HEADER HYDROLASE 22-AUG-23 8QAK TITLE DISPERSIN FROM TERRIBACILLUS SACCHAROPHILUS DISPTS3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 20 CATALYTIC DOMAIN-CONTAINING COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: FAMILY 20 BETA-HEXOSAMINIDASE; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FAMILY 20 BETA-HEXOSAMINIDASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TERRIBACILLUS SACCHAROPHILUS; SOURCE 3 ORGANISM_TAXID: 361277; SOURCE 4 GENE: GZ22_15930; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1423 KEYWDS BIOFILM DEGRADATION, GH20, POLY-N-ACETYLGLUCOSAMINE, ENZYME KEYWDS 2 CATALYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MALES,O.V.MOROZ,E.BLAGOVA,A.MUNCH,G.H.HANSEN,A.H.JOHANSEN, AUTHOR 2 L.H.OSTERGAARD,D.R.SEGURA,A.EDDENDEN,A.V.DUE,M.GUDMAND,J.SALOMON, AUTHOR 3 S.R.SORENSEN,J.L.F.CAIRO,R.A.PACHE,R.M.VEJBORG,G.J.DAVIES,K.S.WILSON REVDAT 2 19-MAR-25 8QAK 1 JRNL REVDAT 1 12-MAR-25 8QAK 0 JRNL AUTH A.MALES,O.V.MOROZ,E.BLAGOVA,A.MUNCH,G.H.HANSEN,A.H.JOHANSEN, JRNL AUTH 2 L.H.OSTERGAARD,D.R.SEGURA,A.EDDENDEN,A.V.DUE,M.GUDMAND, JRNL AUTH 3 J.SALOMON,S.R.SORENSEN,J.P.L.FRANCO CAIRO,M.NITZ,R.A.PACHE, JRNL AUTH 4 R.M.VEJBORG,S.BHOSALE,D.J.VOCADLO,G.J.DAVIES,K.S.WILSON JRNL TITL EXPANSION OF THE DIVERSITY OF DISPERSIN SCAFFOLDS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 81 130 2025 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 40019001 JRNL DOI 10.1107/S205979832500110X REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 54069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.853 REMARK 3 FREE R VALUE TEST SET COUNT : 2624 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3746 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.89600 REMARK 3 B22 (A**2) : 3.17800 REMARK 3 B33 (A**2) : -1.28300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.340 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5324 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4829 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7223 ; 1.914 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11135 ; 0.726 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 643 ;10.859 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ;23.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 890 ;15.497 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 772 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6295 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1253 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1067 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 44 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2664 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 337 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2580 ; 3.321 ; 3.073 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2578 ; 3.318 ; 3.073 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3219 ; 4.355 ; 5.504 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3220 ; 4.358 ; 5.505 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2744 ; 5.006 ; 3.509 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2745 ; 5.005 ; 3.509 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4004 ; 7.278 ; 6.229 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4005 ; 7.277 ; 6.229 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 323 NULL REMARK 3 1 A 3 A 323 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8QAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54127 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 83.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 1.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS B3, 0.09 M HALOGENS, 30% REMARK 280 GLYCEROL/PEG4000 MIX, FROM MICROSEED MATRIX SCREENING, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.47400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.54200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.67600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.54200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.47400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.67600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 GLN B 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 203 CG CD OE1 NE2 REMARK 480 ASP B 2 CB CG OD1 OD2 REMARK 480 GLN B 203 CG CD OE1 NE2 REMARK 480 LYS B 267 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 ASP B 142 O HOH B 624 1.52 REMARK 500 HG1 THR B 182 O HOH B 501 1.54 REMARK 500 OD1 ASP A 26 HH TYR A 76 1.58 REMARK 500 HD2 LYS A 181 O HOH A 645 1.59 REMARK 500 O HOH A 645 O HOH B 501 1.85 REMARK 500 O HOH B 624 O HOH B 670 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD2 LYS B 68 HE21 GLN B 203 1655 1.32 REMARK 500 O HOH A 632 O HOH B 645 2455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 2 CA ASP B 2 CB -0.462 REMARK 500 GLU B 257 CD GLU B 257 OE1 0.075 REMARK 500 LYS B 267 CB LYS B 267 CG -0.227 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 PRO A 91 C - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 PRO A 91 N - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG A 174 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 GLN A 203 CA - CB - CG ANGL. DEV. = -15.1 DEGREES REMARK 500 GLU A 257 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 GLN B 203 CA - CB - CG ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 91 -18.93 -42.77 REMARK 500 ASP A 122 99.67 -65.24 REMARK 500 ASN A 242 114.72 -25.75 REMARK 500 GLU B 118 -12.29 -47.27 REMARK 500 SER B 225 -158.47 -103.86 REMARK 500 ASN B 242 123.14 -39.04 REMARK 500 ASP B 280 118.32 -163.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 90 PRO A 91 -57.51 REMARK 500 TYR A 270 ALA A 271 149.40 REMARK 500 ASN B 194 ASP B 195 -148.37 REMARK 500 TYR B 270 ALA B 271 148.