HEADER VIRAL PROTEIN 19-AUG-23 8Q93 TITLE CRYSTAL STRUCTURE OF THE SARS-COV-2 RBD WITH NEUTRALIZING-VHHS RE30H02 TITLE 2 AND RE21D01 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NANOBODY RE21D01; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: NANOBODY RE30H02; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: S, 2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 10 ORGANISM_TAXID: 30538; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 15 ORGANISM_TAXID: 30538; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NEUTRALIZING VHH, FOLD-PROMOTER, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.AKSU,T.GUTTLER,O.RYMARENKO,D.GORLICH REVDAT 2 27-DEC-23 8Q93 1 JRNL REVDAT 1 20-DEC-23 8Q93 0 JRNL AUTH M.AKSU,P.KUMAR,T.GUTTLER,W.TAXER,K.GREGOR,B.MUSSIL, JRNL AUTH 2 O.RYMARENKO,K.M.STEGMANN,A.DICKMANNS,S.GERBER,W.REINEKING, JRNL AUTH 3 C.SCHULZ,T.HENNECK,A.MOHAMED,G.POHLMANN,M.RAMAZANOGLU, JRNL AUTH 4 K.MESE,U.GROSS,T.BEN-YEDIDIA,O.OVADIA,D.W.FISCHER, JRNL AUTH 5 M.KAMENSKY,A.REICHMAN,W.BAUMGARTNER, JRNL AUTH 6 M.VON KOCKRITZ-BLICKWEDE,M.DOBBELSTEIN,D.GORLICH JRNL TITL NANOBODIES TO MULTIPLE SPIKE VARIANTS AND INHALATION OF JRNL TITL 2 NANOBODY-CONTAINING AEROSOLS NEUTRALIZE SARS-COV-2 IN CELL JRNL TITL 3 CULTURE AND HAMSTERS. JRNL REF ANTIVIRAL RES. V. 221 05778 2023 JRNL REFN ISSN 0166-3542 JRNL PMID 38065245 JRNL DOI 10.1016/J.ANTIVIRAL.2023.105778 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9200 - 4.9300 1.00 3075 163 0.1974 0.2509 REMARK 3 2 4.9200 - 3.9100 1.00 2888 152 0.1871 0.2318 REMARK 3 3 3.9100 - 3.4100 1.00 2846 149 0.2099 0.2737 REMARK 3 4 3.4100 - 3.1000 1.00 2820 149 0.2334 0.3244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3455 REMARK 3 ANGLE : 0.771 4702 REMARK 3 CHIRALITY : 0.050 503 REMARK 3 PLANARITY : 0.005 614 REMARK 3 DIHEDRAL : 15.422 1209 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 333 THROUGH 526) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9428 -57.0222 -39.5108 REMARK 3 T TENSOR REMARK 3 T11: 0.5260 T22: 0.4627 REMARK 3 T33: 0.5648 T12: 0.0107 REMARK 3 T13: -0.0557 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 3.8594 L22: 0.5405 REMARK 3 L33: 2.8586 L12: 0.0552 REMARK 3 L13: -2.1795 L23: 0.2650 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: -0.3277 S13: 0.0247 REMARK 3 S21: 0.0199 S22: 0.1107 S23: -0.0348 REMARK 3 S31: 0.1517 S32: 0.0411 S33: -0.0515 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 114) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1490 -80.2303 -48.4063 REMARK 3 T TENSOR REMARK 3 T11: 0.6211 T22: 0.6271 REMARK 3 T33: 0.5793 T12: -0.1087 REMARK 3 T13: -0.0284 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.8651 L22: 4.4047 REMARK 3 L33: 2.4108 L12: 1.4016 REMARK 3 L13: 0.7541 L23: -0.1984 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: 0.2060 S13: -0.2964 REMARK 3 S21: -0.5610 S22: 0.1440 S23: 0.3995 REMARK 3 S31: 0.4206 S32: -0.3757 S33: -0.0917 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 130) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8184 -55.0385 -28.2497 REMARK 3 T TENSOR REMARK 3 T11: 0.5869 T22: 0.7264 REMARK 3 T33: 0.5378 T12: -0.0088 REMARK 3 T13: 0.0197 T23: 0.1087 REMARK 3 L TENSOR REMARK 3 L11: 6.7845 L22: 2.0734 REMARK 3 L33: 3.0443 L12: 0.0738 REMARK 3 L13: -0.3681 L23: 0.4303 REMARK 3 S TENSOR REMARK 3 S11: -0.2566 S12: -0.7703 S13: -0.5921 REMARK 3 S21: 0.1342 S22: 0.2113 S23: -0.0140 REMARK 3 S31: 0.1140 S32: -0.0224 S33: 0.0477 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Q93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292127691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12249 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 49.