data_8QBP # _entry.id 8QBP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8QBP pdb_00008qbp 10.2210/pdb8qbp/pdb WWPDB D_1292132990 ? ? BMRB 34850 ? 10.13018/BMR34850 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-12-13 2 'Structure model' 1 1 2023-12-20 3 'Structure model' 1 2 2024-01-03 4 'Structure model' 1 3 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_entry_details 6 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.identifier_ORCID' 8 2 'Structure model' '_citation_author.name' 9 3 'Structure model' '_citation.journal_volume' 10 3 'Structure model' '_citation.page_first' 11 3 'Structure model' '_citation.page_last' 12 4 'Structure model' '_database_2.pdbx_DOI' 13 4 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8QBP _pdbx_database_status.recvd_initial_deposition_date 2023-08-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. NMR structure of Omphalotin A in methanol / water indoleOut conformation. ; _pdbx_database_related.db_id 34850 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email alvar.gossert@biol.ethz.ch _pdbx_contact_author.name_first Alvar _pdbx_contact_author.name_last Gossert _pdbx_contact_author.name_mi Diego _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7732-495X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ruedisser, S.H.' 1 0000-0002-1107-6196 'Matabaro, E.' 2 0000-0001-7261-128X 'Sonderegger, L.' 3 0000-0002-6012-3120 'Guentert, P.' 4 0000-0002-2911-7574 'Kuenzler, M.' 5 0000-0003-1275-0629 'Gossert, A.D.' 6 0000-0001-7732-495X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 145 _citation.language ? _citation.page_first 27601 _citation.page_last 27615 _citation.title 'Conformations of Macrocyclic Peptides Sampled by Nuclear Magnetic Resonance: Models for Cell-Permeability.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.3c09367 _citation.pdbx_database_id_PubMed 38062770 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rudisser, S.H.' 1 ? primary 'Matabaro, E.' 2 ? primary 'Sonderegger, L.' 3 ? primary 'Guntert, P.' 4 ? primary 'Kunzler, M.' 5 ? primary 'Gossert, A.D.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description TRP-MVA-ILE-MVA-MVA-SAR-MVA-IML-SAR-VAL-IML-SAR _entity.formula_weight 1336.746 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'omphalotin A in methanol / water indoleIn conformation' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'W(MVA)I(MVA)(MVA)(SAR)(MVA)(IML)(SAR)V(IML)(SAR)' _entity_poly.pdbx_seq_one_letter_code_can WVIVVGVIGVIG _entity_poly.pdbx_strand_id Z _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 MVA n 1 3 ILE n 1 4 MVA n 1 5 MVA n 1 6 SAR n 1 7 MVA n 1 8 IML n 1 9 SAR n 1 10 VAL n 1 11 IML n 1 12 SAR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 12 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene DSM3398 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Omphalotus olearius' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 72120 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Komagataella pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain GS115 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IML 'L-peptide linking' n N-METHYL-ISOLEUCINE ? 'C7 H15 N O2' 145.199 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 1 1 TRP TRP Z . n A 1 2 MVA 2 2 2 MVA MVA Z . n A 1 3 ILE 3 3 3 ILE ILE Z . n A 1 4 MVA 4 4 4 MVA MVA Z . n A 1 5 MVA 5 5 5 MVA MVA Z . n A 1 6 SAR 6 6 6 SAR SAR Z . n A 1 7 MVA 7 7 7 MVA MVA Z . n A 1 8 IML 8 8 8 IML IML Z . n A 1 9 SAR 9 9 9 SAR SAR Z . n A 1 10 VAL 10 10 10 VAL VAL Z . n A 1 11 IML 11 11 11 IML IML Z . n A 1 12 SAR 12 12 12 SAR SAR Z . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8QBP _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8QBP _struct.title ;Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. NMR structure of Omphalotin A in methanol / water indoleOut conformation. ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8QBP _struct_keywords.text 'cyclic peptide, exact NOEs, cell-permeability, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8QBP _struct_ref.pdbx_db_accession 8QBP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8QBP _struct_ref_seq.pdbx_strand_id Z _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8QBP _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TRP 1 C ? ? ? 1_555 A MVA 2 N ? ? Z TRP 1 Z MVA 2 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale2 covale both ? A TRP 1 N ? ? ? 1_555 A SAR 12 C ? ? Z TRP 1 Z SAR 12 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale3 covale both ? A MVA 2 C ? ? ? 1_555 A ILE 3 N ? ? Z MVA 2 Z ILE 3 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale4 covale both ? A ILE 3 C ? ? ? 1_555 A MVA 4 N ? ? Z ILE 3 Z MVA 4 1_555 ? ? ? ? ? ? ? 1.396 ? ? covale5 covale both ? A MVA 4 C ? ? ? 1_555 A MVA 5 N ? ? Z MVA 4 Z MVA 5 1_555 ? ? ? ? ? ? ? 1.405 ? ? covale6 covale both ? A MVA 5 C ? ? ? 1_555 A SAR 6 N ? ? Z MVA 5 Z SAR 6 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale7 covale both ? A SAR 6 C ? ? ? 1_555 A MVA 7 N ? ? Z SAR 6 Z MVA 7 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale8 covale both ? A MVA 7 C ? ? ? 1_555 A IML 8 N ? ? Z MVA 7 Z IML 8 1_555 ? ? ? ? ? ? ? 1.408 ? ? covale9 covale both ? A IML 8 C ? ? ? 1_555 A SAR 9 N ? ? Z IML 8 Z SAR 9 1_555 ? ? ? ? ? ? ? 