HEADER IMMUNOSUPPRESSANT 16-AUG-23 8Q7J TITLE CONFORMATIONS OF MACROCYCLIC PEPTIDES SAMPLED BY EXACT NOES: MODELS TITLE 2 FOR CELL-PERMEABILITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLOSPORIN A; COMPND 3 CHAIN: Z; COMPND 4 OTHER_DETAILS: IMMUNOSUPPRESSANT CYCLIC PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOLYPOCLADIUM INFLATUM; SOURCE 3 ORGANISM_TAXID: 29910 KEYWDS CYCLIC PEPTIDE IMMUNOSUPPRESSANT NMR EXACT NOES CELL-PERMEABILITY, KEYWDS 2 IMMUNOSUPPRESSANT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.H.RUEDISSER,E.MATABARO,L.SONDEREGGER,P.GUENTERT,M.KUENZLER, AUTHOR 2 A.D.GOSSERT REVDAT 3 03-JAN-24 8Q7J 1 JRNL REVDAT 2 20-DEC-23 8Q7J 1 JRNL REVDAT 1 06-DEC-23 8Q7J 0 JRNL AUTH S.H.RUDISSER,E.MATABARO,L.SONDEREGGER,P.GUNTERT,M.KUNZLER, JRNL AUTH 2 A.D.GOSSERT JRNL TITL CONFORMATIONS OF MACROCYCLIC PEPTIDES SAMPLED BY NUCLEAR JRNL TITL 2 MAGNETIC RESONANCE: MODELS FOR CELL-PERMEABILITY. JRNL REF J.AM.CHEM.SOC. V. 145 27601 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 38062770 JRNL DOI 10.1021/JACS.3C09367 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 22 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Q7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132726. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 274 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 23 MM CYCLOSPORIN A, CDCL3/N REMARK 210 -HEXADECANE-D34 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-13C HSQC; 2D 1H-13C HMBC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.5, CYANA REMARK 210 3.98.15, NMRPIPE 10.9 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA Z 7 24.75 -76.28 REMARK 500 2 MLE Z 4 34.51 -98.74 REMARK 500 2 ALA Z 7 29.59 -76.43 REMARK 500 3 MLE Z 4 35.60 -97.34 REMARK 500 3 ALA Z 7 25.46 -75.53 REMARK 500 4 ALA Z 7 22.36 -74.46 REMARK 500 5 MLE Z 4 36.12 -99.79 REMARK 500 5 ALA Z 7 28.29 -77.52 REMARK 500 6 ALA Z 7 23.16 -74.01 REMARK 500 7 MLE Z 4 38.41 -99.58 REMARK 500 7 ALA Z 7 29.05 -75.86 REMARK 500 8 MLE Z 4 37.71 -99.40 REMARK 500 8 ALA Z 7 23.67 -75.10 REMARK 500 9 MLE Z 4 37.27 -97.91 REMARK 500 9 ALA Z 7 25.61 -75.28 REMARK 500 10 MLE Z 4 36.93 -98.95 REMARK 500 10 ALA Z 7 28.78 -76.38 REMARK 500 11 ALA Z 7 28.35 -76.21 REMARK 500 12 MLE Z 4 37.70 -99.61 REMARK 500 12 ALA Z 7 24.45 -74.51 REMARK 500 13 ALA Z 7 23.11 -74.46 REMARK 500 14 ALA Z 7 26.24 -76.18 REMARK 500 15 ALA Z 7 26.88 -75.74 REMARK 500 16 ALA Z 7 28.75 -76.35 REMARK 500 17 MLE Z 4 38.91 -99.95 REMARK 500 17 ALA Z 7 27.40 -75.78 REMARK 500 18 ALA Z 7 26.18 -75.17 REMARK 500 19 ALA Z 7 27.98 -77.81 REMARK 500 20 ALA Z 7 22.90 -75.