HEADER OXIDOREDUCTASE 15-AUG-23 8Q6Z TITLE CRYSTAL STRUCTURE OF CYTOCHROME P450 GYMB1 FROM STREPTOMYCES TITLE 2 FLAVIDOVIRENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GYMB1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES FLAVIDOVIRENS DSM 40150; SOURCE 3 ORGANISM_TAXID: 1123319; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEOBASE TRANSFERASE, CYTOCHROME P450, MYCOCYCLOSIN SYNTHETASE, KEYWDS 2 PRISM-LIKE FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.FREYTAG,T.KELM,T.STEHLE,G.ZOCHER REVDAT 1 26-JUN-24 8Q6Z 0 JRNL AUTH J.FREYTAG,A.MARTIN,J.C.MULLER,T.KELM,T.STEHLE,S.M.LI, JRNL AUTH 2 G.ZOCHER JRNL TITL INTRAMOLECULAR COUPLING AND NUCLEOBASE TRANSFER - HOW JRNL TITL 2 CYTOCHROME P450 ENZYMES GYMBX ESTABLISH THEIR JRNL TITL 3 CHEMOSELECTIVITY JRNL REF CHEMCATCHEM V. 16 2024 JRNL REFN ESSN 1867-3899 JRNL DOI 10.1002/CCTC.202481002 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1909 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2613 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 1.72000 REMARK 3 B12 (A**2) : -0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.199 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3110 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2959 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4256 ; 1.653 ; 1.669 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6829 ; 1.328 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 5.918 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;27.253 ;20.987 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;13.559 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.040 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3486 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 644 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1559 ; 1.102 ; 3.023 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1558 ; 1.094 ; 3.023 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1947 ; 1.723 ; 4.529 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1948 ; 1.722 ; 4.529 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1551 ; 1.388 ; 3.276 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1552 ; 1.388 ; 3.278 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2310 ; 2.242 ; 4.851 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3513 ; 4.904 ;37.537 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3466 ; 4.832 ;37.060 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7934 7.0909 6.0255 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.0261 REMARK 3 T33: 0.1665 T12: 0.0031 REMARK 3 T13: -0.0373 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.9597 L22: 3.4158 REMARK 3 L33: 3.2608 L12: 2.0954 REMARK 3 L13: 0.3526 L23: 0.0310 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: -0.0885 S13: -0.3972 REMARK 3 S21: -0.0451 S22: 0.0726 S23: -0.2576 REMARK 3 S31: 0.3420 S32: 0.1654 S33: -0.1028 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): -33.1029 33.9566 0.7872 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0566 REMARK 3 T33: 0.1309 T12: -0.0394 REMARK 3 T13: -0.0085 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 4.3022 L22: 1.7725 REMARK 3 L33: 2.2362 L12: 0.8976 REMARK 3 L13: 0.3688 L23: -0.1678 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: 0.1220 S13: -0.1763 REMARK 3 S21: -0.1205 S22: 0.0308 S23: 0.2947 REMARK 3 S31: 0.0836 S32: -0.2866 S33: 0.0378 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): -35.0572 