HEADER FLUORESCENT PROTEIN 24-AUG-23 8QBJ TITLE STRUCTURE OF MBAOJIN AT PH 4.6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MBAOJIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: FLUORESCENT PROTEIN,MBAOJIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: 'FLUOROPHORE (CR2) IS FORMED FROM G57Y58G59 RESIDUES COMPND 7 OF THE PEPTIDE.' SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYTAEIS UCHIDAE; SOURCE 3 ORGANISM_TAXID: 1254443; SOURCE 4 GENE: CU17S; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MBAOJIN, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.R.SAMYGINA,A.V.VLASKINA,A.GABDULKHAKOV,O.M.SUBACH,F.V.SUBACH REVDAT 3 24-APR-24 8QBJ 1 JRNL REVDAT 2 06-MAR-24 8QBJ 1 JRNL REVDAT 1 27-DEC-23 8QBJ 0 JRNL AUTH H.ZHANG,G.D.LESNOV,O.M.SUBACH,W.ZHANG,T.P.KUZMICHEVA, JRNL AUTH 2 A.V.VLASKINA,V.R.SAMYGINA,L.CHEN,X.YE,A.Y.NIKOLAEVA, JRNL AUTH 3 A.GABDULKHAKOV,S.PAPADAKI,W.QIN,V.BORSHCHEVSKIY, JRNL AUTH 4 M.M.PERFILOV,A.S.GAVRIKOV,M.DROBIZHEV,A.S.MISHIN, JRNL AUTH 5 K.D.PIATKEVICH,F.V.SUBACH JRNL TITL BRIGHT AND STABLE MONOMERIC GREEN FLUORESCENT PROTEIN JRNL TITL 2 DERIVED FROM STAYGOLD. JRNL REF NAT.METHODS V. 21 657 2024 JRNL REFN ESSN 1548-7105 JRNL PMID 38409224 JRNL DOI 10.1038/S41592-024-02203-Y REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 36375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.009 REMARK 3 FREE R VALUE TEST SET COUNT : 1822 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2001 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 655 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20700 REMARK 3 B22 (A**2) : 2.15200 REMARK 3 B33 (A**2) : -1.94500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.375 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3649 ; 0.017 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3170 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4942 ; 2.273 ; 1.670 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7439 ; 1.463 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 9.264 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;35.652 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 604 ;17.778 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;19.105 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 447 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4090 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 756 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 758 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 80 ; 0.387 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1630 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 465 ; 0.329 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1734 ; 2.401 ; 1.885 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1733 ; 2.397 ; 1.883 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2166 ; 3.319 ; 2.820 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2167 ; 3.320 ; 2.822 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1915 ; 3.062 ; 2.096 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1916 ; 3.061 ; 2.096 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2772 ; 4.455 ; 3.035 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2773 ; 4.455 ; 3.034 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8QBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41116 