data_8Q96 # _entry.id 8Q96 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8Q96 pdb_00008q96 10.2210/pdb8q96/pdb WWPDB D_1292132862 ? ? EMDB EMD-18269 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'P301S Tau Filaments from the Brains of Tg2541 Transgenic Mouse Line' _pdbx_database_related.db_id EMD-18269 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8Q96 _pdbx_database_status.recvd_initial_deposition_date 2023-08-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Schweighauser, M.' 1 ? 'Murzin, A.G.' 2 ? 'Macdonald, J.' 3 ? 'Lavenir, I.' 4 ? 'Crowther, R.A.' 5 ? 'Scheres, S.H.W.' 6 ? 'Goedert, M.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Neuropathol Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2051-5960 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 160 _citation.page_last 160 _citation.title 'Cryo-EM structures of tau filaments from the brains of mice transgenic for human mutant P301S Tau.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1186/s40478-023-01658-y _citation.pdbx_database_id_PubMed 37798679 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schweighauser, M.' 1 ? primary 'Murzin, A.G.' 2 ? primary 'Macdonald, J.' 3 ? primary 'Lavenir, I.' 4 ? primary 'Crowther, R.A.' 5 ? primary 'Scheres, S.H.W.' 6 ? primary 'Goedert, M.' 7 0000-0002-5214-7886 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8Q96 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8Q96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Isoform Tau-E of Microtubule-associated protein tau' 5961.934 4 ? ? ? ? 2 polymer nat 'Unknown protein' 1039.273 4 ? ? ? ? 3 polymer nat 'Unknown protein' 869.063 4 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no KVQIINKKLDLSNVQSKCGSKDNIKHVSGGGSVQIVYKPVDLSKVTSKCGSLGNIH KVQIINKKLDLSNVQSKCGSKDNIKHVSGGGSVQIVYKPVDLSKVTSKCGSLGNIH A,D,G,J ? 2 'polypeptide(L)' no no '(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)' XXXXXXXXXXXX B,E,H,K ? 3 'polypeptide(L)' no no '(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)' XXXXXXXXXX C,F,I,L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 GLN n 1 4 ILE n 1 5 ILE n 1 6 ASN n 1 7 LYS n 1 8 LYS n 1 9 LEU n 1 10 ASP n 1 11 LEU n 1 12 SER n 1 13 ASN n 1 14 VAL n 1 15 GLN n 1 16 SER n 1 17 LYS n 1 18 CYS n 1 19 GLY n 1 20 SER n 1 21 LYS n 1 22 ASP n 1 23 ASN n 1 24 ILE n 1 25 LYS n 1 26 HIS n 1 27 VAL n 1 28 SER n 1 29 GLY n 1 30 GLY n 1 31 GLY n 1 32 SER n 1 33 VAL n 1 34 GLN n 1 35 ILE n 1 36 VAL n 1 37 TYR n 1 38 LYS n 1 39 PRO n 1 40 VAL n 1 41 ASP n 1 42 LEU n 1 43 SER n 1 44 LYS n 1 45 VAL n 1 46 THR n 1 47 SER n 1 48 LYS n 1 49 CYS n 1 50 GLY n 1 51 SER n 1 52 LEU n 1 53 GLY n 1 54 ASN n 1 55 ILE n 1 56 HIS n 2 1 UNK n 2 2 UNK n 2 3 UNK n 2 4 UNK n 2 5 UNK n 2 6 UNK n 2 7 UNK n 2 8 UNK n 2 9 UNK n 2 10 UNK n 2 11 UNK n 2 12 UNK n 3 1 UNK n 3 2 UNK n 3 3 UNK n 3 4 UNK n 3 5 UNK n 3 6 UNK n 3 7 UNK n 3 8 UNK n 3 9 UNK n 3 10 UNK n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 56 'house mouse' 'Mus musculus' 10090 ? ? Tg2541 Brainstem ? ? ? ? ? ? ? Brain ? ? ? ? ? 2 1 sample 1 12 ? 'Mus musculus' 10090 ? ? Tg2541 Brainstem ? ? ? ? ? ? ? Brain ? ? ? ? ? 3 1 sample 1 10 ? 'Mus musculus' 10090 ? ? Tg2541 Brainstem ? ? ? ? ? ? ? Brain ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP TAU_MOUSE P10637 P10637-6 1 KVQIINKKLDLSNVQSKCGSKDNIKHVPGGGSVQIVYKPVDLSKVTSKCGSLGNIH 183 2 PDB 8Q96 8Q96 ? 2 ? 1 3 PDB 8Q96 8Q96 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8Q96 A 1 ? 56 ? P10637 183 ? 238 ? 274 329 2 2 8Q96 B 1 ? 12 ? 8Q96 1 ? 12 ? 1 12 3 3 8Q96 C 1 ? 10 ? 8Q96 1 ? 10 ? 1 10 4 1 8Q96 D 1 ? 56 ? P10637 183 ? 238 ? 274 329 5 2 8Q96 E 1 ? 12 ? 8Q96 1 ? 12 ? 1 12 6 3 8Q96 F 1 ? 10 ? 8Q96 1 ? 10 ? 1 10 7 1 8Q96 G 1 ? 56 ? P10637 183 ? 238 ? 274 329 8 2 8Q96 H 1 ? 12 ? 8Q96 1 ? 12 ? 1 12 9 3 8Q96 I 1 ? 10 ? 8Q96 1 ? 10 ? 1 10 10 1 8Q96 J 1 ? 56 ? P10637 183 ? 238 ? 274 329 11 2 8Q96 K 1 ? 12 ? 8Q96 1 ? 12 ? 1 12 12 3 8Q96 L 1 ? 10 ? 8Q96 1 ? 10 ? 