30.4286 6.6990 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0839 REMARK 3 T33: 0.1159 T12: -0.0221 REMARK 3 T13: -0.0128 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 2.3545 L22: 1.1969 REMARK 3 L33: 3.4139 L12: -0.1989 REMARK 3 L13: -1.2843 L23: 0.4304 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: 0.1303 S13: 0.0277 REMARK 3 S21: -0.1330 S22: -0.0485 S23: 0.2051 REMARK 3 S31: -0.1346 S32: -0.3899 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 266 A 371 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1292 17.4349 -4.2872 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.0690 REMARK 3 T33: 0.1226 T12: -0.0485 REMARK 3 T13: 0.0127 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 1.3813 L22: 2.5415 REMARK 3 L33: 1.3925 L12: 1.1953 REMARK 3 L13: -0.1057 L23: -0.8060 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: 0.1911 S13: -0.1692 REMARK 3 S21: -0.3071 S22: 0.1259 S23: -0.0704 REMARK 3 S31: 0.1760 S32: 0.0575 S33: -0.0618 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 372 A 398 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0353 27.7965 8.4384 REMARK 3 T TENSOR REMARK 3 T11: 0.0553 T22: 0.0902 REMARK 3 T33: 0.0531 T12: -0.0103 REMARK 3 T13: 0.0018 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 4.5350 L22: 6.0596 REMARK 3 L33: 1.5566 L12: 3.6259 REMARK 3 L13: -1.8239 L23: -1.7220 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: 0.1165 S13: -0.1985 REMARK 3 S21: -0.2031 S22: -0.0404 S23: -0.0121 REMARK 3 S31: 0.1582 S32: 0.1192 S33: 0.1028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8Q6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38173 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 49.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 8000, 20% GLYCEROL, 40 MM REMARK 280 KH2PO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.42667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.85333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.85333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.42667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 ASP A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 6 OG1 CG2 REMARK 470 LYS A 63 CD CE NZ REMARK 470 ARG A 179 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 196 CD REMARK 470 ASP A 215 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 395 CA - C - O ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 84 47.41 -99.08 REMARK 500 PHE A 137 -66.93 -130.91 REMARK 500 THR A 199 -153.65 -126.66 REMARK 500 ASN A 211 109.45 -51.65 REMARK 500 ASP A 281 -164.93 -124.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 753 DISTANCE = 6.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 344 SG REMARK 620 2 HEM A 401 NA 100.6 REMARK 620 3 HEM A 401 NB 89.3 88.0 REMARK 620 4 HEM A 401 NC 90.4 168.7 89.8 REMARK 620 5 HEM A 401 ND 99.8 91.3 170.9 89.1 REMARK 620 N 1 2 3 4 DBREF 8Q6Z A 1 395 PDB 8Q6Z 8Q6Z 1 395 SEQRES 1 A 395 MET THR SER THR ASP THR LEU LEU ASP PHE PRO PHE SER SEQRES 2 A 395 PRO ARG GLY ASP GLN LEU PRO PRO GLU ILE GLU ALA LEU SEQRES 3 A 395 ARG ALA GLU PRO VAL LYS ARG VAL ARG THR ILE ALA GLY SEQRES 4 A 395 ASP PRO ALA TRP LEU VAL SER SER TYR ALA LEU CYS LYS SEQRES 5 A 395 GLN VAL LEU GLU ASP PRO ARG PHE SER LEU LYS ASP THR SEQRES 6 A 395 SER ALA PRO GLY VAL PRO ARG GLN TYR ALA LEU THR ILE SEQRES 7 A 395 PRO PRO GLU VAL VAL ASN ASN MET GLY ASN ILE THR GLY SEQRES 8 A 395 ALA GLY