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, 0.2 M LITHIUM SULFATE, 0.1 M REMARK 280 NA ACETATE PH4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.22350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.21700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.45950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.21700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.22350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.45950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -10 REMARK 465 SER A -9 REMARK 465 MET A -8 REMARK 465 VAL A -7 REMARK 465 SER A -6 REMARK 465 LYS A -5 REMARK 465 GLY A -4 REMARK 465 GLU A -3 REMARK 465 GLU A -2 REMARK 465 LYS A 216 REMARK 465 GLY A 217 REMARK 465 MET A 218 REMARK 465 ASP A 219 REMARK 465 GLU A 220 REMARK 465 LEU A 221 REMARK 465 TYR A 222 REMARK 465 LYS A 223 REMARK 465 ARG C -10 REMARK 465 SER C -9 REMARK 465 MET C -8 REMARK 465 VAL C -7 REMARK 465 SER C -6 REMARK 465 LYS C -5 REMARK 465 GLY C -4 REMARK 465 GLU C -3 REMARK 465 GLU C -2 REMARK 465 GLU C -1 REMARK 465 ASN C 0 REMARK 465 LYS C 216 REMARK 465 GLY C 217 REMARK 465 MET C 218 REMARK 465 ASP C 219 REMARK 465 GLU C 220 REMARK 465 LEU C 221 REMARK 465 TYR C 222 REMARK 465 LYS C 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -1 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 424 O HOH C 501 1.24 REMARK 500 O HOH A 450 O HOH A 470 1.26 REMARK 500 O HOH C 464 O HOH C 565 1.31 REMARK 500 O HOH A 424 O HOH A 528 1.33 REMARK 500 O HOH C 486 O HOH C 567 1.48 REMARK 500 O HOH A 443 O HOH A 461 1.59 REMARK 500 SG CYS A 206 O HOH A 682 1.64 REMARK 500 SG CYS C 206 O HOH C 668 1.64 REMARK 500 O HOH A 422 O HOH A 596 1.75 REMARK 500 O HOH A 543 O HOH A 624 1.79 REMARK 500 O HOH A 604 O HOH A 673 1.81 REMARK 500 O HOH C 612 O HOH C 632 1.82 REMARK 500 O HOH C 560 O HOH C 562 1.84 REMARK 500 O HOH C 566 O HOH C 608 1.84 REMARK 500 O HOH A 461 O HOH A 536 1.84 REMARK 500 O HOH C 443 O HOH C 646 1.85 REMARK 500 O HOH C 489 O HOH C 514 1.96 REMARK 500 O HOH A 479 O HOH C 602 2.00 REMARK 500 O HOH A 627 O HOH A 658 2.01 REMARK 500 O HOH C 496 O HOH C 620 2.04 REMARK 500 O HOH A 503 O HOH A 505 2.05 REMARK 500 O HOH A 735 O HOH A 740 2.08 REMARK 500 O HOH A 606 O HOH C 469 2.11 REMARK 500 O HOH A 547 O HOH A 581 2.11 REMARK 500 O HOH A 715 O HOH C 694 2.11 REMARK 500 OE2 GLU A 31 O HOH A 402 2.12 REMARK 500 O HOH C 541 O HOH C 657 2.12 REMARK 500 O HOH C 582 O HOH C 690 2.15 REMARK 500 OD1 ASN A 104 O HOH A 403 2.15 REMARK 500 O HOH A 458 O HOH A 614 2.16 REMARK 500 O HOH C 591 O HOH C 689 2.16 REMARK 500 NZ LYS A 7 O HOH A 404 2.17 REMARK 500 O HOH C 571 O HOH C 677 2.18 REMARK 500 O HOH C 540 O HOH C 543 2.19 REMARK 500 O SER A 161 NH2 ARG C 142 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 405 O HOH A 617 2454 1.82 REMARK 500 O HOH A 409 O HOH A 557 2454 1.98 REMARK 500 O HOH C 599 O HOH C 664 2554 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 31 CD GLU A 31 OE1 0.067 REMARK 500 GLU A 209 CD GLU A 209 OE1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU C 201 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 91 -158.56 -153.27 REMARK 500 ASP A 143 -126.22 41.73 REMARK 500 ASN A 177 21.82 46.17 REMARK 500 ASP C 91 -154.94 -155.46 REMARK 500 PRO C 134 151.46 -47.44 REMARK 500 LYS C 160 -29.74 -36.39 REMARK 500 PRO C 181 153.31 -48.63 REMARK 500 GLU C 201 55.05 -153.