HEADER DE NOVO PROTEIN 22-AUG-23 8QAI TITLE X-RAY CRYSTAL STRUCTURE OF A DE NOVO DESIGNED SINGLE-CHAIN PARALLEL TITLE 2 COILED-COIL ALPHA-HELICAL BARREL WITH 7 INNER HELICES, SC-CC-7-LI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SC-CC-7-LI; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COILED COIL, ALPHA-HELICAL BARREL, DE NOVO PROTEIN DESIGN, DE NOVO KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.PETRENAS,K.I.ALBANESE,D.N.WOOLFSON REVDAT 2 07-AUG-24 8QAI 1 JRNL REVDAT 1 03-JUL-24 8QAI 0 JRNL AUTH K.I.ALBANESE,R.PETRENAS,F.PIRRO,E.A.NAUDIN,U.BORUCU, JRNL AUTH 2 W.M.DAWSON,D.A.SCOTT,G.J.LEGGETT,O.D.WEINER,T.A.A.OLIVER, JRNL AUTH 3 D.N.WOOLFSON JRNL TITL RATIONALLY SEEDED COMPUTATIONAL PROTEIN DESIGN OF JRNL TITL 2 ɑ-HELICAL BARRELS. JRNL REF NAT.CHEM.BIOL. V. 20 991 2024 JRNL REFN ESSN 1552-4469 JRNL PMID 38902458 JRNL DOI 10.1038/S41589-024-01642-0 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 23743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.620 REMARK 3 FREE R VALUE TEST SET COUNT : 1572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6300 - 5.5500 0.98 2016 141 0.2223 0.2324 REMARK 3 2 5.5500 - 4.4100 0.99 2020 143 0.2146 0.2487 REMARK 3 3 4.4100 - 3.8500 0.99 2032 145 0.1615 0.1748 REMARK 3 4 3.8500 - 3.5000 0.99 2050 145 0.1854 0.2270 REMARK 3 5 3.5000 - 3.2500 0.99 1991 142 0.2207 0.2605 REMARK 3 6 3.2500 - 3.0600 0.99 2042 145 0.1925 0.2509 REMARK 3 7 3.0600 - 2.9100 0.99 2012 142 0.2014 0.2643 REMARK 3 8 2.9100 - 2.7800 0.98 1997 142 0.1962 0.2765 REMARK 3 9 2.7800 - 2.6700 0.98 2017 144 0.1876 0.2566 REMARK 3 10 2.6700 - 2.5800 0.98 1984 140 0.2041 0.2418 REMARK 3 11 2.5800 - 2.5000 0.97 2010 143 0.2178 0.2975 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4844 REMARK 3 ANGLE : 0.263 6608 REMARK 3 CHIRALITY : 0.029 918 REMARK 3 PLANARITY : 0.001 818 REMARK 3 DIHEDRAL : 15.492 1554 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'B' AND RESID -1 THROUGH 366) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2655 15.2147 32.9429 REMARK 3 T TENSOR REMARK 3 T11: 0.2761 T22: 0.3573 REMARK 3 T33: 0.2553 T12: -0.0288 REMARK 3 T13: -0.0443 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 1.8252 L22: 1.8162 REMARK 3 L33: 3.8795 L12: -0.1332 REMARK 3 L13: 0.7369 L23: -0.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: 0.1267 S13: 0.0627 REMARK 3 S21: 0.1158 S22: 0.0122 S23: -0.2133 REMARK 3 S31: -0.1457 S32: 0.2828 S33: -0.0093 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID -1 THROUGH 368) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3310 0.3391 -3.0493 REMARK 3 T TENSOR REMARK 3 T11: 0.2405 T22: 0.2795 REMARK 3 T33: 0.2088 T12: -0.0266 REMARK 3 T13: -0.0247 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.7320 