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 174 0.09 SIDE CHAIN REMARK 500 ARG B 80 0.24 SIDE CHAIN REMARK 500 ARG B 174 0.10 SIDE CHAIN REMARK 500 ARG B 207 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 90 -17.70 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8QAK A 1 324 UNP A0A075LPR4_9BACI DBREF2 8QAK A A0A075LPR4 24 347 DBREF1 8QAK B 1 324 UNP A0A075LPR4_9BACI DBREF2 8QAK B A0A075LPR4 24 347 SEQADV 8QAK GLY A 309 UNP A0A075LPR ARG 332 VARIANT SEQADV 8QAK GLY B 309 UNP A0A075LPR ARG 332 VARIANT SEQRES 1 A 324 GLN ASP GLN GLU LYS GLY ILE THR ILE ASP ILE SER ARG SEQRES 2 A 324 LYS TYR TYR SER ILE LYS THR LEU LYS ALA ILE VAL ASP SEQRES 3 A 324 GLU ILE SER ALA ASN GLY GLY ASP TYR LEU GLN LEU HIS SEQRES 4 A 324 PHE SER ASP ASN GLU SER TYR ALA ILE ALA SER GLU PHE SEQRES 5 A 324 LEU GLY GLN ASN SER GLU ASN PRO ASN SER ALA TYR LEU SEQRES 6 A 324 THR LYS LYS GLU LEU LEU SER LEU ILE ALA TYR SER ASN SEQRES 7 A 324 ASP ARG ASN ILE MET VAL ILE PRO ASP ILE ASP LEU PRO SEQRES 8 A 324 ALA HIS SER LYS GLY TRP LEU ASN ILE MET LYS GLU LYS SEQRES 9 A 324 ASP SER GLY LEU TYR THR ASP ILE VAL THR ASP TYR SER SEQRES 10 A 324 GLU ASP THR LEU ASP TYR HIS ASN ASN ALA VAL ALA LEU SEQRES 11 A 324 TYR THR ALA ASN GLN LEU LEU ASP GLU VAL LEU ASP LEU SEQRES 12 A 324 PHE TYR GLN PRO LYS PHE ALA GLY LYS GLN ARG ILE VAL SEQRES 13 A 324 LEU GLY GLY ASP GLU VAL PRO GLY SER GLY ALA HIS GLN SEQRES 14 A 324 THR ASP PHE ILE ARG PHE MET ASN GLN ILE ALA LYS THR SEQRES 15 A 324 ALA LYS ALA SER ASN TYR GLU PRO GLN MET TRP ASN ASP SEQRES 16 A 324 SER ILE THR PRO GLU GLY ILE GLN ASN LEU ASP ARG SER SEQRES 17 A 324 PHE SER ILE LEU TYR TRP LYS GLN SER THR LEU SER ASN SEQRES 18 A 324 GLY ALA GLN SER LEU ASP VAL GLN ASP PHE GLU GLU ASN SEQRES 19 A 324 GLY LEU SER VAL TYR ASN TYR ASN ALA TYR SER LEU TYR SEQRES 20 A 324 PHE LEU PRO SER THR ARG PHE THR GLN GLU ASP ILE THR SEQRES 21 A 324 GLU GLN ILE ASP TYR MET LYS TRP ALA TYR ALA TYR ASN SEQRES 22 A 324 LYS PHE PHE TYR ILE SER ASP TYR TYR LYS GLN VAL ASP SEQRES 23 A 324 THR PRO ASN VAL LYS GLY SER SER LEU VAL PHE TRP GLY SEQRES 24 A 324 GLU HIS ALA ASN ASP LEU SER GLN GLU GLY LEU LEU LYS SEQRES 25 A 324 GLN GLU LYS PRO LEU ILE GLN ASN PHE LEU GLY LEU SEQRES 1 B 324 GLN ASP GLN GLU LYS GLY ILE THR ILE ASP ILE SER ARG SEQRES 2 B 324 LYS TYR TYR SER ILE LYS THR LEU LYS ALA ILE VAL ASP SEQRES 3 B 324 GLU ILE SER ALA ASN GLY GLY ASP TYR LEU GLN LEU HIS SEQRES 4 B 324 PHE SER ASP ASN GLU SER TYR ALA ILE ALA SER GLU PHE SEQRES 5 B 324 LEU GLY GLN ASN SER GLU ASN PRO ASN SER ALA TYR LEU SEQRES 6 B 324 THR LYS LYS GLU LEU LEU SER LEU ILE ALA TYR SER ASN SEQRES 7 B 324 ASP ARG ASN ILE MET VAL ILE PRO ASP ILE ASP LEU PRO SEQRES 8 B 324 ALA HIS SER LYS GLY TRP LEU ASN ILE MET LYS GLU LYS SEQRES 9 B 324 ASP SER GLY LEU TYR THR ASP ILE VAL THR ASP TYR SER SEQRES 10 B 324 GLU ASP THR LEU ASP TYR HIS ASN ASN ALA VAL ALA LEU SEQRES 11 B 324 TYR THR ALA ASN GLN LEU LEU ASP GLU VAL LEU ASP LEU SEQRES 12 B 324 PHE TYR GLN PRO LYS PHE ALA GLY LYS GLN ARG ILE VAL SEQRES 13 B 324 LEU GLY GLY ASP GLU VAL PRO GLY SER GLY ALA HIS GLN SEQRES 14 B 324 THR ASP PHE ILE ARG PHE MET ASN GLN ILE ALA LYS THR SEQRES 15 B 324 ALA LYS ALA SER ASN TYR GLU PRO GLN MET TRP ASN ASP SEQRES 16 B 324 SER ILE THR PRO GLU GLY ILE GLN ASN LEU ASP ARG SER SEQRES 17 B 324 PHE SER ILE LEU TYR TRP LYS GLN SER THR