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 201 ARG C 202 126.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 738 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 739 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 740 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 741 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A 742 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 743 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH C 705 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH C 706 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH C 707 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH C 708 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH C 709 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH C 710 DISTANCE = 8.48 ANGSTROMS REMARK 525 HOH C 711 DISTANCE = 8.55 ANGSTROMS REMARK 525 HOH C 712 DISTANCE = 8.57 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QBJ RELATED DB: PDB DBREF1 8QBJ A 1 215 UNP A0A8S0GSD4_9CNID DBREF2 8QBJ A A0A8S0GSD4 1 217 DBREF1 8QBJ C 1 215 UNP A0A8S0GSD4_9CNID DBREF2 8QBJ C A0A8S0GSD4 1 217 SEQADV 8QBJ ARG A -10 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ SER A -9 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ MET A -8 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ VAL A -7 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ SER A -6 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ LYS A -5 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLY A -4 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLU A -3 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLU A -2 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLU A -1 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ ASN A 0 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ THR A 55 UNP A0A8S0GSD SER 55 ENGINEERED MUTATION SEQADV 8QBJ CR2 A 57 UNP A0A8S0GSD GLY 57 CHROMOPHORE SEQADV 8QBJ CR2 A 57 UNP A0A8S0GSD TYR 58 CHROMOPHORE SEQADV 8QBJ CR2 A 57 UNP A0A8S0GSD GLY 59 CHROMOPHORE SEQADV 8QBJ ARG A 73 UNP A0A8S0GSD HIS 75 ENGINEERED MUTATION SEQADV 8QBJ GLY A 78 UNP A0A8S0GSD GLU 80 ENGINEERED MUTATION SEQADV 8QBJ PRO A 138 UNP A0A8S0GSD GLN 140 ENGINEERED MUTATION SEQADV 8QBJ GLN A 139 UNP A0A8S0GSD HIS 141 ENGINEERED MUTATION SEQADV 8QBJ TYR A 163 UNP A0A8S0GSD CYS 165 ENGINEERED MUTATION SEQADV 8QBJ ALA A 166 UNP A0A8S0GSD VAL 168 ENGINEERED MUTATION SEQADV 8QBJ TYR A 169 UNP A0A8S0GSD ASN 171 ENGINEERED MUTATION SEQADV 8QBJ ALA A 199 UNP A0A8S0GSD THR 201 ENGINEERED MUTATION SEQADV 8QBJ LYS A 216 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLY A 217 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ MET A 218 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ ASP A 219 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLU A 220 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ LEU A 221 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ TYR A 222 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ LYS A 223 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ ARG C -10 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ SER C -9 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ MET C -8 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ VAL C -7 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ SER C -6 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ LYS C -5 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLY C -4 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLU C -3 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLU C -2 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLU C -1 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ ASN C 0 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ THR C 55 UNP A0A8S0GSD SER 55 ENGINEERED MUTATION SEQADV 8QBJ CR2 C 57 UNP A0A8S0GSD GLY 57 CHROMOPHORE SEQADV 8QBJ CR2 C 57 UNP A0A8S0GSD TYR 58 CHROMOPHORE SEQADV 8QBJ CR2 C 57 UNP A0A8S0GSD GLY 59 CHROMOPHORE SEQADV 8QBJ ARG C 73 UNP A0A8S0GSD HIS 75 ENGINEERED MUTATION SEQADV 8QBJ GLY C 78 UNP A0A8S0GSD GLU 80 ENGINEERED MUTATION SEQADV 8QBJ PRO C 138 UNP A0A8S0GSD GLN 140 ENGINEERED MUTATION SEQADV 8QBJ GLN C 139 UNP A0A8S0GSD HIS 141 ENGINEERED MUTATION SEQADV 8QBJ TYR C 163 UNP A0A8S0GSD CYS 165 ENGINEERED MUTATION SEQADV 8QBJ ALA C 166 UNP A0A8S0GSD VAL 168 ENGINEERED MUTATION SEQADV 8QBJ TYR C 169 UNP A0A8S0GSD ASN 171 ENGINEERED MUTATION SEQADV 8QBJ ALA C 199 UNP A0A8S0GSD THR 201 ENGINEERED MUTATION SEQADV 8QBJ LYS C 216 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLY C 217 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ MET C 218 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ ASP C 219 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ GLU C 220 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ LEU C 221 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ TYR C 222 UNP A0A8S0GSD EXPRESSION TAG SEQADV 8QBJ LYS C 223 UNP A0A8S0GSD EXPRESSION TAG SEQRES 1 A 234 ARG SER MET VAL SER LYS GLY GLU GLU GLU ASN MET ALA SEQRES 2 A 234 SER THR PRO PHE LYS PHE GLN LEU LYS GLY THR ILE ASN SEQRES 3 A 234 GLY LYS SER PHE THR VAL GLU GLY GLU GLY GLU GLY ASN SEQRES 4 A 234 SER HIS GLU GLY SER HIS LYS GLY LYS TYR VAL CYS THR SEQRES 5 A 234 SER GLY LYS LEU PRO MET SER TRP ALA ALA LEU GLY THR SEQRES 6 A 234 THR PHE CR2 MET LYS TYR TYR THR LYS TYR PRO SER GLY SEQRES 7 A 234 LEU LYS ASN TRP PHE ARG GLU VAL MET PRO GLY GLY PHE SEQRES 8 A 234 THR TYR ASP ARG HIS ILE GLN TYR LYS GLY ASP GLY SER SEQRES 9 A 234 ILE HIS ALA LYS HIS GLN HIS PHE MET LYS ASN GLY THR SEQRES 10 A 234 TYR HIS ASN ILE VAL GLU PHE THR GLY GLN ASP PHE LYS SEQRES 11 A 234 GLU ASN SER PRO VAL LEU THR GLY ASP MET ASN VAL SER SEQRES 12 A 234 LEU PRO ASN GLU VAL PRO GLN ILE PRO ARG ASP ASP GLY SEQRES 13 A 234 VAL GLU CYS PRO VAL THR LEU LEU TYR PRO LEU LEU SER SEQRES 14 A 234 ASP LYS SER LYS TYR VAL GLU ALA HIS GLN TYR THR ILE SEQRES 15 A 234 CYS LYS PRO LEU HIS ASN GLN PRO ALA PRO ASP VAL PRO SEQRES 16 A 234 TYR HIS TRP ILE ARG LYS GLN TYR THR GLN SER LYS ASP SEQRES 17 A 234 ASP ALA GLU GLU ARG ASP HIS ILE CYS GLN SER GLU THR SEQRES 18 A 234 LEU GLU ALA HIS LEU LYS GLY MET ASP GLU LEU TYR LYS SEQRES 1 C 234 ARG SER MET VAL SER LYS GLY GLU GLU GLU ASN MET ALA SEQRES 2 C 234 SER THR PRO PHE LYS PHE GLN LEU LYS GLY THR ILE ASN SEQRES 3 C 234 GLY LYS SER PHE THR VAL GLU GLY GLU GLY GLU GLY ASN SEQRES 4 C 234 SER HIS GLU GLY SER HIS LYS GLY LYS TYR VAL CYS THR SEQRES 5 C 234 SER GLY LYS LEU PRO MET SER TRP ALA ALA LEU GLY THR SEQRES 6 C 234 THR PHE CR2 MET LYS TYR TYR THR