L22: 1.4580 REMARK 3 L33: 1.3334 L12: 0.2005 REMARK 3 L13: -0.0842 L23: -0.0963 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: 0.0198 S13: -0.0134 REMARK 3 S21: -0.0183 S22: 0.0317 S23: 0.0210 REMARK 3 S31: 0.0392 S32: 0.0300 S33: -0.0223 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92124 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23776 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.08575 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21490 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG-PLUS C2: 1.0 M LITHIUM CHLORIDE, REMARK 280 0.1 M CITRATE, PH 4.0, 20 % W/V PEG 6000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ALA A 24 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLU B 29 REMARK 465 GLY B 56 REMARK 465 GLY B 113 REMARK 465 GLY B 140 REMARK 465 GLY B 170 REMARK 465 GLY B 227 REMARK 465 GLY B 284 REMARK 465 ASP B 285 REMARK 465 LYS B 367 REMARK 465 LYS B 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 0 CG SD CE REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 LEU A 21 CD1 CD2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 ASP A 27 CG OD1 OD2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LYS A 33 NZ REMARK 470 LYS A 40 NZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LYS A 50 CD CE NZ REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 53 CD CE NZ REMARK 470 LYS A 55 CE NZ REMARK 470 LEU A 82 CD1 CD2 REMARK 470 LYS A 83 CD CE NZ REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 89 CE NZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 LYS A 101 CE NZ REMARK 470 LYS A 104 CE NZ REMARK 470 LYS A 110 CD CE NZ REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 146 CD CE NZ REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 GLU A 161 CD OE1 OE2 REMARK 470 LYS A 164 CD CE NZ REMARK 470 GLU A 165 OE1 OE2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 LYS A 206 CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 LYS A 217 NZ REMARK 470 LYS A 218 CD CE NZ REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 LYS A 225 CD CE NZ REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 LYS A 260 CE NZ REMARK 470 LYS A 261 CD CE NZ REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 LYS A 268 CD CE NZ REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 GLU A 279 CD OE1 OE2 REMARK 470 LYS A 282 CD CE NZ REMARK 470 LYS A 283 CE NZ REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 ARG A 320 NE CZ NH1 NH2 REMARK 470 LYS A 321 CE NZ REMARK 470 LYS A 328 CD CE NZ REMARK 470 GLU A 332 CD OE1 OE2 REMARK 470 LYS A 335 CD CE NZ REMARK 470 GLN A 339 CD OE1 NE2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 GLU A 350 CD OE1 OE2 REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 LYS A 367 CG CD CE NZ REMARK 470 LYS A 368 CB CG CD CE NZ REMARK 470 MET B 0 CG SD CE REMARK 470 LEU B 1 CG CD1 CD2 REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 ASP B 27 CG OD1 OD2 REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 LYS B 43 CD CE NZ REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 LEU B 48 CG CD1 CD2 REMARK 470 TYR B 49 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 LYS B 51 CD CE NZ REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 ASP B 57 CG OD1 OD2 REMARK 470 LEU B 58 CG CD1 CD2 REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 ASP B 84 CG OD1 OD2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 LEU B 87 CG CD1 CD2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 TYR B 92 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LEU B 94 CG CD1 CD2 REMARK 470 GLU B 96 CD OE1 OE2 REMARK 470 GLU B 97 CG CD OE1 OE2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 LEU B 105 CG CD1 CD2 REMARK 470 GLU B 107 OE1 OE2 REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 ASP B 114 CG OD1 OD2 REMARK 470 LEU B 115 CG CD1 CD2 REMARK 470 GLN B 125 CG CD OE1 NE2 REMARK 470 ASP B 141 CG OD1 OD2 REMARK 470 LYS B 142 CE NZ REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 GLU B 147 OE1 OE2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 LYS B 153 CE NZ REMARK 470 GLU B 154 CG CD OE1 OE2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 GLU B 165 CG CD OE1 OE2 REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 ASP B 198 CG OD1 OD2 REMARK 470 GLU B 199 CG CD OE1 OE2 REMARK 470 LYS B 215 CD CE NZ REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 470 GLU B 222 CG CD OE1 OE2 REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 LYS B 226 CE NZ REMARK 470 GLU B 257 CG CD OE1 OE2 REMARK 470 LYS B 261 CD CE NZ REMARK 470 GLU B 264 CD OE1 OE2 REMARK 470 LYS B 268 CE NZ REMARK 470 GLU B 271 CG CD OE1 OE2 REMARK 470 LYS B 274 CD CE NZ REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 GLU B 278 CD OE1 OE2 REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 LYS B 282 CG CD CE NZ REMARK 470 LYS B 283 CG CD CE NZ REMARK 470 LEU B 286 CG CD1 CD2 REMARK 470 GLU B 313 CG CD OE1 OE2 REMARK 470 GLU B 314 CG CD OE1 OE2 REMARK 470 THR B 315 CG2 REMARK 470 GLU B 317 CG CD OE1 OE2 REMARK 470 ARG B 320 NE CZ NH1 NH2 REMARK 470 LYS B 321 CD CE NZ REMARK 470 LYS B 327 CD CE NZ REMARK 470 LYS B 328 CD CE NZ REMARK 470 GLU B 332 CG CD OE1 OE2 REMARK 470 LYS B 335 CG CD CE NZ REMARK 470 GLU B 336 CG CD OE1 OE2 REMARK 470 GLN B 339 CD OE1 NE2 REMARK 470 LYS B 340 CE NZ REMARK 470 GLU B 350 CG CD OE1 OE2 REMARK 470 GLU B 357 CD OE1 OE2 REMARK 470 GLU B 364 CG CD OE1 OE2 REMARK 470 ILE B 365 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 26 73.56 57.79 REMARK 500 LYS B 26 72.84 57.