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 76.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.37500 REMARK 200 FOR THE DATA SET : 20.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 3.78700 REMARK 200 FOR SHELL : 2.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG SMEAR BROAD, 50 MM ARGININE, REMARK 280 50 MM MSG, 5% GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 331 REMARK 465 GLY A 332 REMARK 465 GLU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY C 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 333 OG REMARK 470 VAL A 362 CG1 CG2 REMARK 470 GLN B 1 CG CD OE1 NE2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 SER B 30 OG REMARK 470 SER B 114 OG REMARK 470 GLU C 1 CG CD OE1 OE2 REMARK 470 GLU C 130 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 352 53.89 -117.06 REMARK 500 ILE A 402 -156.80 -138.22 REMARK 500 ASN A 422 -56.87 -131.61 REMARK 500 CYS A 525 -95.41 -139.38 REMARK 500 VAL C 12 -166.75 -126.18 REMARK 500 SER C 25 79.71 -157.42 REMARK 500 ASP C 55 -24.40 65.78 REMARK 500 CYS C 112 76.22 -110.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 8Q93 A 334 526 UNP P0DTC2 SPIKE_SARS2 334 526 DBREF 8Q93 B -2 114 PDB 8Q93 8Q93 -2 114 DBREF 8Q93 C 0 130 PDB 8Q93 8Q93 0 130 SEQADV 8Q93 GLU A 331 UNP P0DTC2 EXPRESSION TAG SEQADV 8Q93 GLY A 332 UNP P0DTC2 EXPRESSION TAG SEQADV 8Q93 SER A 333 UNP P0DTC2 EXPRESSION TAG SEQADV 8Q93 ASP A 343 UNP P0DTC2 ASN 343 CONFLICT SEQRES 1 A 196 GLU GLY SER ASN LEU CYS PRO PHE GLY GLU VAL PHE ASP SEQRES 2 A 196 ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS SEQRES 3 A 196 ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR SEQRES 4 A 196 ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SEQRES 5 A 196 SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL SEQRES 6 A 196 TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG SEQRES 7 A 196 GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR SEQRES 8 A 196 ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE SEQRES 9 A 196 ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY SEQRES 10 A 196 ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN SEQRES 11 A 196 LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR SEQRES 12 A 196 GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE SEQRES 13 A 196 ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO SEQRES 14 A 196 THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL SEQRES 15 A 196 LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS SEQRES 16 A 196 GLY SEQRES 1 B 117 GLU GLY SER GLN VAL GLN LEU VAL GLU SER GLY GLY ALA SEQRES 2 B 117 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS VAL SEQRES 3 B 117 ALA SER GLY PHE THR PHE SER SER PHE ALA MET GLY TRP SEQRES 4 B 117 TYR ARG GLN ALA PRO GLY LYS GLU CYS GLU TRP VAL ALA SEQRES 5 B 117 THR ILE THR ILE THR GLY GLY SER THR ASN TYR ALA ASP SEQRES 6 B 117 SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA SEQRES 7 B 117 LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO SEQRES 8 B 117 GLU ASP THR ALA VAL TYR TYR CYS ASN PRO ASP PRO GLY SEQRES 9 B 117 CYS ARG ARG GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 1 C 131 GLY GLU VAL GLN LEU VAL GLU SER GLY GLY ASP SER VAL SEQRES 2 C 131 GLN PRO GLY ASP SER LEU ARG LEU SER CYS ALA ILE SER SEQRES 3 C 131 GLY PHE THR LEU ASP TYR TYR THR ILE GLY TRP PHE ARG SEQRES 4 C 131 GLN ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SEQRES 