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34846 RELATED DB: BMRB REMARK 900 CONFORMATIONS OF MACROCYCLIC PEPTIDES SAMPLED BY EXACT NOES: MODELS REMARK 900 FOR CELL-PERMEABILITY DBREF 8Q7J Z 1 11 PDB 8Q7J 8Q7J 1 11 SEQRES 1 Z 11 BMT ABA SAR MLE VAL MLE ALA DAL MLE MLE MVA HET BMT Z 1 30 HET ABA Z 2 13 HET SAR Z 3 10 HET MLE Z 4 22 HET MLE Z 6 22 HET DAL Z 8 10 HET MLE Z 9 22 HET MLE Z 10 22 HET MVA Z 11 19 HETNAM BMT 4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM SAR SARCOSINE HETNAM MLE N-METHYLLEUCINE HETNAM DAL D-ALANINE HETNAM MVA N-METHYLVALINE FORMUL 1 BMT C10 H19 N O3 FORMUL 1 ABA C4 H9 N O2 FORMUL 1 SAR C3 H7 N O2 FORMUL 1 MLE 4(C7 H15 N O2) FORMUL 1 DAL C3 H7 N O2 FORMUL 1 MVA C6 H13 N O2 LINK C BMT Z 1 N ABA Z 2 1555 1555 1.33 LINK N BMT Z 1 C MVA Z 11 1555 1555 1.39 LINK C ABA Z 2 N SAR Z 3 1555 1555 1.40 LINK C SAR Z 3 N MLE Z 4 1555 1555 1.40 LINK C MLE Z 4 N VAL Z 5 1555 1555 1.35 LINK C VAL Z 5 N MLE Z 6 1555 1555 1.39 LINK C MLE Z 6 N ALA Z 7 1555 1555 1.34 LINK C ALA Z 7 N DAL Z 8 1555 1555 1.33 LINK C DAL Z 8 N MLE Z 9 1555 1555 1.39 LINK C MLE Z 9 N MLE Z 10 1555 1555 1.39 LINK C MLE Z 10 N MVA Z 11 1555 1555 1.39 CISPEP 1 MLE Z 9 MLE Z 10 1 6.36 CISPEP 2 MLE Z 9 MLE Z 10 2 -0.91 CISPEP 3 MLE Z 9 MLE Z 10 3 -1.06 CISPEP 4 MLE Z 9 MLE Z 10 4 0.19 CISPEP 5 MLE Z 9 MLE Z 10 5 0.70 CISPEP 6 MLE Z 9 MLE Z 10 6 0.60 CISPEP 7 MLE Z 9 MLE Z 10 7 -1.22 CISPEP 8 MLE Z 9 MLE Z 10 8 -0.30 CISPEP 9 MLE Z 9 MLE Z 10 9 -1.45 CISPEP 10 MLE Z 9 MLE Z 10 10 -1.64 CISPEP 11 MLE Z 9 MLE Z 10 11 -1.57 CISPEP 12 MLE Z 9 MLE Z 10 12 -1.67 CISPEP 13 MLE Z 9 MLE Z 10 13 0.32 CISPEP 14 MLE Z 9 MLE Z 10 14 -0.76 CISPEP 15 MLE Z 9 MLE Z 10 15 -0.86 CISPEP 16 MLE Z 9 MLE Z 10 16 -1.12 CISPEP 17 MLE Z 9 MLE Z 10 17 -1.93 CISPEP 18 MLE Z 9 MLE Z 10 18 0.26 CISPEP 19 MLE Z 9 MLE Z 10 19 -2.58 CISPEP 20 MLE Z 9 MLE Z 10 20 -0.55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 N BMT Z 1 1.514 -0.465 -0.446 1.00 0.00 N HETATM 2 CN BMT Z 1 2.454 -0.970 0.589 1.00 0.00 C HETATM 3 CA BMT Z 1 1.839 -0.866 -1.868 1.00 0.00 C HETATM 4 C BMT Z 1 1.239 -2.152 -2.479 1.00 0.00 C HETATM 5 O BMT Z 1 1.206 -3.215 -1.857 1.00 0.00 O HETATM 6 CB BMT Z 1 3.301 -0.736 -2.368 1.00 0.00 C HETATM 7 OG1 BMT Z 1 4.282 -1.490 -1.658 1.00 0.00 O HETATM 8 CG2 BMT Z 1 3.705 0.740 -2.565 1.00 0.00 C HETATM 9 CD1 BMT Z 1 4.868 0.858 -3.549 1.00 0.00 C HETATM 10 CD2 BMT Z 1 3.907 1.579 -1.307 1.00 0.00 C HETATM 11 CE BMT Z 1 5.171 1.274 -0.524 1.00 0.00 C HETATM 12 CZ BMT Z 1 6.184 2.170 -0.478 1.00 0.00 C HETATM 13 CH BMT Z 1 7.447 1.868 0.301 1.00 0.00 C HETATM 14 HN1 BMT Z 1 1.947 -1.105 1.545 1.00 0.00 H HETATM 15 HN2 BMT Z 1 2.865 -1.937 0.301 1.00 0.00 H HETATM 16 HN3 BMT Z 1 3.267 -0.251 0.697 1.00 0.00 H HETATM 17 HA BMT Z 1 1.393 -0.077 -2.473 1.00 0.00 H HETATM 18 HB BMT Z 1 3.285 -1.134 -3.382 1.00 0.00 H HETATM 19 HG1 BMT Z 1 5.090 -1.512 -2.174 1.00 0.00 H HETATM 20 HG2 BMT Z 1 2.879 1.224 -3.087 1.00 0.00 H HETATM 21 HD11 BMT Z 1 5.132 1.906 -3.679 1.00 0.00 H HETATM 22 HD12 BMT Z 1 5.735 0.301 -3.194 1.00 0.00 