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 8QAI A -3 368 PDB 8QAI 8QAI -3 368 DBREF 8QAI B -3 368 PDB 8QAI 8QAI -3 368 SEQRES 1 A 372 GLY SER HIS MET LEU ILE ALA GLU ALA LEU GLU LEU ILE SEQRES 2 A 372 ALA GLU ALA LEU PHE ALA ILE ALA LEU ALA LEU LEU ALA SEQRES 3 A 372 ILE ALA LYS LYS ASP LYS GLU LEU ALA LYS LYS ALA VAL SEQRES 4 A 372 GLU LEU ALA GLU LYS VAL TYR LYS GLU ALA GLU GLU LEU SEQRES 5 A 372 TYR LYS LYS ALA LYS LYS LYS GLY ASP LEU ILE ALA ALA SEQRES 6 A 372 ALA LEU ALA LEU ILE ALA GLN ALA LEU ALA ALA ILE ALA SEQRES 7 A 372 LEU ALA LEU ALA ALA ILE ALA LEU LYS ASP LYS GLU LEU SEQRES 8 A 372 ALA LYS LYS ALA TYR LYS LEU ALA GLU GLU VAL TYR LYS SEQRES 9 A 372 LYS ALA GLU LYS LEU TYR GLU GLU ALA LYS LYS LYS GLY SEQRES 10 A 372 ASP LEU ILE ALA ALA ALA LEU ALA LEU ILE ALA GLN ALA SEQRES 11 A 372 LEU ALA LEU ILE ALA LEU ALA LEU ALA ALA ILE ALA LEU SEQRES 12 A 372 GLY ASP LYS GLU LYS LEU LYS GLU VAL ILE GLU LYS ALA SEQRES 13 A 372 LYS GLU VAL TYR LYS LYS ALA GLU GLU LEU TYR LYS GLU SEQRES 14 A 372 ALA GLU LYS LYS GLY ASP LEU ILE ALA ALA ALA LEU ALA SEQRES 15 A 372 LEU ILE ALA GLN ALA LEU ALA LEU ILE ALA ILE ALA LEU SEQRES 16 A 372 ALA ALA ILE ALA LEU GLY ASP GLU GLU THR LEU LYS GLU SEQRES 17 A 372 VAL LYS GLU LYS ALA LYS GLU VAL TYR GLU LYS ALA LYS SEQRES 18 A 372 LYS VAL ALA GLU GLU ALA GLU LYS LYS GLY ASP LEU ILE SEQRES 19 A 372 ALA ALA ALA LEU ALA LEU ILE ALA GLN ALA LEU ALA LEU SEQRES 20 A 372 ILE ALA ILE ALA LEU ALA ALA ILE ALA LEU GLY ASP GLU SEQRES 21 A 372 GLU GLU LEU LYS LYS VAL ILE GLU GLU ALA LYS LYS VAL SEQRES 22 A 372 TYR GLU GLU ALA LYS LYS ILE TYR GLU GLU ALA LYS LYS SEQRES 23 A 372 LYS GLY ASP LEU ILE ALA ALA ALA LEU ALA LEU ILE ALA SEQRES 24 A 372 GLN ALA LEU ALA LEU ILE ALA ILE ALA LEU ALA ALA ILE SEQRES 25 A 372 ALA LEU GLY ASP GLU GLU THR LEU GLU GLU ALA ARG LYS SEQRES 26 A 372 GLU ALA GLU GLU VAL LYS LYS GLU ALA GLU GLU LEU ALA SEQRES 27 A 372 LYS GLU ALA GLU GLN LYS GLY ASN GLU ILE ALA ALA ALA SEQRES 28 A 372 LEU ALA GLU ILE ALA ILE ALA LEU ALA GLU ILE ALA ILE SEQRES 29 A 372 ALA LEU VAL GLU ILE ALA LYS LYS SEQRES 1 B 372 GLY SER HIS MET LEU ILE ALA GLU ALA LEU GLU LEU ILE SEQRES 2 B 372 ALA GLU ALA LEU PHE ALA ILE ALA LEU ALA LEU LEU ALA SEQRES 3 B 372 ILE ALA LYS LYS ASP LYS GLU LEU ALA LYS LYS ALA VAL SEQRES 4 B 372 GLU LEU ALA GLU LYS VAL TYR LYS GLU ALA GLU GLU LEU SEQRES 5 B 372 TYR LYS LYS ALA LYS LYS LYS GLY ASP LEU ILE ALA ALA SEQRES 6 B 372 ALA LEU ALA LEU ILE ALA GLN ALA LEU ALA ALA ILE ALA SEQRES 7 B 372 LEU ALA LEU ALA ALA ILE ALA LEU LYS ASP LYS GLU LEU SEQRES 8 B 372 ALA LYS LYS ALA TYR LYS LEU ALA GLU GLU VAL TYR LYS SEQRES 