HEADER OXIDOREDUCTASE 11-AUG-23 8Q6E TITLE AEROBIC CRYSTAL STRUCTURE OF HIF PROLYL HYDROXYLASE 2 (PHD2 181-407) TITLE 2 IN COMPLEX WITH FE(III), 2-OXOGLUTARATE (2OG) AND HIF2ALPHA-CODD TITLE 3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 5 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 6 EC: 1.14.11.29; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: EPAS-1,BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP2,CLASS E BASIC COMPND 12 HELIX-LOOP-HELIX PROTEIN 73,BHLHE73,HIF-1-ALPHA-LIKE FACTOR,HLF, COMPND 13 HYPOXIA-INDUCIBLE FACTOR 2-ALPHA,HIF-2-ALPHA,HIF2-ALPHA,MEMBER OF PAS COMPND 14 PROTEIN 2,PAS DOMAIN-CONTAINING PROTEIN 2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: EPAS1, BHLHE73, HIF2A, MOP2, PASD2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS 2OG OXYGENASES, OXYGEN SENSOR, JELLY-ROLL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.FIORINI,W.D.FIGG JR,C.J.SCHOFIELD REVDAT 1 21-AUG-24 8Q6E 0 JRNL AUTH G.FIORINI,W.D.FIGG JR,C.J.SCHOFIELD JRNL TITL HIF PROLYL HYDROXYLASE 2 IN COMPLEX WITH HIF2ALPHA-CODD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7700 - 3.4500 1.00 2970 143 0.1665 0.1947 REMARK 3 2 3.4500 - 2.7400 1.00 2770 163 0.1666 0.1645 REMARK 3 3 2.7400 - 2.3900 1.00 2764 145 0.1698 0.1927 REMARK 3 4 2.3900 - 2.1700 1.00 2778 139 0.1550 0.1800 REMARK 3 5 2.1700 - 2.0200 1.00 2734 136 0.1535 0.1854 REMARK 3 6 2.0200 - 1.9000 1.00 2720 140 0.1598 0.2100 REMARK 3 7 1.9000 - 1.8000 1.00 2735 134 0.1626 0.1935 REMARK 3 8 1.8000 - 1.7300 1.00 2700 138 0.1701 0.2101 REMARK 3 9 1.7300 - 1.6600 1.00 2701 138 0.1896 0.2391 REMARK 3 10 1.6600 - 1.6000 1.00 2726 139 0.2135 0.2479 REMARK 3 11 1.6000 - 1.5500 1.00 2686 141 0.2294 0.2811 REMARK 3 12 1.5500 - 1.5100 1.00 2668 157 0.2525 0.2981 REMARK 3 13 1.5100 - 1.4700 1.00 2691 118 0.2700 0.2749 REMARK 3 14 1.4700 - 1.4300 1.00 2697 146 0.3103 0.3402 REMARK 3 15 1.4300 - 1.4000 1.00 2656 161 0.3761 0.3686 REMARK 3 16 1.4000 - 1.3700 0.97 2583 161 0.4315 0.4658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1961 REMARK 3 ANGLE : 1.256 2674 REMARK 3 CHIRALITY : 0.094 285 REMARK 3 PLANARITY : 0.016 357 REMARK 3 DIHEDRAL : 6.516 286 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5724 24.6580 11.9505 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.1695 REMARK 3 T33: 0.2677 T12: 0.0166 REMARK 3 T13: -0.0267 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 0.8630 L22: 2.0862 REMARK 3 L33: 3.4112 L12: -0.4590 REMARK 3 L13: 0.6688 L23: -0.7448 REMARK 3 S TENSOR REMARK 3 S11: -0.1230 S12: -0.0732 S13: 0.2161 REMARK 3 S21: 0.0999 S22: 0.0382 S23: -0.0422 REMARK 3 S31: -0.2104 S32: -0.2101 S33: 0.0794 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6730 6.5342 27.1875 REMARK 3 T TENSOR REMARK 3 T11: 0.3830 T22: 0.2838 REMARK 3 T33: 0.2644 T12: 0.0303 REMARK 3 T13: -0.0838 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 1.3316 L22: 6.4602 REMARK 3 L33: 2.7411 L12: -0.3163 REMARK 3 L13: -0.2626 L23: 3.2251 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: -0.2127 S13: 0.0518 REMARK 3 S21: 0.7870 S22: 0.0908 S23: -0.5775 REMARK 3 S31: -0.0535 S32: -0.0127 S33: -0.0794 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3272 5.3386 11.6165 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.1393 REMARK 3 T33: 0.2043 T12: 0.0007 REMARK 3 T13: -0.0295 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.6375 L22: 1.7550 REMARK 3 L33: 1.1399 L12: -0.6199 REMARK 3 L13: 0.2131 L23: -0.2383 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: -0.0928 S13: -0.1185 REMARK 3 S21: 0.1143 S22: 0.0372 S23: -0.0417 REMARK 3 S31: 0.0544 S32: -0.0504 S33: -0.0053 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6419 9.5578 10.5279 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.1186 REMARK 3 T33: 0.2296 T12: 0.0020 REMARK 3 T13: -0.0304 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.3064 L22: 1.3850 REMARK 3 L33: 2.0982 L12: 0.0240 REMARK 3 L13: 0.8537 L23: 0.1006 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: -0.0334 S13: -0.0530 REMARK 3 S21: 0.0786 S22: -0.0127 S23: -0.2503 REMARK 3 S31: -0.0327 S32: 0.1083 S33: -0.0100 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 343 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7063 