H HETATM 23 HD13 BMT Z 1 4.527 0.467 -4.507 1.00 0.00 H HETATM 24 HD22 BMT Z 1 3.022 1.516 -0.672 1.00 0.00 H HETATM 25 HD23 BMT Z 1 3.922 2.616 -1.641 1.00 0.00 H HETATM 26 HE BMT Z 1 5.266 0.331 -0.004 1.00 0.00 H HETATM 27 HZ BMT Z 1 6.097 3.113 -0.998 1.00 0.00 H HETATM 28 HH1 BMT Z 1 7.394 0.877 0.754 1.00 0.00 H HETATM 29 HH2 BMT Z 1 8.305 1.919 -0.369 1.00 0.00 H HETATM 30 HH3 BMT Z 1 7.576 2.614 1.085 1.00 0.00 H HETATM 31 N ABA Z 2 0.757 -2.061 -3.720 1.00 0.00 N HETATM 32 CA ABA Z 2 0.330 -3.170 -4.548 1.00 0.00 C HETATM 33 C ABA Z 2 1.463 -3.421 -5.577 1.00 0.00 C HETATM 34 O ABA Z 2 1.520 -2.737 -6.602 1.00 0.00 O HETATM 35 CB ABA Z 2 -1.030 -2.771 -5.171 1.00 0.00 C HETATM 36 CG ABA Z 2 -1.591 -3.891 -6.044 1.00 0.00 C HETATM 37 H ABA Z 2 0.697 -1.150 -4.154 1.00 0.00 H HETATM 38 HA ABA Z 2 0.222 -4.076 -3.952 1.00 0.00 H HETATM 39 HB3 ABA Z 2 -0.892 -1.886 -5.794 1.00 0.00 H HETATM 40 HB2 ABA Z 2 -1.768 -2.503 -4.415 1.00 0.00 H HETATM 41 HG1 ABA Z 2 -2.558 -3.600 -6.453 1.00 0.00 H HETATM 42 HG3 ABA Z 2 -0.891 -4.080 -6.858 1.00 0.00 H HETATM 43 HG2 ABA Z 2 -1.707 -4.801 -5.454 1.00 0.00 H HETATM 44 N SAR Z 3 2.445 -4.400 -5.399 1.00 0.00 N HETATM 45 CA SAR Z 3 3.675 -4.364 -6.250 1.00 0.00 C HETATM 46 C SAR Z 3 4.427 -3.016 -6.310 1.00 0.00 C HETATM 47 O SAR Z 3 4.913 -2.576 -5.266 1.00 0.00 O HETATM 48 CN SAR Z 3 2.632 -5.200 -4.164 1.00 0.00 C HETATM 49 HA2 SAR Z 3 3.380 -4.646 -7.260 1.00 0.00 H HETATM 50 HA3 SAR Z 3 4.397 -5.115 -5.932 1.00 0.00 H HETATM 51 HN1 SAR Z 3 3.262 -6.069 -4.355 1.00 0.00 H HETATM 52 HN2 SAR Z 3 1.673 -5.568 -3.799 1.00 0.00 H HETATM 53 HN3 SAR Z 3 3.097 -4.582 -3.396 1.00 0.00 H HETATM 54 N MLE Z 4 4.575 -2.276 -7.484 1.00 0.00 N HETATM 55 CN MLE Z 4 3.979 -2.662 -8.792 1.00 0.00 C HETATM 56 CA MLE Z 4 4.961 -0.825 -7.447 1.00 0.00 C HETATM 57 CB MLE Z 4 6.230 -0.545 -8.311 1.00 0.00 C HETATM 58 CG MLE Z 4 7.457 -1.413 -7.953 1.00 0.00 C HETATM 59 CD1 MLE Z 4 8.582 -1.149 -8.967 1.00 0.00 C HETATM 60 CD2 MLE Z 4 8.002 -1.145 -6.538 1.00 0.00 C HETATM 61 C MLE Z 4 3.842 0.245 -7.619 1.00 0.00 C HETATM 62 O MLE Z 4 4.056 1.271 -8.272 1.00 0.00 O HETATM 63 HN1 MLE Z 4 4.160 -3.717 -8.998 1.00 0.00 H HETATM 64 HN2 MLE Z 4 4.401 -2.091 -9.619 1.00 0.00 H HETATM 65 HN3 MLE Z 4 2.905 -2.475 -8.772 1.00 0.00 H HETATM 66 HA MLE Z 4 5.289 -0.610 -6.430 1.00 0.00 H HETATM 67 HB2 MLE Z 4 6.508 0.503 -8.183 1.00 0.00 H HETATM 68 HB3 MLE Z 4 6.027 -0.677 -9.374 1.00 0.00 H HETATM 69 HG MLE Z 4 7.190 -2.467 -8.026 1.00 0.00 H HETATM 70 HD11 MLE Z 4 8.237 -1.352 -9.981 1.00 0.00 H HETATM 71 HD12 MLE Z 4 9.427 -1.805 -8.754 1.00 0.00 H HETATM 72 HD13 MLE Z 4 8.909 -0.111 -8.905 1.00 0.00 H HETATM 73 HD21 MLE Z 4 7.263 -1.443 -5.795 1.00 0.00 H HETATM 74 HD22 MLE Z 4 8.229 -0.084 -6.425 1.00 0.00 H HETATM 75 HD23 MLE Z 4 8.903 -1.735 -6.373 1.00 0.00 H