9 B 372 LYS ALA GLU LYS LEU TYR GLU GLU ALA LYS LYS LYS GLY SEQRES 10 B 372 ASP LEU ILE ALA ALA ALA LEU ALA LEU ILE ALA GLN ALA SEQRES 11 B 372 LEU ALA LEU ILE ALA LEU ALA LEU ALA ALA ILE ALA LEU SEQRES 12 B 372 GLY ASP LYS GLU LYS LEU LYS GLU VAL ILE GLU LYS ALA SEQRES 13 B 372 LYS GLU VAL TYR LYS LYS ALA GLU GLU LEU TYR LYS GLU SEQRES 14 B 372 ALA GLU LYS LYS GLY ASP LEU ILE ALA ALA ALA LEU ALA SEQRES 15 B 372 LEU ILE ALA GLN ALA LEU ALA LEU ILE ALA ILE ALA LEU SEQRES 16 B 372 ALA ALA ILE ALA LEU GLY ASP GLU GLU THR LEU LYS GLU SEQRES 17 B 372 VAL LYS GLU LYS ALA LYS GLU VAL TYR GLU LYS ALA LYS SEQRES 18 B 372 LYS VAL ALA GLU GLU ALA GLU LYS LYS GLY ASP LEU ILE SEQRES 19 B 372 ALA ALA ALA LEU ALA LEU ILE ALA GLN ALA LEU ALA LEU SEQRES 20 B 372 ILE ALA ILE ALA LEU ALA ALA ILE ALA LEU GLY ASP GLU SEQRES 21 B 372 GLU GLU LEU LYS LYS VAL ILE GLU GLU ALA LYS LYS VAL SEQRES 22 B 372 TYR GLU GLU ALA LYS LYS ILE TYR GLU GLU ALA LYS LYS SEQRES 23 B 372 LYS GLY ASP LEU ILE ALA ALA ALA LEU ALA LEU ILE ALA SEQRES 24 B 372 GLN ALA LEU ALA LEU ILE ALA ILE ALA LEU ALA ALA ILE SEQRES 25 B 372 ALA LEU GLY ASP GLU GLU THR LEU GLU GLU ALA ARG LYS SEQRES 26 B 372 GLU ALA GLU GLU VAL LYS LYS GLU ALA GLU GLU LEU ALA SEQRES 27 B 372 LYS GLU ALA GLU GLN LYS GLY ASN GLU ILE ALA ALA ALA SEQRES 28 B 372 LEU ALA GLU ILE ALA ILE ALA LEU ALA GLU ILE ALA ILE SEQRES 29 B 372 ALA LEU VAL GLU ILE ALA LYS LYS HET PEG A 401 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *23(H2 O) HELIX 1 AA1 HIS A -1 ALA A 22 1 24 HELIX 2 AA2 ASP A 27 GLY A 56 1 30 HELIX 3 AA3 ASP A 57 LYS A 83 1 27 HELIX 4 AA4 ASP A 84 GLY A 113 1 30 HELIX 5 AA5 ASP A 114 GLY A 140 1 27 HELIX 6 AA6 ASP A 141 GLY A 170 1 30 HELIX 7 AA7 ASP A 171 GLY A 197 1 27 HELIX 8 AA8 ASP A 198 GLY A 227 1 30 HELIX 9 AA9 ASP A 228 GLY A 254 1 27 HELIX 10 AB1 ASP A 255 GLY A 284 1 30 HELIX 11 AB2 ASP A 285 GLY A 311 1 27 HELIX 12 AB3 ASP A 312 LYS A 340 1 29 HELIX 13 AB4 ASN A 342 LYS A 367 1 26 HELIX 14 AB5 MET B 0 LYS B 26 1 27 HELIX 15 AB6 ASP B 27 LYS B 28 5 2 HELIX 16 AB7 LEU B 30 LEU B 30 5 1 HELIX 17 AB8 ALA B 31 LYS B 55 1 25 HELIX 18 AB9 LEU B 58 LYS B 83 1 26 HELIX 19 AC1 ASP B 84 LYS B 112 1 29 HELIX 20 AC2 LEU B 115 LEU B 139 1 25 HELIX 21 AC3 LYS B 142 LYS B 169 1 28 HELIX 22 AC4 LEU B 172 GLY B 197 1 26 HELIX 23 AC5 ASP B 198 LYS B 226 1 29 HELIX 24 AC6 LEU B 229 GLY B 254 1 26 HELIX 25 AC7 ASP B 255 LYS B 283 1 29 HELIX 26 AC8 ILE B 287 GLY B 311 1 25 HELIX 27 AC9 ASP B 312 LYS B 340 1 29 HELIX 28 AD1 ASN B 342 ALA B 366 1 25 CRYST1 48.207 54.025 74.930 99.40 100.94 105.33 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020744 0.005687 0.005432 0.00000 SCALE2 0.000000 0.019193 0.004442 0.00000 SCALE3 0.000000 0.000000 0.013952 0.00000