1 10 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8Q96 SER A 28 ? UNP P10637 PRO 210 conflict 301 1 4 8Q96 SER D 28 ? UNP P10637 PRO 210 conflict 301 2 7 8Q96 SER G 28 ? UNP P10637 PRO 210 conflict 301 3 10 8Q96 SER J 28 ? UNP P10637 PRO 210 conflict 301 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNK 'L-peptide linking' . UNKNOWN ? 'C4 H9 N O2' 103.120 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8Q96 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 44.677 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.873 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8Q96 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.09 _refine.ls_d_res_low 94.30 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 28827 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.37736 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.37736 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'PARAMETERS FOR MASK CACLULATION' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.163 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B 15.854 _refine.overall_SU_ML 0.269 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high . _refine_hist.d_res_low . _refine_hist.number_atoms_solvent ? _refine_hist.number_atoms_total 525 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein ? _refine_hist.pdbx_number_atoms_nucleic_acid ? _refine_hist.pdbx_number_atoms_ligand ? _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 0.011 526 ? r_bond_refined_d ? ? 'ELECTRON MICROSCOPY' ? 0.001 0.016 502 ? r_bond_other_d ? ? 'ELECTRON MICROSCOPY' ? 1.143 1.610 706 ? r_angle_refined_deg ? ? 'ELECTRON MICROSCOPY' ? 0.520 1.600 1144 ? r_angle_other_deg ? ? 'ELECTRON MICROSCOPY' ? 7.256 5.000 75 ? r_dihedral_angle_1_deg ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'ELECTRON MICROSCOPY' ? 12.593 10.000 88 ? r_dihedral_angle_3_deg ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'ELECTRON MICROSCOPY' ? 0.049 0.200 89 ? r_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 0.020 600 ? r_gen_planes_refined ? ? 'ELECTRON MICROSCOPY' ? 0.002 0.020 96 ? r_gen_planes_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? 5.189 4.330 309 ? r_mcbond_it ? ? 'ELECTRON MICROSCOPY' ? 5.182 4.325 309 ? r_mcbond_other ? ? 'ELECTRON MICROSCOPY' ? 8.490 7.698 381 ? r_mcangle_it ? ? 'ELECTRON MICROSCOPY' ? 8.514 7.710 382 ? r_mcangle_other ? ? 'ELECTRON MICROSCOPY' ? 7.701 5.330 217 ? r_scbond_it ? ? 'ELECTRON MICROSCOPY' ? 7.684 5.337 218 ? r_scbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_scangle_it ? ? 'ELECTRON MICROSCOPY' ? 12.776 9.170 326 ? r_scangle_other ? ? 'ELECTRON MICROSCOPY' ? 16.260 39.08 477 ? r_long_range_B_refined ? ? 'ELECTRON MICROSCOPY' ? 16.291 39.13 478 ? r_long_range_B_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_rigid_bond_restr ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_free ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_ls_shell.d_res_high 3.090 _refine_ls_shell.d_res_low 3.170 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_R_work 2153 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.984 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.000 # _struct.entry_id 8Q96 _struct.title 'P301S Tau Filaments from the Brains of Tg2541 Transgenic Mouse Line' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8Q96 _struct_keywords.text ;P301S tau, Frontotemporal dementia and parkinsonism linked to chromosome 17, Transgenic mice, Electron cryo-microscopy, PROTEIN FIBRIL ; _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 1 ? H N N 2 ? I N N 3 ? J N N 1 ? K N N 2 ? L N N 3 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? AA7 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL D 2 ? ASP D 10 ? VAL D 275 ASP D 283 AA1 2 VAL J 2 ? ASP J 10 ? VAL J 275 ASP J 283 AA1 3 VAL A 2 ? ASP A 10 ? VAL A 275 ASP A 283 AA1 4 VAL G 2 ? ASP G 10 ? VAL G 275 ASP G 283 AA2 1 ASN D 13 ? VAL D 14 ? ASN D 286 VAL D 287 AA2 2 ASN J 13 ? VAL J 14 ? ASN J 286 VAL J 287 AA2 3 ASN A 13 ? VAL A 14 ? ASN A 286 VAL A 287 AA2 4 ASN G 13 ? VAL G 14 ? ASN G 286 VAL G 287 AA3 1 GLY D 19 ? GLY D 29 ? GLY D 292 GLY D 302 AA3 2 GLY J 19 ? GLY J 29 ? GLY J 