 MG MG MG N N 215 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 JY9 OBC CBK sing N N 152 JY9 NAV CAU sing N N 153 JY9 CAL CAM doub Y N 154 JY9 CAL CAK sing Y N 155 JY9 CAM NAN sing Y N 156 JY9 CBJ CBK sing N N 157 JY9 CBJ CBF sing N N 158 JY9 CAK CAJ doub Y N 159 JY9 NAN CAI doub Y N 160 JY9 CAU CAQ sing N N 161 JY9 CAJ CAI sing Y N 162 JY9 CAJ CAE sing Y N 163 JY9 CAI CAD sing Y N 164 JY9 CBF CAE sing N N 165 JY9 CAE CAF doub Y N 166 JY9 CAR CAQ doub Y N 167 JY9 CAR CAS sing Y N 168 JY9 CAQ CAX sing Y N 169 JY9 CAD NAH sing N N 170 JY9 CAD CAG doub Y N 171 JY9 NAH CAO sing N N 172 JY9 NAY CAX doub Y N 173 JY9 NAY CAZ sing Y N 174 JY9 CAF CAG sing Y N 175 JY9 CAX CAW sing Y N 176 JY9 CAS CAT doub Y N 177 JY9 CAO CAZ sing N N 178 JY9 CAO OAP doub N N 179 JY9 CAZ CBA doub Y N 180 JY9 OAB PAA sing N N 181 JY9 CAW CAT sing Y N 182 JY9 CAW CBB doub Y N 183 JY9 PAA OBE sing N N 184 JY9 PAA OAC sing N N 185 JY9 CBA CBB sing Y N 186 JY9 CBB CBI sing N N 187 JY9 OBE CBD sing N N 188 JY9 CBH CBI sing N N 189 JY9 CBH CBG sing N N 190 JY9 CBD CBG sing N N 191 JY9 OAB H1 sing N N 192 JY9 OAC H2 sing N N 193 JY9 CBD H3 sing N N 194 JY9 CBD H4 sing N N 195 JY9 CBG H5 sing N N 196 JY9 CBG H6 sing N N 197 JY9 CBH H7 sing N N 198 JY9 CBH H8 sing N N 199 JY9 CBI H9 sing N N 200 JY9 CBI H10 sing N N 201 JY9 CBA H11 sing N N 202 JY9 CAT H12 sing N N 203 JY9 CAS H13 sing N N 204 JY9 CAR H14 sing N N 205 JY9 CAU H15 sing N N 206 JY9 CAU H16 sing N N 207 JY9 NAV H17 sing N N 208 JY9 NAV H18 sing N N 209 JY9 NAH H20 sing N N 210 JY9 CAG H21 sing N N 211 JY9 CAF H22 sing N N 212 JY9 CAM H23 sing N N 213 JY9 CAL H24 sing N N 214 JY9 CAK H25 sing N N 215 JY9 CBF H26 sing N N 216 JY9 CBF H27 sing N N 217 JY9 CBJ H28 sing N N 218 JY9 CBJ H29 sing N N 219 JY9 CBK H30 sing N N 220 JY9 CBK H31 sing N N 221 JY9 OBC H32 sing N N 222 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8Q60 'double helix' 8Q60 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 C DC 6 1_555 -0.318 -0.166 0.038 -2.078 -2.569 1.958 1 A_DG1:DC13_B A 1 ? B 13 ? 19 1 1 A DT 2 1_555 C DA 5 1_555 -0.132 -0.182 0.045 7.443 -12.242 1.633 2 A_DT2:DA12_B A 2 ? B 12 ? 20 1 1 A DT 3 1_555 C DA 4 1_555 -0.135 -0.263 0.080 -2.121 -23.331 2.313 3 A_DT3:DA11_B A 3 ? B 11 ? 20 1 1 A DT 4 1_555 C DA 3 1_555 -0.154 -0.247 0.251 -11.841 -14.328 0.926 4 A_DT4:DA10_B A 4 ? B 10 ? 20 1 1 A DT 5 1_555 C DA 2 1_555 -0.095 -0.163 0.090 -11.448 -14.759 1.166 5 A_DT5:DA9_B A 5 ? B 9 ? 20 1 1 A DG 6 1_555 C DC 1 1_555 -0.173 -0.163 0.477 2.241 -11.708 0.532 6 A_DG6:DC8_B A 6 ? B 8 ? 19 1 1 B DG 1 1_555 D DC 6 1_555 -1.243 0.421 -0.054 -4.896 0.356 20.158 7 D_DG1:DC13_E D 1 ? E 13 ? ? 1 1 B DT 2 1_555 D DA 5 1_555 -0.350 -0.269 0.331 -4.227 -8.710 -5.546 8 D_DT2:DA12_E D 2 ? E 12 ? 20 1 1 B DT 3 1_555 D DA 4 1_555 -1.886 -0.193 0.040 8.578 -6.724 3.765 9 D_DT3:DA11_E D 3 ? E 11 ? 20 1 1 B DT 4 1_555 D DA 3 1_555 -1.380 -0.066 -0.136 15.394 -17.805 5.938 10 D_DT4:DA10_E D 4 ? E 10 ? 