HEADER OXIDOREDUCTASE 11-AUG-23 8Q6D TITLE ANAEROBIC CRYSTAL STRUCTURE OF HIF PROLYL HYDROXYLASE 2 (PHD2 181-407) TITLE 2 IN COMPLEX WITH HIF2ALPHA-CODD PEPTIDE (523-542), FE(II) AND 2- TITLE 3 OXOGLUTARATE (2OG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 5 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 6 EC: 1.14.11.29; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: EPAS-1,BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP2,CLASS E BASIC COMPND 12 HELIX-LOOP-HELIX PROTEIN 73,BHLHE73,HIF-1-ALPHA-LIKE FACTOR,HLF, COMPND 13 HYPOXIA-INDUCIBLE FACTOR 2-ALPHA,HIF-2-ALPHA,HIF2-ALPHA,MEMBER OF PAS COMPND 14 PROTEIN 2,PAS DOMAIN-CONTAINING PROTEIN 2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS 2OG OXYGENASES, OXYGEN SENSOR, JELLY-ROLL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.FIORINI,W.D.FIGG JR,C.J.SCHOFIELD REVDAT 1 21-AUG-24 8Q6D 0 JRNL AUTH G.FIORINI,W.D.FIGG JR,C.J.SCHOFIELD JRNL TITL HIF PROLYL HYDROXYLASE 2 IN COMPLEX WITH HIF2ALPHA-CODD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 42585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5500 - 3.4500 1.00 2938 146 0.1663 0.1855 REMARK 3 2 3.4500 - 2.7400 1.00 2806 124 0.1681 0.2009 REMARK 3 3 2.7400 - 2.3900 1.00 2738 145 0.1650 0.1794 REMARK 3 4 2.3900 - 2.1800 1.00 2749 140 0.1522 0.1751 REMARK 3 5 2.1800 - 2.0200 1.00 2717 132 0.1529 0.1619 REMARK 3 6 2.0200 - 1.9000 1.00 2695 145 0.1578 0.1775 REMARK 3 7 1.9000 - 1.8100 1.00 2700 150 0.1637 0.1864 REMARK 3 8 1.8100 - 1.7300 1.00 2675 149 0.1695 0.2093 REMARK 3 9 1.7300 - 1.6600 1.00 2721 135 0.1738 0.2170 REMARK 3 10 1.6600 - 1.6000 1.00 2671 133 0.1743 0.2216 REMARK 3 11 1.6000 - 1.5500 1.00 2691 157 0.1713 0.1826 REMARK 3 12 1.5500 - 1.5100 1.00 2655 146 0.1822 0.2070 REMARK 3 13 1.5100 - 1.4700 1.00 2650 129 0.1894 0.2334 REMARK 3 14 1.4700 - 1.4300 1.00 2681 144 0.2139 0.2425 REMARK 3 15 1.4300 - 1.4000 0.89 2401 122 0.2534 0.2599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1954 REMARK 3 ANGLE : 0.899 2659 REMARK 3 CHIRALITY : 0.074 284 REMARK 3 PLANARITY : 0.011 353 REMARK 3 DIHEDRAL : 6.519 283 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9163 -6.1611 -9.4118 REMARK 3 T TENSOR REMARK 3 T11: 0.2537 T22: 0.2498 REMARK 3 T33: 0.3045 T12: 0.0503 REMARK 3 T13: 0.1085 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 8.5283 L22: 7.2057 REMARK 3 L33: 2.1275 L12: 1.7849 REMARK 3 L13: 0.1862 L23: 0.4289 REMARK 3 S TENSOR REMARK 3 S11: 0.2477 S12: -0.3483 S13: 1.0991 REMARK 3 S21: 0.2326 S22: 0.1257 S23: 0.2319 REMARK 3 S31: -0.6367 S32: -0.1964 S33: -0.3967 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5264 -3.1106 -17.6085 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.1342 REMARK 3 T33: 0.1634 T12: 0.0265 REMARK 3 T13: 0.0455 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.9513 L22: 0.5128 REMARK 3 L33: 1.0168 L12: -0.4845 REMARK 3 L13: -0.1411 L23: 0.0535 REMARK 3 S TENSOR REMARK 3 S11: 0.1489 S12: 0.1124 S13: 0.4414 REMARK 3 S21: 0.1198 S22: -0.0440 S23: 0.0910 REMARK 3 S31: -0.2631 S32: -0.0481 S33: -0.1058 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6015 -8.1445 -15.0762 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.1369 REMARK 3 T33: 0.1289 T12: -0.0074 REMARK 3 T13: 0.0063 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 2.4760 L22: 1.6135 REMARK 3 L33: 2.1445 L12: -0.3164 REMARK 3 L13: -1.2667 L23: 0.1247 REMARK 3 S TENSOR REMARK 3 S11: 0.0786 S12: -0.0121 S13: 0.2003 REMARK 3 S21: 0.0901 S22: -0.0269 S23: -0.1343 REMARK 3 S31: -0.1766 S32: 0.1555 S33: -0.0626 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6584 -13.2904 -11.5058 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.0639 REMARK 3 T33: 0.1367 T12: 0.0349 REMARK 3 T13: 0.0183 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 3.7110 L22: 2.4256 REMARK 3 L33: 3.5387 L12: 1.7133 REMARK 3 L13: -1.3642 L23: -1.4731 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: -0.1283 S13: 0.0207 REMARK 3 S21: 0.1067 S22: -0.1159 S23: 0.0317 REMARK 3 S31: -0.0709 S32: 0.0328 S33: -0.0242 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5887 -11.2559 -24.4803 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.1552 