292 GLY J 302 AA3 3 GLY A 19 ? GLY A 29 ? GLY A 292 GLY A 302 AA3 4 GLY G 19 ? GLY G 29 ? GLY G 292 GLY G 302 AA4 1 VAL D 33 ? TYR D 37 ? VAL D 306 TYR D 310 AA4 2 VAL J 33 ? TYR J 37 ? VAL J 306 TYR J 310 AA4 3 VAL A 33 ? TYR A 37 ? VAL A 306 TYR A 310 AA4 4 VAL G 33 ? TYR G 37 ? VAL G 306 TYR G 310 AA5 1 VAL D 40 ? ASP D 41 ? VAL D 313 ASP D 314 AA5 2 VAL J 40 ? ASP J 41 ? VAL J 313 ASP J 314 AA5 3 VAL A 40 ? ASP A 41 ? VAL A 313 ASP A 314 AA5 4 VAL G 40 ? ASP G 41 ? VAL G 313 ASP G 314 AA6 1 LYS D 44 ? VAL D 45 ? LYS D 317 VAL D 318 AA6 2 LYS J 44 ? VAL J 45 ? LYS J 317 VAL J 318 AA6 3 LYS A 44 ? VAL A 45 ? LYS A 317 VAL A 318 AA6 4 LYS G 44 ? VAL G 45 ? LYS G 317 VAL G 318 AA7 1 GLY D 50 ? ASN D 54 ? GLY D 323 ASN D 327 AA7 2 GLY J 50 ? ASN J 54 ? GLY J 323 ASN J 327 AA7 3 GLY A 50 ? ASN A 54 ? GLY A 323 ASN A 327 AA7 4 GLY G 50 ? ASN G 54 ? GLY G 323 ASN G 327 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU D 9 ? N LEU D 282 O ASP J 10 ? O ASP J 283 AA1 2 3 O LEU J 9 ? O LEU J 282 N ASP A 10 ? N ASP A 283 AA1 3 4 N LEU A 9 ? N LEU A 282 O ASP G 10 ? O ASP G 283 AA2 1 2 N ASN D 13 ? N ASN D 286 O VAL J 14 ? O VAL J 287 AA2 2 3 O ASN J 13 ? O ASN J 286 N VAL A 14 ? N VAL A 287 AA2 3 4 N ASN A 13 ? N ASN A 286 O VAL G 14 ? O VAL G 287 AA3 1 2 N LYS D 25 ? N LYS D 298 O HIS J 26 ? O HIS J 299 AA3 2 3 O LYS J 25 ? O LYS J 298 N HIS A 26 ? N HIS A 299 AA3 3 4 N LYS A 25 ? N LYS A 298 O HIS G 26 ? O HIS G 299 AA4 1 2 N TYR D 37 ? N TYR D 310 O VAL J 36 ? O VAL J 309 AA4 2 3 O TYR J 37 ? O TYR J 310 N VAL A 36 ? N VAL A 309 AA4 3 4 N TYR A 37 ? N TYR A 310 O VAL G 36 ? O VAL G 309 AA5 1 2 N VAL D 40 ? N VAL D 313 O ASP J 41 ? O ASP J 314 AA5 2 3 O VAL J 40 ? O VAL J 313 N ASP A 41 ? N ASP A 314 AA5 3 4 N VAL A 40 ? N VAL A 313 O ASP G 41 ? O ASP G 314 AA6 1 2 N LYS D 44 ? N LYS D 317 O VAL J 45 ? O VAL J 318 AA6 2 3 O LYS J 44 ? O LYS J 317 N VAL A 45 ? N VAL A 318 AA6 3 4 N LYS A 44 ? N LYS A 317 O VAL G 45 ? O VAL G 318 AA7 1 2 N GLY D 50 ? N GLY D 323 O SER J 51 ? O SER J 324 AA7 2 3 O GLY J 50 ? O GLY J 323 N SER A 51 ? N SER A 324 AA7 3 4 N GLY A 50 ? N GLY A 323 O SER G 51 ? O SER G 324 # _atom_sites.entry_id 8Q96 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 274 274 LYS LYS A . n A 1 2 VAL 2 275 275 VAL VAL A . n A 1 3 GLN 3 276 276 GLN GLN A . n A 1 4 ILE 4 277 277 ILE ILE A . n A 1 5 ILE 5 278 278 ILE ILE A . n A 1 6 ASN 6 279 279 ASN ASN A . n A 1 7 LYS 7 280 280 LYS LYS A . n A 1 8 LYS 8 281 281 LYS LYS A . n A 1 9 LEU 9 282 282 LEU LEU A . n A 1 10 ASP 10 283 283 ASP ASP A . n A 1 11 LEU 11 284 284 LEU LEU A . n A 1 12 SER 12 285 285 SER SER A . n A 1 13 ASN 13 286 286 ASN ASN A . n A 1 14 VAL 14 287 287 VAL VAL A . n A 1 15 GLN 15 288 288 GLN GLN A . n A 1 16 SER 16 289 289 SER SER A . n A 1 17 LYS 17 290 290 LYS LYS A . n A 1 18 CYS 18 291 291 CYS CYS A . n A 1 19 GLY 19 292 292 GLY GLY A . n A 1 20 SER 20 293 293 SER SER A . n A 1 21 LYS 21 294 294 LYS LYS A . n A 1 22 ASP 22 295 295 ASP ASP A . n A 1 23 ASN 23 296 296 ASN ASN A . n A 1 24 ILE 24 297 297 ILE ILE A . n A 1 25 LYS 25 298 298 LYS LYS A . n A 1 26 HIS 26 299 299 HIS HIS A . n A 1 27 VAL 27 300 300 VAL VAL A . n A 1 28 SER 28 301 301 SER SER A . n A 1 29 GLY 29 302 302 GLY GLY A . n A 1 30 GLY 30 303 303 GLY GLY A . n A 1 31 GLY 31 304 304 GLY GLY A . n A 1 32 SER 32 305 305 SER SER A . n A 1 33 VAL 33 306 306 VAL VAL A . n A 1 34 GLN 34 307 307 GLN GLN A . n A 1 35 ILE 35 308 308 ILE ILE A . n A 1 36 VAL 36 309 309 VAL VAL A . n A 1 37 TYR 37 310 310 TYR TYR A . n A 1 38 LYS 38 311 311 LYS LYS A . n A 1 39 PRO 39 312 312 PRO PRO A . n A 1 40 VAL 40 313 313 VAL VAL A . n A 1 41 ASP 41 314 314 ASP ASP A . n A 1 42 LEU 42 315 315 LEU LEU A . n A 1 43 SER 43 316 316 SER SER A . n A 1 44 LYS 44 317 317 LYS LYS A . n A 1 45 VAL 45 318 318 VAL VAL A . n A 1 46 THR 46 319 319 THR THR A . n A 1 47 SER 47 320 320 SER SER A . n A 1 48 LYS 48 321 321 LYS LYS A . n A 1 49 CYS 49 322 322 CYS CYS A . n A 1 50 GLY 50 323 323 GLY GLY A . n A 1 51 SER 51 324 324 SER SER A . n A 1 52 LEU 52 325 325 LEU LEU A . n A 1 