LEU ARG LYS ALA VAL LEU LYS ALA ILE ASN PRO SEQRES 9 A 395 LYS THR ASP GLY LEU THR ASP TRP MET ARG ALA HIS ALA SEQRES 10 A 395 ALA THR LEU VAL ASP ASP ILE LEU ASP TYR GLY PRO PRO SEQRES 11 A 395 VAL ASP LEU ARG GLY ARG PHE THR ASN PRO TYR ALA GLU SEQRES 12 A 395 HIS LEU HIS CYS ARG ILE LEU GLY ILE PRO GLN ALA ASP SEQRES 13 A 395 ALA PRO ARG LEU ALA ALA SER LEU ASP ILE ALA PHE MET SEQRES 14 A 395 ASN SER ALA CYS PRO ILE THR GLY ALA ARG LEU ASN TRP SEQRES 15 A 395 ASP ARG ASP ILE ALA TYR MET VAL ASP ARG LEU ASP ASP SEQRES 16 A 395 PRO ALA THR THR GLY LEU MET ALA GLU LEU ALA ALA LEU SEQRES 17 A 395 ARG GLY ASN PRO ASP TYR ASP HIS LEU THR ASP GLU MET SEQRES 18 A 395 LEU ALA THR VAL GLY VAL THR MET PHE GLY ALA GLY VAL SEQRES 19 A 395 ILE SER THR MET GLY PHE LEU THR MET ALA ILE PHE SER SEQRES 20 A 395 LEU ILE GLN HIS PRO ASP VAL TRP GLU GLN LEU ARG LYS SEQRES 21 A 395 ALA PRO GLU LYS ILE PRO ALA ALA VAL ASP GLU LEU LEU SEQRES 22 A 395 ARG VAL ASN LEU SER ILE ALA ASP GLY LEU PRO ARG LEU SEQRES 23 A 395 ALA LEU GLU ASP VAL ARG LEU GLY ASP VAL GLU VAL LYS SEQRES 24 A 395 LYS GLY GLU LEU VAL LEU VAL LEU VAL GLU ALA ALA ASN SEQRES 25 A 395 THR ASP PRO ALA MET PHE PRO ASP PRO HIS THR VAL ASP SEQRES 26 A 395 ILE ASP ARG ALA ASN ALA GLY ALA HIS LEU SER PHE GLY SEQRES 27 A 395 GLY GLY ALA HIS TYR CYS PRO ALA THR ALA LEU GLY LYS SEQRES 28 A 395 LYS HIS ALA GLU ILE ALA ILE GLU VAL LEU LEU GLU ARG SEQRES 29 A 395 MET PRO GLY LEU ARG LEU ALA VAL PRO VAL GLU GLN LEU SEQRES 30 A 395 VAL TRP ARG THR ARG PHE MET LYS ARG ILE PRO GLU ARG SEQRES 31 A 395 LEU PRO ILE ALA TRP HET HEM A 401 43 HET GOL A 402 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *253(H2 O) HELIX 1 AA1 PRO A 21 ARG A 27 1 7 HELIX 2 AA2 SER A 47 ASP A 57 1 11 HELIX 3 AA3 LEU A 62 ALA A 67 5 6 HELIX 4 AA4 PRO A 79 VAL A 83 5 5 HELIX 5 AA5 ASN A 84 ALA A 92 1 9 HELIX 6 AA6 LEU A 94 ILE A 102 1 9 HELIX 7 AA7 LYS A 105 ASP A 107 5 3 HELIX 8 AA8 GLY A 108 GLY A 128 1 21 HELIX 9 AA9 LEU A 133 PHE A 137 1 5 HELIX 10 AB1 PHE A 137 GLY A 151 1 15 HELIX 11 AB2 PRO A 153 ALA A 155 5 3 HELIX 12 AB3 ASP A 156 SER A 163 1 8 HELIX 13 AB4 SER A 163 PHE A 168 1 6 HELIX 14 AB5 ILE A 175 ASP A 194 1 20 HELIX 15 AB6 THR A 199 LEU A 208 1 10 HELIX 16 AB7 ASN A 211 ASP A 215 5 5 HELIX 17 AB8 THR A 218 HIS A 251 1 34 HELIX 18 AB9 HIS A 251 ALA A 261 1 11 HELIX 19 AC1 LYS A 264 ASN A 276 1 13 HELIX 20 AC2 LEU A 307 ASN A 312 1 6 HELIX 21 AC3 ASN A 330 HIS A 334 5 5 HELIX 22 AC4 GLY A 339 TYR A 343 5 5 HELIX 23 AC5 ALA A 346 MET A 365 1 20 HELIX 24 AC6 PRO A 373 LEU A 377 5 5 SHEET 1 AA1 6 LEU A 8 ASP A 9 0 SHEET 2 AA1 6 VAL A 31 ARG A 35 1 O ARG A 35 N LEU A 8 SHEET 3 AA1 6 PRO A 41 VAL A 45 -1 O LEU A 44 N LYS A 32 SHEET 4 AA1 6 LEU A 303 VAL A 306 1 O LEU A 305 N TRP A 43 SHEET 5 AA1 6 LEU A 283 ALA A 287 -1 N ARG A 285 O VAL A 304 SHEET 6 AA1 6 PHE A 60 SER A 61 -1 N SER A 61 O LEU A 286 SHEET 1 AA2 3 VAL A 131 ASP A 132 0 SHEET 2 AA2 3 PRO A 392 ALA A 394 -1 O ILE A 393 N VAL A 131 SHEET 3 AA2 3 ARG A 369 LEU A 370 -1 N ARG A 369 O ALA A 394 SHEET 1 AA3 2 VAL A 291 LEU A 293 0 SHEET 2 AA3 2 VAL A 296 VAL A 298 -1 O VAL A 296 N LEU A 293 LINK SG CYS A 344 FE HEM A 401 1555 1555 2.49 CISPEP 1 PHE A 10 PRO A 11 0 5.92 CISPEP 2 PRO A 129 PRO A 130 0 -3.46 CRYST1 98.076 98.076 94.280 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010196 0.005887 0.000000 0.00000 SCALE2 0.000000 0.011774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010607 0.00000