17.7234 7.7615 REMARK 3 T TENSOR REMARK 3 T11: 0.1923 T22: 0.1534 REMARK 3 T33: 0.2879 T12: 0.0089 REMARK 3 T13: -0.0331 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.4378 L22: 1.1915 REMARK 3 L33: 1.7162 L12: 0.0681 REMARK 3 L13: -0.1633 L23: 0.3450 REMARK 3 S TENSOR REMARK 3 S11: -0.0455 S12: 0.0270 S13: 0.2399 REMARK 3 S21: -0.0219 S22: 0.0306 S23: -0.1873 REMARK 3 S31: -0.1199 S32: 0.1220 S33: 0.0050 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 370 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1288 10.4648 5.5491 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.0949 REMARK 3 T33: 0.2402 T12: 0.0100 REMARK 3 T13: -0.0089 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 6.0120 L22: 3.7961 REMARK 3 L33: 8.2208 L12: -2.4702 REMARK 3 L13: 4.9998 L23: -4.3148 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: 0.0117 S13: 0.1344 REMARK 3 S21: -0.1005 S22: -0.0803 S23: -0.4305 REMARK 3 S31: 0.1182 S32: 0.1459 S33: 0.0129 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 382 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5910 5.5421 3.3097 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.1516 REMARK 3 T33: 0.1916 T12: -0.0053 REMARK 3 T13: -0.0009 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 4.7408 L22: 1.2841 REMARK 3 L33: 5.4604 L12: 1.0185 REMARK 3 L13: 4.3162 L23: 1.0713 REMARK 3 S TENSOR REMARK 3 S11: -0.0899 S12: 0.1163 S13: -0.0146 REMARK 3 S21: -0.0455 S22: 0.0362 S23: -0.0241 REMARK 3 S31: -0.0033 S32: -0.0234 S33: 0.0518 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 524 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9089 1.6881 -5.1453 REMARK 3 T TENSOR REMARK 3 T11: 0.3208 T22: 0.2297 REMARK 3 T33: 0.3075 T12: -0.0004 REMARK 3 T13: 0.0274 T23: -0.0552 REMARK 3 L TENSOR REMARK 3 L11: 8.9308 L22: 2.6290 REMARK 3 L33: 2.9246 L12: 0.5458 REMARK 3 L13: 3.8090 L23: -1.6025 REMARK 3 S TENSOR REMARK 3 S11: -0.0349 S12: 0.7836 S13: -0.5856 REMARK 3 S21: -1.0607 S22: 0.1132 S23: -0.5262 REMARK 3 S31: 0.8700 S32: 0.1563 S33: -0.0289 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 530 THROUGH 542 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9632 2.7972 6.4307 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.2343 REMARK 3 T33: 0.3594 T12: -0.0156 REMARK 3 T13: 0.0055 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 4.6868 L22: 3.5733 REMARK 3 L33: 6.1893 L12: -3.7527 REMARK 3 L13: -5.2622 L23: 3.7732 REMARK 3 S TENSOR REMARK 3 S11: -0.1430 S12: 0.4644 S13: -0.6197 REMARK 3 S21: 0.1307 S22: -0.2026 S23: 0.4907 REMARK 3 S31: 0.3313 S32: -0.5937 S33: 0.2861 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Q6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52821 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 43.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (10-35%) PEG 4K, 0.2 M AMMONIUM REMARK 280 ACETATE , 0.1 M SODIUM AMMONIUM ACETATE TRIHYDRATE PH (4.1-5.6), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 65.45000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 65.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 GLU A 407 REMARK 465 GLU B 523 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 216 CE NZ REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 GLN A 221 CD OE1 NE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 LYS A 249 NZ REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 ASN A 284 CG OD1 ND2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 ASN A 318 CG OD1 ND2 REMARK 470 LYS A 332 NZ REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 LEU B 524 CD1 CD2 REMARK 470 ASP B 536 CG OD1 OD2 REMARK 470 GLU B 538 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 216 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 243 O ASP A 246 1.58 REMARK 500 O HOH A 636 O HOH A 788 1.97 REMARK 500 O HOH A 746 O HOH A 783 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 766 O HOH A 766 2565 1.79 REMARK 500 O HOH A 739 O HOH A 766 2565 2.07 REMARK 500 OD2 ASP A 224 NH2 ARG A 370 1556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 283 CB CYS A 283 SG -0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 320 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -56.47 -126.73 REMARK 500 LYS A 244 -141.93 -131.75 REMARK 500 LEU A 330 38.63 -142.00 REMARK 500 PHE A 346 72.03 -118.16 REMARK 500 ASP A 369 -167.70 -79.24 REMARK 500 GLU B 538 85.71 67.