53 GLY 53 326 326 GLY GLY A . n A 1 54 ASN 54 327 327 ASN ASN A . n A 1 55 ILE 55 328 328 ILE ILE A . n A 1 56 HIS 56 329 329 HIS HIS A . n B 2 1 UNK 1 1 1 UNK UNK B . n B 2 2 UNK 2 2 2 UNK UNK B . n B 2 3 UNK 3 3 3 UNK UNK B . n B 2 4 UNK 4 4 4 UNK UNK B . n B 2 5 UNK 5 5 5 UNK UNK B . n B 2 6 UNK 6 6 6 UNK UNK B . n B 2 7 UNK 7 7 7 UNK UNK B . n B 2 8 UNK 8 8 8 UNK UNK B . n B 2 9 UNK 9 9 9 UNK UNK B . n B 2 10 UNK 10 10 10 UNK UNK B . n B 2 11 UNK 11 11 11 UNK UNK B . n B 2 12 UNK 12 12 12 UNK UNK B . n C 3 1 UNK 1 1 1 UNK UNK C . n C 3 2 UNK 2 2 2 UNK UNK C . n C 3 3 UNK 3 3 3 UNK UNK C . n C 3 4 UNK 4 4 4 UNK UNK C . n C 3 5 UNK 5 5 5 UNK UNK C . n C 3 6 UNK 6 6 6 UNK UNK C . n C 3 7 UNK 7 7 7 UNK UNK C . n C 3 8 UNK 8 8 8 UNK UNK C . n C 3 9 UNK 9 9 9 UNK UNK C . n C 3 10 UNK 10 10 10 UNK UNK C . n D 1 1 LYS 1 274 274 LYS LYS D . n D 1 2 VAL 2 275 275 VAL VAL D . n D 1 3 GLN 3 276 276 GLN GLN D . n D 1 4 ILE 4 277 277 ILE ILE D . n D 1 5 ILE 5 278 278 ILE ILE D . n D 1 6 ASN 6 279 279 ASN ASN D . n D 1 7 LYS 7 280 280 LYS LYS D . n D 1 8 LYS 8 281 281 LYS LYS D . n D 1 9 LEU 9 282 282 LEU LEU D . n D 1 10 ASP 10 283 283 ASP ASP D . n D 1 11 LEU 11 284 284 LEU LEU D . n D 1 12 SER 12 285 285 SER SER D . n D 1 13 ASN 13 286 286 ASN ASN D . n D 1 14 VAL 14 287 287 VAL VAL D . n D 1 15 GLN 15 288 288 GLN GLN D . n D 1 16 SER 16 289 289 SER SER D . n D 1 17 LYS 17 290 290 LYS LYS D . n D 1 18 CYS 18 291 291 CYS CYS D . n D 1 19 GLY 19 292 292 GLY GLY D . n D 1 20 SER 20 293 293 SER SER D . n D 1 21 LYS 21 294 294 LYS LYS D . n D 1 22 ASP 22 295 295 ASP ASP D . n D 1 23 ASN 23 296 296 ASN ASN D . n D 1 24 ILE 24 297 297 ILE ILE D . n D 1 25 LYS 25 298 298 LYS LYS D . n D 1 26 HIS 26 299 299 HIS HIS D . n D 1 27 VAL 27 300 300 VAL VAL D . n D 1 28 SER 28 301 301 SER SER D . n D 1 29 GLY 29 302 302 GLY GLY D . n D 1 30 GLY 30 303 303 GLY GLY D . n D 1 31 GLY 31 304 304 GLY GLY D . n D 1 32 SER 32 305 305 SER SER D . n D 1 33 VAL 33 306 306 VAL VAL D . n D 1 34 GLN 34 307 307 GLN GLN D . n D 1 35 ILE 35 308 308 ILE ILE D . n D 1 36 VAL 36 309 309 VAL VAL D . n D 1 37 TYR 37 310 310 TYR TYR D . n D 1 38 LYS 38 311 311 LYS LYS D . n D 1 39 PRO 39 312 312 PRO PRO D . n D 1 40 VAL 40 313 313 VAL VAL D . n D 1 41 ASP 41 314 314 ASP ASP D . n D 1 42 LEU 42 315 315 LEU LEU D . n D 1 43 SER 43 316 316 SER SER D . n D 1 44 LYS 44 317 317 LYS LYS D . n D 1 45 VAL 45 318 318 VAL VAL D . n D 1 46 THR 46 319 319 THR THR D . n D 1 47 SER 47 320 320 SER SER D . n D 1 48 LYS 48 321 321 LYS LYS D . n D 1 49 CYS 49 322 322 CYS CYS D . n D 1 50 GLY 50 323 323 GLY GLY D . n D 1 51 SER 51 324 324 SER SER D . n D 1 52 LEU 52 325 325 LEU LEU D . n D 1 53 GLY 53 326 326 GLY GLY D . n D 1 54 ASN 54 327 327 ASN ASN D . n D 1 55 ILE 55 328 328 ILE ILE D . n D 1 56 HIS 56 329 329 HIS HIS D . n E 2 1 UNK 1 1 1 UNK UNK E . n E 2 2 UNK 2 2 2 UNK UNK E . n E 2 3 UNK 3 3 3 UNK UNK E . n E 2 4 UNK 4 4 4 UNK UNK E . n E 2 5 UNK 5 5 5 UNK UNK E . n E 2 6 UNK 6 6 6 UNK UNK E . n E 2 7 UNK 7 7 7 UNK UNK E . n E 2 8 UNK 8 8 8 UNK UNK E . n E 2 9 UNK 9 9 9 UNK UNK E . n E 2 10 UNK 10 10 10 UNK UNK E . n E 2 11 UNK 11 11 11 UNK UNK E . n E 2 12 UNK 12 12 12 UNK UNK E . n F 3 1 UNK 1 1 1 UNK UNK F . n F 3 2 UNK 2 2 2 UNK UNK F . n F 3 3 UNK 3 3 3 UNK UNK F . n F 3 4 UNK 4 4 4 UNK UNK F . n F 3 5 UNK 5 5 5 UNK UNK F . n F 3 6 UNK 6 6 6 UNK UNK F . n F 3 7 UNK 7 7 7 UNK UNK F . n F 3 8 UNK 8 8 8 UNK UNK F . n F 3 9 UNK 9 9 9 UNK UNK F . n F 3 10 UNK 10 10 10 UNK UNK F . n G 1 1 LYS 1 274 274 LYS LYS G . n G 1 2 VAL 2 275 275 VAL VAL G . n G 1 3 GLN 3 276 276 GLN GLN G . n G 1 4 ILE 4 277 277 ILE ILE G . n G 1 5 ILE 5 278 278 ILE ILE G . n G 1 6 ASN 6 279 279 ASN ASN G . n G 1 7 LYS 7 280 280 LYS LYS G . n G 1 8 LYS 8 281 281 LYS LYS G . n G 1 9 LEU 9 282 282 LEU LEU G . n G 1 10 ASP 10 283 283 ASP ASP G . n G 1 11 LEU 11 284 284 LEU LEU G . n G 1 12 SER 12 285 285 SER SER G . n G 1 13 ASN 13 286 286 ASN ASN G . n G 1 14 VAL 14 287 287 VAL VAL G . n G 1 15 GLN 15 288 288 GLN GLN G . n G 1 16 SER 16 289 289 SER SER G . n G 1 17 LYS 17 