5 C 131 GLY SER SER ASP SER SER THR SER TYR ALA ASP ALA VAL SEQRES 6 C 131 LYS GLY ARG PHE THR ILE SER SER ASP ASN ALA LYS ASN SEQRES 7 C 131 THR VAL TYR LEU GLN MET ASN ASN LEU LYS PRO GLU ASP SEQRES 8 C 131 THR ALA VAL TYR TYR CYS ALA ALA GLY PRO ALA THR TYR SEQRES 9 C 131 TYR GLY GLY ASN TRP HIS HIS THR CYS HIS ALA ASN ALA SEQRES 10 C 131 MET HIS TYR TRP GLY LYS GLY THR LEU VAL THR VAL SER SEQRES 11 C 131 GLU HELIX 1 AA1 PRO A 337 ASP A 343 1 7 HELIX 2 AA2 SER A 349 TRP A 353 5 5 HELIX 3 AA3 TYR A 365 ASN A 370 1 6 HELIX 4 AA4 SER A 383 LEU A 390 5 8 HELIX 5 AA5 ASP A 405 ILE A 410 5 6 HELIX 6 AA6 GLY A 416 ASN A 422 1 7 HELIX 7 AA7 SER A 438 SER A 443 1 6 HELIX 8 AA8 GLY A 502 TYR A 505 5 4 HELIX 9 AA9 THR B 28 SER B 30 5 3 HELIX 10 AB1 ASN B 74 LYS B 76 5 3 HELIX 11 AB2 LYS B 87 THR B 91 5 5 HELIX 12 AB3 ASP C 62 LYS C 65 5 4 HELIX 13 AB4 LYS C 87 THR C 91 5 5 HELIX 14 AB5 HIS C 113 MET C 117 5 5 SHEET 1 AA1 9 ASN A 354 ARG A 357 0 SHEET 2 AA1 9 PHE A 392 ARG A 403 -1 O ALA A 397 N LYS A 356 SHEET 3 AA1 9 PRO A 507 LEU A 517 -1 O GLU A 516 N THR A 393 SHEET 4 AA1 9 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 9 THR A 376 TYR A 380 -1 N THR A 376 O ALA A 435 SHEET 6 AA1 9 PHE B 32 GLN B 39 -1 O ALA B 33 N PHE A 377 SHEET 7 AA1 9 ALA B 92 ASN B 97 -1 O VAL B 93 N GLN B 39 SHEET 8 AA1 9 THR B 108 VAL B 112 -1 O THR B 108 N TYR B 94 SHEET 9 AA1 9 LEU B 11 VAL B 12 1 N VAL B 12 O THR B 111 SHEET 1 AA2 8 ASN A 354 ARG A 357 0 SHEET 2 AA2 8 PHE A 392 ARG A 403 -1 O ALA A 397 N LYS A 356 SHEET 3 AA2 8 PRO A 507 LEU A 517 -1 O GLU A 516 N THR A 393 SHEET 4 AA2 8 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA2 8 THR A 376 TYR A 380 -1 N THR A 376 O ALA A 435 SHEET 6 AA2 8 PHE B 32 GLN B 39 -1 O ALA B 33 N PHE A 377 SHEET 7 AA2 8 GLU B 46 ILE B 51 -1 O ALA B 49 N TRP B 36 SHEET 8 AA2 8 THR B 58 TYR B 60 -1 O ASN B 59 N THR B 50 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA5 4 GLN B 3 SER B 7 0 SHEET 2 AA5 4 LEU B 18 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 AA5 4 THR B 78 MET B 83 -1 O LEU B 81 N LEU B 20 SHEET 4 AA5 4 PHE B 68 ASP B 73 -1 N ASP B 73 O THR B 78 SHEET 1 AA6 4 GLN C 3 SER C 7 0 SHEET 2 AA6 4 LEU C 18 SER C 25 -1 O SER C 21 N SER C 7 SHEET 3 AA6 4 THR C 78 MET C 83 -1 O MET C 83 N LEU C 18 SHEET 4 AA6 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLN C 82 SHEET 1 AA7 6 SER C 11 VAL C 12 0 SHEET 2 AA7 6 THR C 124 VAL C 128 1 O THR C 127 N VAL C 12 SHEET 3 AA7 6 ALA C 92 PRO C 100 -1 N TYR C 94 O THR C 124 SHEET 4 AA7 6 TYR C 32 GLN C 39 -1 N GLY C 35 O ALA C 97 SHEET 5 AA7 6 ARG C 45 GLY C 52 -1 O GLU C 46 N ARG C 38 SHEET 6 AA7 6 THR C 58 TYR C 60 -1 O SER C 59 N CYS C 50 SHEET 1 AA8 4 SER C 11 VAL C 12 0 SHEET 2 AA8 4 THR C 124 VAL C 128 1 O THR C 127 N VAL C 12 SHEET 3 AA8 4 ALA C 92 PRO C 100 -1 N TYR C 94 O THR C 124 SHEET 4 AA8 4 TYR C 119 TRP C 120 -1 O TYR C 119 N ALA C 98 SHEET 1 AA9 2 THR C 102 TYR C 104 0 SHEET 2 AA9 2 ASN C 107 HIS C 109 -1 O HIS C 109 N THR C 102 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.04 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.05 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.04 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.04 SSBOND 5 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 6 CYS B 45 CYS B 102 1555 1555 2.05 SSBOND 7 CYS C 22 CYS C 96 1555 1555 2.04 SSBOND 8 CYS C 50 CYS C 112 1555 1555 2.04 CRYST1 155.615 155.615 155.615 90.00 90.00 90.00 P 4 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006426 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006426 0.00000