REMARK 3 T33: 0.1218 T12: 0.0056 REMARK 3 T13: 0.0067 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 1.2918 L22: 1.9983 REMARK 3 L33: 3.0131 L12: 0.4308 REMARK 3 L13: -0.3321 L23: -1.4009 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.2524 S13: 0.0838 REMARK 3 S21: -0.1427 S22: 0.0367 S23: 0.0873 REMARK 3 S31: -0.0181 S32: 0.0022 S33: -0.0064 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 343 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4013 -19.6167 -28.7998 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.2672 REMARK 3 T33: 0.1341 T12: 0.0289 REMARK 3 T13: -0.0018 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 7.9102 L22: 9.2056 REMARK 3 L33: 5.5784 L12: 6.9001 REMARK 3 L13: 1.8350 L23: 0.9960 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: 0.1835 S13: -0.1073 REMARK 3 S21: -0.0696 S22: 0.0382 S23: 0.0917 REMARK 3 S31: 0.0637 S32: -0.5737 S33: -0.0698 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8772 -12.3557 -24.4116 REMARK 3 T TENSOR REMARK 3 T11: 0.0908 T22: 0.1615 REMARK 3 T33: 0.1021 T12: 0.0210 REMARK 3 T13: -0.0048 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 1.9582 L22: 3.0029 REMARK 3 L33: 2.2786 L12: 0.8383 REMARK 3 L13: -0.5710 L23: -0.5235 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: 0.2757 S13: 0.0388 REMARK 3 S21: -0.0496 S22: -0.0522 S23: 0.0955 REMARK 3 S31: -0.1121 S32: -0.0774 S33: 0.0267 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 382 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5711 -18.2651 -10.4320 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.1514 REMARK 3 T33: 0.1339 T12: 0.0067 REMARK 3 T13: 0.0071 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.0759 L22: 6.3012 REMARK 3 L33: 5.4767 L12: -1.3231 REMARK 3 L13: 1.4577 L23: -4.9011 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: 0.0441 S13: -0.0335 REMARK 3 S21: 0.0957 S22: -0.0305 S23: -0.0658 REMARK 3 S31: 0.0855 S32: 0.1106 S33: -0.0147 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 523 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6237 -28.2832 -23.8607 REMARK 3 T TENSOR REMARK 3 T11: 0.3378 T22: 0.1956 REMARK 3 T33: 0.3382 T12: 0.0379 REMARK 3 T13: 0.0086 T23: -0.0504 REMARK 3 L TENSOR REMARK 3 L11: 6.8730 L22: 3.7525 REMARK 3 L33: 2.2247 L12: 4.3360 REMARK 3 L13: -0.2001 L23: -0.6483 REMARK 3 S TENSOR REMARK 3 S11: -0.0958 S12: 0.4856 S13: -1.3282 REMARK 3 S21: -0.8134 S22: 0.0689 S23: -0.6702 REMARK 3 S31: 1.0217 S32: 0.0463 S33: -0.1213 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 530 THROUGH 542 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6499 -16.1044 -8.0221 REMARK 3 T TENSOR REMARK 3 T11: 0.2307 T22: 0.2856 REMARK 3 T33: 0.2112 T12: 0.0175 REMARK 3 T13: -0.0292 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 3.2932 L22: 3.4561 REMARK 3 L33: 6.6455 L12: -3.3528 REMARK 3 L13: -4.1098 L23: 4.4433 REMARK 3 S TENSOR REMARK 3 S11: -0.1987 S12: -0.5618 S13: 0.2276 REMARK 3 S21: 0.5097 S22: 0.5502 S23: -0.4136 REMARK 3 S31: 0.5152 S32: 1.0020 S33: -0.2928 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Q6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42651 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-35% PEG 4K, 0.2 AMMONIUM ACETATE, REMARK 280 SODIUM AMMONIUM ACETATE TRIHYDRATE PH (4.1-5.6), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 19.03500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.37500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 19.03500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.37500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 GLU A 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 LYS A 192 CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLU A 217 CD OE1 OE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 LYS A 249 NZ REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 ASN A 284 CG OD1 ND2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 332 CD CE NZ REMARK 470 LYS A 337 CE NZ REMARK 470 GLU A 348 CD OE1 OE2 REMARK 470 LYS A 359 NZ REMARK 470 LYS A 402 CE NZ REMARK 470 GLU B 523 OE1 OE2 REMARK 470 ASP B 536 CG OD1 OD2 REMARK 470 GLU B 538 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 286 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 685 O HOH A 762 2.03 REMARK 500 NH2 ARG A 281 O HOH A 601 2.07 REMARK 500 OD1 ASN A 293 O HOH A 602 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 224 NH2 ARG A 370 1565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -57.69 -123.61 REMARK 500 LYS A 244 -148.72 -98.89 REMARK 500 PHE A 346 73.24 -112.63 REMARK 500 ASP B 539 150.61 100.