290 290 LYS LYS G . n G 1 18 CYS 18 291 291 CYS CYS G . n G 1 19 GLY 19 292 292 GLY GLY G . n G 1 20 SER 20 293 293 SER SER G . n G 1 21 LYS 21 294 294 LYS LYS G . n G 1 22 ASP 22 295 295 ASP ASP G . n G 1 23 ASN 23 296 296 ASN ASN G . n G 1 24 ILE 24 297 297 ILE ILE G . n G 1 25 LYS 25 298 298 LYS LYS G . n G 1 26 HIS 26 299 299 HIS HIS G . n G 1 27 VAL 27 300 300 VAL VAL G . n G 1 28 SER 28 301 301 SER SER G . n G 1 29 GLY 29 302 302 GLY GLY G . n G 1 30 GLY 30 303 303 GLY GLY G . n G 1 31 GLY 31 304 304 GLY GLY G . n G 1 32 SER 32 305 305 SER SER G . n G 1 33 VAL 33 306 306 VAL VAL G . n G 1 34 GLN 34 307 307 GLN GLN G . n G 1 35 ILE 35 308 308 ILE ILE G . n G 1 36 VAL 36 309 309 VAL VAL G . n G 1 37 TYR 37 310 310 TYR TYR G . n G 1 38 LYS 38 311 311 LYS LYS G . n G 1 39 PRO 39 312 312 PRO PRO G . n G 1 40 VAL 40 313 313 VAL VAL G . n G 1 41 ASP 41 314 314 ASP ASP G . n G 1 42 LEU 42 315 315 LEU LEU G . n G 1 43 SER 43 316 316 SER SER G . n G 1 44 LYS 44 317 317 LYS LYS G . n G 1 45 VAL 45 318 318 VAL VAL G . n G 1 46 THR 46 319 319 THR THR G . n G 1 47 SER 47 320 320 SER SER G . n G 1 48 LYS 48 321 321 LYS LYS G . n G 1 49 CYS 49 322 322 CYS CYS G . n G 1 50 GLY 50 323 323 GLY GLY G . n G 1 51 SER 51 324 324 SER SER G . n G 1 52 LEU 52 325 325 LEU LEU G . n G 1 53 GLY 53 326 326 GLY GLY G . n G 1 54 ASN 54 327 327 ASN ASN G . n G 1 55 ILE 55 328 328 ILE ILE G . n G 1 56 HIS 56 329 329 HIS HIS G . n H 2 1 UNK 1 1 1 UNK UNK H . n H 2 2 UNK 2 2 2 UNK UNK H . n H 2 3 UNK 3 3 3 UNK UNK H . n H 2 4 UNK 4 4 4 UNK UNK H . n H 2 5 UNK 5 5 5 UNK UNK H . n H 2 6 UNK 6 6 6 UNK UNK H . n H 2 7 UNK 7 7 7 UNK UNK H . n H 2 8 UNK 8 8 8 UNK UNK H . n H 2 9 UNK 9 9 9 UNK UNK H . n H 2 10 UNK 10 10 10 UNK UNK H . n H 2 11 UNK 11 11 11 UNK UNK H . n H 2 12 UNK 12 12 12 UNK UNK H . n I 3 1 UNK 1 1 1 UNK UNK I . n I 3 2 UNK 2 2 2 UNK UNK I . n I 3 3 UNK 3 3 3 UNK UNK I . n I 3 4 UNK 4 4 4 UNK UNK I . n I 3 5 UNK 5 5 5 UNK UNK I . n I 3 6 UNK 6 6 6 UNK UNK I . n I 3 7 UNK 7 7 7 UNK UNK I . n I 3 8 UNK 8 8 8 UNK UNK I . n I 3 9 UNK 9 9 9 UNK UNK I . n I 3 10 UNK 10 10 10 UNK UNK I . n J 1 1 LYS 1 274 274 LYS LYS J . n J 1 2 VAL 2 275 275 VAL VAL J . n J 1 3 GLN 3 276 276 GLN GLN J . n J 1 4 ILE 4 277 277 ILE ILE J . n J 1 5 ILE 5 278 278 ILE ILE J . n J 1 6 ASN 6 279 279 ASN ASN J . n J 1 7 LYS 7 280 280 LYS LYS J . n J 1 8 LYS 8 281 281 LYS LYS J . n J 1 9 LEU 9 282 282 LEU LEU J . n J 1 10 ASP 10 283 283 ASP ASP J . n J 1 11 LEU 11 284 284 LEU LEU J . n J 1 12 SER 12 285 285 SER SER J . n J 1 13 ASN 13 286 286 ASN ASN J . n J 1 14 VAL 14 287 287 VAL VAL J . n J 1 15 GLN 15 288 288 GLN GLN J . n J 1 16 SER 16 289 289 SER SER J . n J 1 17 LYS 17 290 290 LYS LYS J . n J 1 18 CYS 18 291 291 CYS CYS J . n J 1 19 GLY 19 292 292 GLY GLY J . n J 1 20 SER 20 293 293 SER SER J . n J 1 21 LYS 21 294 294 LYS LYS J . n J 1 22 ASP 22 295 295 ASP ASP J . n J 1 23 ASN 23 296 296 ASN ASN J . n J 1 24 ILE 24 297 297 ILE ILE J . n J 1 25 LYS 25 298 298 LYS LYS J . n J 1 26 HIS 26 299 299 HIS HIS J . n J 1 27 VAL 27 300 300 VAL VAL J . n J 1 28 SER 28 301 301 SER SER J . n J 1 29 GLY 29 302 302 GLY GLY J . n J 1 30 GLY 30 303 303 GLY GLY J . n J 1 31 GLY 31 304 304 GLY GLY J . n J 1 32 SER 32 305 305 SER SER J . n J 1 33 VAL 33 306 306 VAL VAL J . n J 1 34 GLN 34 307 307 GLN GLN J . n J 1 35 ILE 35 308 308 ILE ILE J . n J 1 36 VAL 36 309 309 VAL VAL J . n J 1 37 TYR 37 310 310 TYR TYR J . n J 1 38 LYS 38 311 311 LYS LYS J . n J 1 39 PRO 39 312 312 PRO PRO J . n J 1 40 VAL 40 313 313 VAL VAL J . n J 1 41 ASP 41 314 314 ASP ASP J . n J 1 42 LEU 42 315 315 LEU LEU J . n J 1 43 SER 43 316 316 SER SER J . n J 1 44 LYS 44 317 317 LYS LYS J . n J 1 45 VAL 45 318 318 VAL VAL J . n J 1 46 THR 46 319 319 THR THR J . n J 1 47 SER 47 320 320 SER SER J . n J 1 48 LYS 48 321 321 LYS LYS J . n J 1 49 CYS 49 322 322 CYS CYS J . n J 1 50 GLY 50 323 323 GLY GLY J . n J 1 51 SER 51 324 324 SER SER J . n J 1 52 LEU 52 325 325 LEU LEU J . n J 1 53 GLY 53 326 326 GLY GLY J . n J 1 54 ASN 54 327 327 ASN ASN J . n J 1 55 ILE 55 328 328 ILE ILE J . n J 1 56 HIS 56 329 329 HIS HIS J . n K 2 1 UNK 1 1 1 UNK UNK K . n K 2 2 UNK 2 2 2 UNK UNK K . n K 2 3 UNK 3 3 3 UNK UNK K . n K 2 4 UNK 4 4 4 UNK UNK K . n K 2 5 UNK 5 5 5 UNK UNK K . n K 2 6 UNK 6 6 6 UNK UNK K . n K 2 7 UNK 7 7 7 UNK UNK K . n K 2 8 UNK 8 8 8 UNK UNK K . n K 2 9 UNK 9 9 9 UNK UNK K . n K 2 10 UNK 10 10 10 UNK UNK K . n K 2 11 UNK 11 11 11 UNK UNK K . n K 2 12 UNK 12 12 12 UNK UNK K . n L 3 1 UNK 1 1 1 UNK UNK L . n L 3 2 UNK 2 2 2 UNK UNK L . n L 3 3 UNK 3 3 3 UNK UNK L . n L 3 4 UNK 4 4 4 UNK UNK L . n L 3 5 UNK 5 5 5 UNK UNK L . n L 3 6 UNK 6 6 6 UNK UNK L . n L 3 7 UNK 7 7 7 UNK UNK L . n L 3 8 UNK 8 8 8 UNK UNK L . n L 3 9 UNK 9 9 9 UNK UNK L . n L 3 10 UNK 10 10 10 UNK UNK L . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 scheres@mrc-lmb.cam.ac.uk Sjors Scheres H.W. 'principal investigator/group leader' 0000-0002-0462-6540 4 mg@mrc-lmb.cam.ac.uk Michel Goedert ? 'principal investigator/group leader' 0000-0002-5214-7886 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-10-11 2 'Structure model' 1 1 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8Q96 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8Q96 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.09 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 22760 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name 'P301S Tau Protein Filament (Tg2541)' _em_entity_assembly.details 'Human P301S tau filaments extracted from the brains of transgenic mouse line Tg2541' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2, 3' # _em_imaging.entry_id 8Q96 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1800 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_vitrification.entry_id 8Q96 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8Q96 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 298 ? ? -89.62 -70.00 2 1 SER A 324 ? ? 54.23 71.88 3 1 UNK B 7 ? ? -162.46 101.13 4 1 UNK B 9 ? ? -157.18 89.97 5 1 UNK C 6 ? ? -151.34 89.99 6 1 LYS D 298 ? ? -89.62 -70.03 7 1 SER D 324 ? ? 54.20 71.86 8 1 UNK E 7 ? ? -162.48 101.17 9 1 UNK E 9 ? ? -157.17 89.99 10 1 UNK F 6 ? ? -151.32 89.98 11 1 SER G 324 ? ? 54.21 71.85 12 1 UNK H 7 ? ? -162.47 101.10 13 1 UNK H 9 ? ? -157.20 89.96 14 1 UNK I 6 ? ? -151.36 90.00 15 1 LYS J 298 ? ? -89.60 -70.01 16 1 SER J 324 ? ? 54.19 71.85 17 1 UNK K 7 ? ? -162.48 101.08 18 1 UNK K 9 ? ? -157.16 89.95 19 1 UNK L 6 ? ? -151.32 90.00 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 CYS N N N N 34 CYS CA C N R 35 CYS C C N N 36 CYS O O N N 37 CYS CB C N N 38 CYS SG S N N 39 CYS OXT O N N 40 CYS H H N N 41 CYS H2 H N N 42 CYS HA H N N 43 CYS HB2 H N N 44 CYS HB3 H N N 45 CYS HG H N N 46 CYS HXT H N N 47 GLN N N N N 48 GLN CA C N S 49 GLN C C N N 50 GLN O O N N 51 GLN CB C N N 52 GLN CG C N N 53 GLN CD C N N 54 GLN OE1 O N N 55 GLN NE2 N N N 56 GLN OXT O N N 57 GLN H H N N 58 GLN H2 H N N 59 GLN HA H N N 60 GLN HB2 H N N 61 GLN HB3 H N N 62 GLN HG2 H N N 63 GLN HG3 H N N 64 GLN HE21 H N N 65 GLN HE22 H N N 66 GLN HXT H N N 67 GLY N N N N 68 GLY CA C N N 69 GLY C C N N 70 GLY O O N N 71 GLY OXT O N N 72 GLY H H N N 73 GLY H2 H N N 74 GLY HA2 H N N 75 GLY HA3 H N N 76 GLY HXT H N N 77 HIS N N N N 78 HIS CA C N S 79 HIS C C N N 80 HIS O O N N 81 HIS CB C N N 82 HIS CG C Y N 83 HIS ND1 N Y N 84 HIS CD2 C Y N 85 HIS CE1 C Y N 86 HIS NE2 N Y N 87 HIS OXT O N N 88 HIS H H N N 89 HIS H2 H N N 90 HIS HA H N N 91 HIS HB2 H N N 92 HIS HB3 H N N 93 HIS HD1 H N N 94 HIS HD2 H N N 95 HIS HE1 H N N 96 HIS HE2 H N N 97 HIS HXT H N N 98 ILE N N N N 99 ILE CA C N S 100 ILE C C N N 101 ILE O O N N 102 ILE CB C N S 103 ILE CG1 C N N 104 ILE CG2 C N N 105 ILE CD1 C N N 106 ILE OXT O N N 107 ILE H H N N 108 ILE H2 H N N 109 ILE HA H N N 110 ILE HB H N N 111 ILE HG12 H N N 112 ILE HG13 H N N 113 ILE HG21 H N N 114 ILE HG22 H N N 115 ILE HG23 H N N 116 ILE HD11 H N N 117 ILE HD12 H N N 118 ILE HD13 H N N 119 ILE HXT H N N 120 LEU N N N N 121 LEU CA C N S 122 LEU C C N N 123 LEU O O N N 124 LEU CB C N N 125 LEU CG C N N 126 LEU CD1 C N N 127 LEU CD2 C N N 128 LEU OXT O N N 