LEU SER ASN SEQRES 18 B 324 GLY ALA GLN SER LEU ASP VAL GLN ASP PHE GLU GLU ASN SEQRES 19 B 324 GLY LEU SER VAL TYR ASN TYR ASN ALA TYR SER LEU TYR SEQRES 20 B 324 PHE LEU PRO SER THR ARG PHE THR GLN GLU ASP ILE THR SEQRES 21 B 324 GLU GLN ILE ASP TYR MET LYS TRP ALA TYR ALA TYR ASN SEQRES 22 B 324 LYS PHE PHE TYR ILE SER ASP TYR TYR LYS GLN VAL ASP SEQRES 23 B 324 THR PRO ASN VAL LYS GLY SER SER LEU VAL PHE TRP GLY SEQRES 24 B 324 GLU HIS ALA ASN ASP LEU SER GLN GLU GLY LEU LEU LYS SEQRES 25 B 324 GLN GLU LYS PRO LEU ILE GLN ASN PHE LEU GLY LEU HET ACT A 401 7 HET ACT B 401 7 HETNAM ACT ACETATE ION FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 HOH *333(H2 O) HELIX 1 AA1 SER A 17 ASN A 31 1 15 HELIX 2 AA2 THR A 66 ARG A 80 1 15 HELIX 3 AA3 SER A 94 ASP A 105 1 12 HELIX 4 AA4 ASP A 105 VAL A 113 1 9 HELIX 5 AA5 ASN A 126 PHE A 144 1 19 HELIX 6 AA6 GLN A 146 ALA A 150 5 5 HELIX 7 AA7 HIS A 168 SER A 186 1 19 HELIX 8 AA8 THR A 198 GLN A 203 1 6 HELIX 9 AA9 ASP A 227 ASN A 234 1 8 HELIX 10 AB1 THR A 255 TYR A 270 1 16 HELIX 11 AB2 SER A 306 LEU A 324 1 19 HELIX 12 AB3 SER B 17 ASN B 31 1 15 HELIX 13 AB4 THR B 66 ARG B 80 1 15 HELIX 14 AB5 SER B 94 ASP B 105 1 12 HELIX 15 AB6 ASP B 105 ILE B 112 1 8 HELIX 16 AB7 ASN B 126 PHE B 144 1 19 HELIX 17 AB8 GLN B 146 ALA B 150 5 5 HELIX 18 AB9 HIS B 168 SER B 186 1 19 HELIX 19 AC1 THR B 198 GLN B 203 1 6 HELIX 20 AC2 ASP B 227 ASN B 234 1 8 HELIX 21 AC3 THR B 255 TYR B 270 1 16 HELIX 22 AC4 SER B 306 LEU B 324 1 19 SHEET 1 AA110 TYR A 247 PHE A 248 0 SHEET 2 AA110 VAL A 290 PHE A 297 1 O VAL A 296 N PHE A 248 SHEET 3 AA110 VAL A 238 ASN A 240 1 N ASN A 240 O GLY A 292 SHEET 4 AA110 SER A 210 TYR A 213 1 N TYR A 213 O TYR A 239 SHEET 5 AA110 GLU A 189 TRP A 193 1 N MET A 192 O LEU A 212 SHEET 6 AA110 ARG A 154 GLY A 158 1 N LEU A 157 O GLN A 191 SHEET 7 AA110 MET A 83 LEU A 90 1 N PRO A 86 O VAL A 156 SHEET 8 AA110 TYR A 35 SER A 41 1 N LEU A 36 O ILE A 85 SHEET 9 AA110 GLU A 4 ASP A 10 1 N ILE A 7 O GLN A 37 SHEET 10 AA110 VAL A 290 PHE A 297 1 O LYS A 291 N GLU A 4 SHEET 1 AA2 2 LYS A 274 PHE A 275 0 SHEET 2 AA2 2 LYS A 283 GLN A 284 -1 O LYS A 283 N PHE A 275 SHEET 1 AA310 TYR B 247 PHE B 248 0 SHEET 2 AA310 VAL B 290 PHE B 297 1 O VAL B 296 N PHE B 248 SHEET 3 AA310 VAL B 238 ASN B 240 1 N VAL B 238 O LYS B 291 SHEET 4 AA310 SER B 210 TYR B 213 1 N TYR B 213 O TYR B 239 SHEET 5 AA310 GLU B 189 TRP B 193 1 N MET B 192 O LEU B 212 SHEET 6 AA310 ARG B 154 GLY B 158 1 N LEU B 157 O GLN B 191 SHEET 7 AA310 MET B 83 LEU B 90 1 N PRO B 86 O VAL B 156 SHEET 8 AA310 TYR B 35 SER B 41 1 N LEU B 36 O ILE B 85 SHEET 9 AA310 GLU B 4 ASP B 10 1 N ILE B 9 O GLN B 37 SHEET 10 AA310 VAL B 290 PHE B 297 1 O LYS B 291 N GLU B 4 SHEET 1 AA4 2 VAL B 113 THR B 114 0 SHEET 2 AA4 2 SER B 117 LEU B 121 -1 O THR B 120 N THR B 114 SHEET 1 AA5 2 LYS B 274 PHE B 275 0 SHEET 2 AA5 2 LYS B 283 GLN B 284 -1 O LYS B 283 N PHE B 275 CISPEP 1 LEU B 90 PRO B 91 0 -9.36 CRYST1 50.948 109.352 131.084 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007629 0.00000