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 538 ASP B 539 -149.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 92.9 REMARK 620 3 HIS A 374 NE2 86.5 90.6 REMARK 620 4 AKG A 502 O5 94.0 173.1 89.7 REMARK 620 5 AKG A 502 O2 94.7 102.3 166.9 77.3 REMARK 620 6 HOH A 622 O 175.6 89.2 89.7 83.9 88.6 REMARK 620 N 1 2 3 4 5 DBREF 8Q6D A 181 407 UNP Q9GZT9 EGLN1_HUMAN 181 407 DBREF 8Q6D B 523 542 UNP Q99814 EPAS1_HUMAN 523 542 SEQADV 8Q6D GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q6D SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q6D HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q6D MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q6D ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q6D SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQRES 1 A 233 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 233 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 233 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 233 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 233 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 233 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 233 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 233 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 233 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 233 ILE ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 233 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 233 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 233 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 233 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 233 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 233 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 233 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 233 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU SEQRES 1 B 20 GLU LEU ASP LEU GLU THR LEU ALA PRO TYR ILE PRO MET SEQRES 2 B 20 ASP GLY GLU ASP PHE GLN LEU HET FE A 501 1 HET AKG A 502 14 HETNAM FE FE (III) ION HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 3 FE FE 3+ FORMUL 4 AKG C5 H6 O5 FORMUL 5 HOH *234(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 SER A 247 ILE A 251 5 5 HELIX 5 AA5 CYS A 266 CYS A 283 1 18 HELIX 6 AA6 ASP A 335 GLY A 340 1 6 HELIX 7 AA7 ALA A 393 THR A 405 1 13 HELIX 8 AA8 ASP B 525 LEU B 529 5 5 SHEET 1 AA1 7 ILE A 207 VAL A 210 0 SHEET 2 AA1 7 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA1 7 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA1 7 THR A 382 ASP A 392 -1 O TYR A 390 N CYS A 323 SHEET 5 AA1 7 ALA A 298 PRO A 304 -1 N MET A 299 O THR A 387 SHEET 6 AA1 7 LYS A 255 ILE A 259 -1 N THR A 257 O VAL A 300 SHEET 7 AA1 7 THR A 236 ASP A 237 -1 N THR A 236 O ILE A 256 SHEET 1 AA2 6 ILE A 207 VAL A 210 0 SHEET 2 AA2 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA2 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA2 6 THR A 382 ASP A 392 -1 O TYR A 390 N CYS A 323 SHEET 5 AA2 6 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 6 AA2 6 PHE B 540 GLN B 541 -1 O PHE B 540 N ARG A 295 SHEET 1 AA3 4 THR A 308 HIS A 313 0 SHEET 2 AA3 4 HIS A 374 ALA A 379 -1 O HIS A 374 N HIS A 313 SHEET 3 AA3 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA3 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 LINK NE2 HIS A 313 FE FE A 501 1555 1555 2.20 LINK OD1 ASP A 315 FE FE A 501 1555 1555 2.12 LINK NE2 HIS A 374 FE FE A 501 1555 1555 2.15 LINK FE FE A 501 O5 AKG A 502 1555 1555 2.21 LINK FE FE A 501 O2 AKG A 502 1555 1555 2.08 LINK FE FE A 501 O HOH A 622 1555 1555 2.20 CRYST1 38.070 42.630 130.750 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026267 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007648 0.00000