129 LEU H H N N 130 LEU H2 H N N 131 LEU HA H N N 132 LEU HB2 H N N 133 LEU HB3 H N N 134 LEU HG H N N 135 LEU HD11 H N N 136 LEU HD12 H N N 137 LEU HD13 H N N 138 LEU HD21 H N N 139 LEU HD22 H N N 140 LEU HD23 H N N 141 LEU HXT H N N 142 LYS N N N N 143 LYS CA C N S 144 LYS C C N N 145 LYS O O N N 146 LYS CB C N N 147 LYS CG C N N 148 LYS CD C N N 149 LYS CE C N N 150 LYS NZ N N N 151 LYS OXT O N N 152 LYS H H N N 153 LYS H2 H N N 154 LYS HA H N N 155 LYS HB2 H N N 156 LYS HB3 H N N 157 LYS HG2 H N N 158 LYS HG3 H N N 159 LYS HD2 H N N 160 LYS HD3 H N N 161 LYS HE2 H N N 162 LYS HE3 H N N 163 LYS HZ1 H N N 164 LYS HZ2 H N N 165 LYS HZ3 H N N 166 LYS HXT H N N 167 PRO N N N N 168 PRO CA C N S 169 PRO C C N N 170 PRO O O N N 171 PRO CB C N N 172 PRO CG C N N 173 PRO CD C N N 174 PRO OXT O N N 175 PRO H H N N 176 PRO HA H N N 177 PRO HB2 H N N 178 PRO HB3 H N N 179 PRO HG2 H N N 180 PRO HG3 H N N 181 PRO HD2 H N N 182 PRO HD3 H N N 183 PRO HXT H N N 184 SER N N N N 185 SER CA C N S 186 SER C C N N 187 SER O O N N 188 SER CB C N N 189 SER OG O N N 190 SER OXT O N N 191 SER H H N N 192 SER H2 H N N 193 SER HA H N N 194 SER HB2 H N N 195 SER HB3 H N N 196 SER HG H N N 197 SER HXT H N N 198 THR N N N N 199 THR CA C N S 200 THR C C N N 201 THR O O N N 202 THR CB C N R 203 THR OG1 O N N 204 THR CG2 C N N 205 THR OXT O N N 206 THR H H N N 207 THR H2 H N N 208 THR HA H N N 209 THR HB H N N 210 THR HG1 H N N 211 THR HG21 H N N 212 THR HG22 H N N 213 THR HG23 H N N 214 THR HXT H N N 215 TYR N N N N 216 TYR CA C N S 217 TYR C C N N 218 TYR O O N N 219 TYR CB C N N 220 TYR CG C Y N 221 TYR CD1 C Y N 222 TYR CD2 C Y N 223 TYR CE1 C Y N 224 TYR CE2 C Y N 225 TYR CZ C Y N 226 TYR OH O N N 227 TYR OXT O N N 228 TYR H H N N 229 TYR H2 H N N 230 TYR HA H N N 231 TYR HB2 H N N 232 TYR HB3 H N N 233 TYR HD1 H N N 234 TYR HD2 H N N 235 TYR HE1 H N N 236 TYR HE2 H N N 237 TYR HH H N N 238 TYR HXT H N N 239 VAL N N N N 240 VAL CA C N S 241 VAL C C N N 242 VAL O O N N 243 VAL CB C N N 244 VAL CG1 C N N 245 VAL CG2 C N N 246 VAL OXT O N N 247 VAL H H N N 248 VAL H2 H N N 249 VAL HA H N N 250 VAL HB H N N 251 VAL HG11 H N N 252 VAL HG12 H N N 253 VAL HG13 H N N 254 VAL HG21 H N N 255 VAL HG22 H N N 256 VAL HG23 H N N 257 VAL HXT H N N 258 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 CYS N CA sing N N 32 CYS N H sing N N 33 CYS N H2 sing N N 34 CYS CA C sing N N 35 CYS CA CB sing N N 36 CYS CA HA sing N N 37 CYS C O doub N N 38 CYS C OXT sing N N 39 CYS CB SG sing N N 40 CYS CB HB2 sing N N 41 CYS CB HB3 sing N N 42 CYS SG HG sing N N 43 CYS OXT HXT sing N N 44 GLN N CA sing N N 45 GLN N H sing N N 46 GLN N H2 sing N N 47 GLN CA C sing N N 48 GLN CA CB sing N N 49 GLN CA HA sing N N 50 GLN C O doub N N 51 GLN C OXT sing N N 52 GLN CB CG sing N N 53 GLN CB HB2 sing N N 54 GLN CB HB3 sing N N 55 GLN CG CD sing N N 56 GLN CG HG2 sing N N 57 GLN CG HG3 sing N N 58 GLN CD OE1 doub N N 59 GLN CD NE2 sing N N 60 GLN NE2 HE21 sing N N 61 GLN NE2 HE22 sing N N 62 GLN OXT HXT sing N N 63 GLY N CA sing N N 64 GLY N H sing N N 65 GLY N H2 sing N N 66 GLY CA C sing N N 67 GLY CA HA2 sing N N 68 GLY CA HA3 sing N N 69 GLY C O doub N N 70 GLY C OXT sing N N 71 GLY OXT HXT sing N N 72 HIS N CA sing N N 73 HIS N H sing N N 74 HIS N H2 sing N N 75 HIS CA C sing N N 76 HIS CA CB sing N N 77 HIS CA HA sing N N 78 HIS C O doub N N 79 HIS C OXT sing N N 80 HIS CB CG sing N N 81 HIS CB HB2 sing N N 82 HIS CB HB3 sing N N 83 HIS CG ND1 sing Y N 84 HIS CG CD2 doub Y N 85 HIS ND1 CE1 doub Y N 86 HIS ND1 HD1 sing N N 87 HIS CD2 NE2 sing Y N 88 HIS CD2 HD2 sing N N 89 HIS CE1 NE2 sing Y N 90 HIS CE1 HE1 sing N N 91 HIS NE2 HE2 sing N N 92 HIS OXT HXT sing N N 93 ILE N CA sing N N 94 ILE N H sing N N 95 ILE N H2 sing N N 96 ILE CA C sing N N 97 ILE CA CB sing N N 98 ILE CA HA sing N N 99 ILE C O doub N N 100 ILE C OXT sing N N 101 ILE CB CG1 sing N N 102 ILE CB CG2 sing N N 103 ILE CB HB sing N N 104 ILE CG1 CD1 sing N N 105 ILE CG1 HG12 sing N N 106 ILE CG1 HG13 sing N N 107 ILE CG2 HG21 sing N N 108 ILE CG2 HG22 sing N N 109 ILE CG2 