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 824 DISTANCE = 6.13 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MG A 501 REMARK 615 MG A 502 REMARK 615 MG A 503 REMARK 615 CL A 504 REMARK 615 CL A 505 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 506 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 90.4 REMARK 620 3 HIS A 374 NE2 85.9 88.6 REMARK 620 4 AKG A 507 O1 91.9 99.2 171.9 REMARK 620 5 AKG A 507 O5 95.9 173.7 91.7 80.7 REMARK 620 6 HOH A 617 O 176.6 87.7 91.3 91.2 86.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8Q6E RELATED DB: PDB DBREF 8Q6E A 181 407 UNP Q9GZT9 EGLN1_HUMAN 181 407 DBREF 8Q6E B 523 542 UNP Q99814 EPAS1_HUMAN 523 542 SEQADV 8Q6E GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q6E SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q6E HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q6E MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q6E ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q6E SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQRES 1 A 233 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 233 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 233 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 233 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 233 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 233 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 233 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 233 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 233 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 233 ILE ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 233 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 233 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 233 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 233 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 233 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 233 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 233 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 233 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU SEQRES 1 B 20 GLU LEU ASP LEU GLU THR LEU ALA PRO TYR ILE PRO MET SEQRES 2 B 20 ASP GLY GLU ASP PHE GLN LEU HET MG A 501 1 HET MG A 502 1 HET MG A 503 1 HET CL A 504 1 HET CL A 505 1 HET FE A 506 1 HET AKG A 507 14 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM FE FE (III) ION HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 3 MG 3(MG 2+) FORMUL 6 CL 2(CL 1-) FORMUL 8 FE FE 3+ FORMUL 9 AKG C5 H6 O5 FORMUL 10 HOH *246(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 SER A 247 ILE A 251 5 5 HELIX 5 AA5 CYS A 266 CYS A 283 1 18 HELIX 6 AA6 ASP A 335 GLY A 340 1 6 HELIX 7 AA7 ALA A 393 THR A 405 1 13 HELIX 8 AA8 ASP B 525 LEU B 529 5 5 SHEET 1 AA1 7 ILE A 207 VAL A 210 0 SHEET 2 AA1 7 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA1 7 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA1 7 THR A 382 ASP A 392 -1 O TYR A 390 N CYS A 323 SHEET 5 AA1 7 ALA A 298 PRO A 304 -1 N MET A 299 O THR A 387 SHEET 6 AA1 7 LYS A 255 ILE A 259 -1 N THR A 257 O VAL A 300 SHEET 7 AA1 7 THR A 236 ASP A 237 -1 N THR A 236 O ILE A 256 SHEET 1 AA2 6 ILE A 207 VAL A 210 0 SHEET 2 AA2 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA2 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA2 6 THR A 382 ASP A 392 -1 O TYR A 390 N CYS A 323 SHEET 5 AA2 6 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 6 AA2 6 PHE B 540 GLN B 541 -1 O PHE B 540 N ARG A 295 SHEET 1 AA3 4 THR A 308 HIS A 313 0 SHEET 2 AA3 4 HIS A 374 ALA A 379 -1 O HIS A 374 N HIS A 313 SHEET 3 AA3 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA3 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 LINK NE2 HIS A 313 FE FE A 506 1555 1555 2.18 LINK OD1 ASP A 315 FE FE A 506 1555 1555 2.12 LINK NE2 HIS A 374 FE FE A 506 1555 1555 2.13 LINK MG MG A 501 O HOH A 744 1555 1545 2.21 LINK FE FE A 506 O1 AKG A 507 1555 1555 2.02 LINK FE FE A 506 O5 AKG A 507 1555 1555 2.08 LINK FE FE A 506 O HOH A 617 1555 1555 2.21 CRYST1 130.900 38.120 42.770 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023381 0.00000