LYS TYR PRO SER GLY SEQRES 7 C 234 LEU LYS ASN TRP PHE ARG GLU VAL MET PRO GLY GLY PHE SEQRES 8 C 234 THR TYR ASP ARG HIS ILE GLN TYR LYS GLY ASP GLY SER SEQRES 9 C 234 ILE HIS ALA LYS HIS GLN HIS PHE MET LYS ASN GLY THR SEQRES 10 C 234 TYR HIS ASN ILE VAL GLU PHE THR GLY GLN ASP PHE LYS SEQRES 11 C 234 GLU ASN SER PRO VAL LEU THR GLY ASP MET ASN VAL SER SEQRES 12 C 234 LEU PRO ASN GLU VAL PRO GLN ILE PRO ARG ASP ASP GLY SEQRES 13 C 234 VAL GLU CYS PRO VAL THR LEU LEU TYR PRO LEU LEU SER SEQRES 14 C 234 ASP LYS SER LYS TYR VAL GLU ALA HIS GLN TYR THR ILE SEQRES 15 C 234 CYS LYS PRO LEU HIS ASN GLN PRO ALA PRO ASP VAL PRO SEQRES 16 C 234 TYR HIS TRP ILE ARG LYS GLN TYR THR GLN SER LYS ASP SEQRES 17 C 234 ASP ALA GLU GLU ARG ASP HIS ILE CYS GLN SER GLU THR SEQRES 18 C 234 LEU GLU ALA HIS LEU LYS GLY MET ASP GLU LEU TYR LYS MODRES 8QBJ CR2 A 57 GLY CHROMOPHORE MODRES 8QBJ CR2 A 57 TYR CHROMOPHORE MODRES 8QBJ CR2 A 57 GLY CHROMOPHORE MODRES 8QBJ CR2 C 57 GLY CHROMOPHORE MODRES 8QBJ CR2 C 57 TYR CHROMOPHORE MODRES 8QBJ CR2 C 57 GLY CHROMOPHORE HET CR2 A 57 19 HET CR2 C 57 19 HET CL A 301 1 HET CL C 301 1 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM CL CHLORIDE ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) FORMUL 1 CR2 2(C13 H13 N3 O4) FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *655(H2 O) HELIX 1 AA1 TRP A 49 GLY A 53 5 5 HELIX 2 AA2 MET A 58 THR A 62 5 5 HELIX 3 AA3 ASN A 70 VAL A 75 1 6 HELIX 4 AA4 SER A 122 GLY A 127 1 6 HELIX 5 AA5 SER C 48 GLY C 53 5 6 HELIX 6 AA6 MET C 58 THR C 62 5 5 HELIX 7 AA7 ASN C 70 VAL C 75 1 6 HELIX 8 AA8 SER C 122 GLY C 127 1 6 SHEET 1 AA112 THR A 4 ILE A 14 0 SHEET 2 AA112 LYS A 17 ASN A 28 -1 O GLY A 25 N PHE A 6 SHEET 3 AA112 SER A 33 CYS A 40 -1 O VAL A 39 N GLU A 22 SHEET 4 AA112 HIS A 204 HIS A 214 -1 O GLN A 207 N GLY A 36 SHEET 5 AA112 HIS A 186 SER A 195 -1 N SER A 195 O CYS A 206 SHEET 6 AA112 ASN A 135 ARG A 142 -1 N GLN A 139 O HIS A 186 SHEET 7 AA112 GLY A 145 PRO A 155 -1 O GLU A 147 N ILE A 140 SHEET 8 AA112 TYR A 163 PRO A 174 -1 O GLN A 168 N VAL A 150 SHEET 9 AA112 PHE A 80 TYR A 88 -1 N GLN A 87 O HIS A 167 SHEET 10 AA112 SER A 93 LYS A 103 -1 O ILE A 94 N ILE A 86 SHEET 11 AA112 THR A 106 GLN A 116 -1 O THR A 114 N HIS A 95 SHEET 12 AA112 THR A 4 ILE A 14 1 N THR A 13 O GLY A 115 SHEET 1 AA212 THR C 4 ILE C 14 0 SHEET 2 AA212 LYS C 17 ASN C 28 -1 O VAL C 21 N LEU C 10 SHEET 3 AA212 SER C 33 CYS C 40 -1 O VAL C 39 N GLU C 22 SHEET 4 AA212 HIS C 204 HIS C 214 -1 O ILE C 205 N TYR C 38 SHEET 5 AA212 HIS C 186 SER C 195 -1 N SER C 195 O CYS C 206 SHEET 6 AA212 ASN C 135 ARG C 142 -1 N ASN C 135 O LYS C 190 SHEET 7 AA212 GLY C 145 PRO C 155 -1 O GLU C 147 N ILE C 140 SHEET 8 AA212 TYR C 163 PRO C 174 -1 O ALA C 166 N LEU C 152 SHEET 9 AA212 PHE C 80 TYR C 88 -1 N GLN C 87 O HIS C 167 SHEET 10 AA212 SER C 93 LYS C 103 -1 O ALA C 96 N ARG C 84 SHEET 11 AA212 THR C 106 GLN C 116 -1 O THR C 114 N HIS C 95 SHEET 12 AA212 THR C 4 ILE C 14 1 N THR C 13 O GLY C 115 LINK C PHE A 56 N1 CR2 A 57 1555 1555 1.30 LINK C3 CR2 A 57 N MET A 58 1555 1555 1.28 LINK C PHE C 56 N1 CR2 C 57 1555 1555 1.28 LINK C3 CR2 C 57 N MET C 58 1555 1555 1.26 CISPEP 1 MET A 76 PRO A 77 0 5.87 CISPEP 2 MET C 76 PRO C 77 0 1.38 CRYST1 66.447 78.919 84.434 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011844 0.00000