HG23 sing N N 110 ILE CD1 HD11 sing N N 111 ILE CD1 HD12 sing N N 112 ILE CD1 HD13 sing N N 113 ILE OXT HXT sing N N 114 LEU N CA sing N N 115 LEU N H sing N N 116 LEU N H2 sing N N 117 LEU CA C sing N N 118 LEU CA CB sing N N 119 LEU CA HA sing N N 120 LEU C O doub N N 121 LEU C OXT sing N N 122 LEU CB CG sing N N 123 LEU CB HB2 sing N N 124 LEU CB HB3 sing N N 125 LEU CG CD1 sing N N 126 LEU CG CD2 sing N N 127 LEU CG HG sing N N 128 LEU CD1 HD11 sing N N 129 LEU CD1 HD12 sing N N 130 LEU CD1 HD13 sing N N 131 LEU CD2 HD21 sing N N 132 LEU CD2 HD22 sing N N 133 LEU CD2 HD23 sing N N 134 LEU OXT HXT sing N N 135 LYS N CA sing N N 136 LYS N H sing N N 137 LYS N H2 sing N N 138 LYS CA C sing N N 139 LYS CA CB sing N N 140 LYS CA HA sing N N 141 LYS C O doub N N 142 LYS C OXT sing N N 143 LYS CB CG sing N N 144 LYS CB HB2 sing N N 145 LYS CB HB3 sing N N 146 LYS CG CD sing N N 147 LYS CG HG2 sing N N 148 LYS CG HG3 sing N N 149 LYS CD CE sing N N 150 LYS CD HD2 sing N N 151 LYS CD HD3 sing N N 152 LYS CE NZ sing N N 153 LYS CE HE2 sing N N 154 LYS CE HE3 sing N N 155 LYS NZ HZ1 sing N N 156 LYS NZ HZ2 sing N N 157 LYS NZ HZ3 sing N N 158 LYS OXT HXT sing N N 159 PRO N CA sing N N 160 PRO N CD sing N N 161 PRO N H sing N N 162 PRO CA C sing N N 163 PRO CA CB sing N N 164 PRO CA HA sing N N 165 PRO C O doub N N 166 PRO C OXT sing N N 167 PRO CB CG sing N N 168 PRO CB HB2 sing N N 169 PRO CB HB3 sing N N 170 PRO CG CD sing N N 171 PRO CG HG2 sing N N 172 PRO CG HG3 sing N N 173 PRO CD HD2 sing N N 174 PRO CD HD3 sing N N 175 PRO OXT HXT sing N N 176 SER N CA sing N N 177 SER N H sing N N 178 SER N H2 sing N N 179 SER CA C sing N N 180 SER CA CB sing N N 181 SER CA HA sing N N 182 SER C O doub N N 183 SER C OXT sing N N 184 SER CB OG sing N N 185 SER CB HB2 sing N N 186 SER CB HB3 sing N N 187 SER OG HG sing N N 188 SER OXT HXT sing N N 189 THR N CA sing N N 190 THR N H sing N N 191 THR N H2 sing N N 192 THR CA C sing N N 193 THR CA CB sing N N 194 THR CA HA sing N N 195 THR C O doub N N 196 THR C OXT sing N N 197 THR CB OG1 sing N N 198 THR CB CG2 sing N N 199 THR CB HB sing N N 200 THR OG1 HG1 sing N N 201 THR CG2 HG21 sing N N 202 THR CG2 HG22 sing N N 203 THR CG2 HG23 sing N N 204 THR OXT HXT sing N N 205 TYR N CA sing N N 206 TYR N H sing N N 207 TYR N H2 sing N N 208 TYR CA C sing N N 209 TYR CA CB sing N N 210 TYR CA HA sing N N 211 TYR C O doub N N 212 TYR C OXT sing N N 213 TYR CB CG sing N N 214 TYR CB HB2 sing N N 215 TYR CB HB3 sing N N 216 TYR CG CD1 doub Y N 217 TYR CG CD2 sing Y N 218 TYR CD1 CE1 sing Y N 219 TYR CD1 HD1 sing N N 220 TYR CD2 CE2 doub Y N 221 TYR CD2 HD2 sing N N 222 TYR CE1 CZ doub Y N 223 TYR CE1 HE1 sing N N 224 TYR CE2 CZ sing Y N 225 TYR CE2 HE2 sing N N 226 TYR CZ OH sing N N 227 TYR OH HH sing N N 228 TYR OXT HXT sing N N 229 VAL N CA sing N N 230 VAL N H sing N N 231 VAL N H2 sing N N 232 VAL CA C sing N N 233 VAL CA CB sing N N 234 VAL CA HA sing N N 235 VAL C O doub N N 236 VAL C OXT sing N N 237 VAL CB CG1 sing N N 238 VAL CB CG2 sing N N 239 VAL CB HB sing N N 240 VAL CG1 HG11 sing N N 241 VAL CG1 HG12 sing N N 242 VAL CG1 HG13 sing N N 243 VAL CG2 HG21 sing N N 244 VAL CG2 HG22 sing N N 245 VAL CG2 HG23 sing N N 246 VAL OXT HXT sing N N 247 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 10090 _em_entity_assembly_naturalsource.organism 'Mus musculus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ Brain _em_entity_assembly_naturalsource.strain Tg2541 _em_entity_assembly_naturalsource.tissue Brainstem _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -0.83 _em_helical_entity.axial_rise_per_subunit 4.75 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 34.2 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? RELION 4.1 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? Servalcat ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 4.1 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC-UP-A025-1013 1 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC-U105184291 2 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' #