20 1 1 B DT 5 1_555 D DA 2 1_555 -0.859 -0.239 -0.104 14.449 -15.081 3.752 11 D_DT5:DA9_E D 5 ? E 9 ? 20 1 1 B DG 6 1_555 D DC 1 1_555 -0.026 -0.093 0.037 2.521 -13.552 5.083 12 D_DG6:DC8_E D 6 ? E 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 C DC 6 1_555 A DT 2 1_555 C DA 5 1_555 -0.050 -0.119 3.092 -0.837 5.813 27.406 -1.542 -0.083 3.003 12.092 1.742 28.017 1 AA_DG1DT2:DA12DC13_BB A 1 ? B 13 ? A 2 ? B 12 ? 1 A DT 2 1_555 C DA 5 1_555 A DT 3 1_555 C DA 4 1_555 -0.234 -0.077 3.381 0.920 -1.798 37.342 0.124 0.489 3.375 -2.806 -1.436 37.394 2 AA_DT2DT3:DA11DA12_BB A 2 ? B 12 ? A 3 ? B 11 ? 1 A DT 3 1_555 C DA 4 1_555 A DT 4 1_555 C DA 3 1_555 0.209 -0.199 3.420 1.141 -1.224 40.845 -0.145 -0.169 3.429 -1.753 -1.635 40.878 3 AA_DT3DT4:DA10DA11_BB A 3 ? B 11 ? A 4 ? B 10 ? 1 A DT 4 1_555 C DA 3 1_555 A DT 5 1_555 C DA 2 1_555 -0.163 -0.157 3.174 0.347 1.476 35.328 -0.469 0.318 3.164 2.430 -0.571 35.359 4 AA_DT4DT5:DA9DA10_BB A 4 ? B 10 ? A 5 ? B 9 ? 1 A DT 5 1_555 C DA 2 1_555 A DG 6 1_555 C DC 1 1_555 0.010 0.338 3.049 -7.018 7.624 36.658 -0.396 -0.857 3.005 11.834 10.894 38.046 5 AA_DT5DG6:DC8DA9_BB A 5 ? B 9 ? A 6 ? B 8 ? 1 B DG 1 1_555 D DC 6 1_555 B DT 2 1_555 D DA 5 1_555 -2.000 -0.982 3.312 -4.465 3.112 23.221 -3.447 3.306 3.471 7.598 10.902 23.842 6 DD_DG1DT2:DA12DC13_EE D 1 ? E 13 ? D 2 ? E 12 ? 1 B DT 2 1_555 D DA 5 1_555 B DT 3 1_555 D DA 4 1_555 0.692 -0.451 3.022 4.572 7.774 28.229 -2.401 -0.461 2.873 15.447 -9.085 29.606 7 DD_DT2DT3:DA11DA12_EE D 2 ? E 12 ? D 3 ? E 11 ? 1 B DT 3 1_555 D DA 4 1_555 B DT 4 1_555 D DA 3 1_555 0.406 0.090 3.056 2.145 -0.525 40.309 0.185 -0.361 3.071 -0.760 -3.110 40.367 8 DD_DT3DT4:DA10DA11_EE D 3 ? E 11 ? D 4 ? E 10 ? 1 B DT 4 1_555 D DA 3 1_555 B DT 5 1_555 D DA 2 1_555 1.257 0.354 3.282 3.292 4.170 33.311 -0.087 -1.617 3.405 7.218 -5.698 33.720 9 DD_DT4DT5:DA9DA10_EE D 4 ? E 10 ? D 5 ? E 9 ? 1 B DT 5 1_555 D DA 2 1_555 B DG 6 1_555 D DC 1 1_555 -0.179 0.967 3.532 -3.422 2.277 46.336 1.016 -0.086 3.577 2.887 4.339 46.508 10 DD_DT5DG6:DC8DA9_EE D 5 ? E 9 ? D 6 ? E 8 ? # _pdbx_audit_support.funding_organization 'European Research Council (ERC)' _pdbx_audit_support.country 'European Union' _pdbx_audit_support.grant_number 101054289 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PUY _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8Q60 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.037712 _atom_sites.fract_transf_matrix[1][2] 0.002864 _atom_sites.fract_transf_matrix[1][3] 0.012076 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033385 _atom_sites.fract_transf_matrix[2][3] 0.010575 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024102 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 MG ? ? ? ? ? ? ? ? ? ? ? MG+2 12 10 3.4988 2.1676 3.8378 4.7542 1.3284 0.1850 0.8497 10.1411 0.5605 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 P 15 15 6.4348 1.9067 4.1793 27.1570 1.7801 0.5260 1.4909 68.1645 1.2671 # loop_ # loop_ #