1.395 ? ? covale10 covale both ? A SAR 9 C ? ? ? 1_555 A VAL 10 N ? ? Z SAR 9 Z VAL 10 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale11 covale both ? A VAL 10 C ? ? ? 1_555 A IML 11 N ? ? Z VAL 10 Z IML 11 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale12 covale both ? A IML 11 C ? ? ? 1_555 A SAR 12 N ? ? Z IML 11 Z SAR 12 1_555 ? ? ? ? ? ? ? 1.395 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MVA A 2 ? . . . . MVA Z 2 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 2 MVA A 4 ? . . . . MVA Z 4 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 3 MVA A 5 ? . . . . MVA Z 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 4 SAR A 6 ? . . . . SAR Z 6 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 5 MVA A 7 ? . . . . MVA Z 7 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 6 IML A 8 ? . . . . IML Z 8 ? 1_555 . . . . . . . ILE 1 IML Methylation 'Named protein modification' 7 SAR A 9 ? . . . . SAR Z 9 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 8 IML A 11 ? . . . . IML Z 11 ? 1_555 . . . . . . . ILE 1 IML Methylation 'Named protein modification' 9 SAR A 12 ? . . . . SAR Z 12 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 10 TRP A 1 ? SAR A 12 ? TRP Z 1 ? 1_555 SAR Z 12 ? 1_555 N C . . . None 'Non-standard linkage' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 1 1.07 2 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 1 -1.48 3 IML 11 A . ? IML 11 Z SAR 12 A ? SAR 12 Z 1 3.18 4 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 2 -2.46 5 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 2 1.32 6 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 3 -2.16 7 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 3 -3.01 8 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 4 -1.68 9 SAR 6 A . ? SAR 6 Z MVA 7 A ? MVA 7 Z 4 -3.77 10 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 4 -2.65 11 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 5 -3.17 12 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 5 -5.03 13 IML 11 A . ? IML 11 Z SAR 12 A ? SAR 12 Z 5 6.39 14 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 6 1.97 15 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 6 -2.42 16 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 7 -3.55 17 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 7 0.93 18 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 8 -2.12 19 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 8 -8.32 20 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 9 -1.76 21 SAR 6 A . ? SAR 6 Z MVA 7 A ? MVA 7 Z 9 1.28 22 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 9 -1.80 23 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 10 -0.65 24 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 10 -5.09 25 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 11 1.84 26 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 11 1.19 27 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 12 1.72 28 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 12 -2.27 29 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 13 -6.41 30 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 13 -2.49 31 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 14 -4.08 32 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 14 3.81 33 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 15 -3.52 34 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 15 -1.25 35 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 16 -2.10 36 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 16 -2.32 37 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 17 4.14 38 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 17 -2.06 39 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 18 -3.93 40 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 18 3.32 41 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 19 -5.10 42 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 19 1.50 43 TRP 1 A . ? TRP 1 Z MVA 2 A ? MVA 2 Z 20 -4.21 44 VAL 10 A . ? VAL 10 Z IML 11 A ? IML 11 Z 20 3.93 # _pdbx_entry_details.entry_id 8QBP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE Z 3 ? ? 49.85 74.28 2 1 VAL Z 10 ? ? -117.11 -70.50 3 2 ILE Z 3 ? ? 51.26 71.21 4 2 VAL Z 10 ? ? 52.57 95.15 5 3 MVA Z 5 ? ? 70.26 115.85 6 3 IML Z 8 ? ? 50.79 74.47 7 3 VAL Z 10 ? ? 62.82 91.03 8 4 MVA Z 4 ? ? -151.29 61.50 9 4 VAL Z 10 ? ? 12.21 97.63 10 4 IML Z 11 ? ? 31.21 68.92 11 5 IML Z 8 ? ? 54.00 79.96 12 5 VAL Z 10 ? ? 19.45 96.62 13 7 MVA Z 4 ? ? -147.94 54.44 14 8 IML Z 8 ? ? 46.98 71.32 15 9 MVA Z 7 ? ? 67.19 64.35 16 9 IML Z 8 ? ? 51.61 80.42 17 10 IML Z 8 ? ? 44.80 70.89 18 11 ILE Z 3 ? ? 62.32 82.97 19 12 IML Z 8 ? ? 53.27 81.72 20 13 MVA Z 4 ? ? 38.09 62.34 21 13 IML Z 8 ? ? 48.00 75.72 22 13 VAL Z 10 ? ? 55.13 86.97 23 14 MVA Z 4 ? ? -150.77 58.69 24 14 VAL Z 10 ? ? 56.76 97.20 25 15 ILE Z 3 ? ? 38.69 62.71 26 16 MVA Z 4 ? ? -150.90 61.98 27 16 VAL Z 10 ? ? 7.43 97.68 28 16 IML Z 11 ? ? 27.92 73.30 29 17 ILE Z 3 ? ? 66.98 135.70 30 17 IML Z 8 ? ? 48.44 71.97 31 17 VAL Z 10 ? ? 58.41 91.36 32 18 MVA Z 4 ? ? -144.16 49.96 33 18 IML Z 8 ? ? 51.16 73.31 34 19 ILE Z 3 ? ? -55.52 104.72 35 19 MVA Z 4 ? ? 29.31 61.13 36 19 MVA Z 5 ? ? -140.75 59.04 37 19 IML Z 8 ? ? 51.64 76.19 38 20 MVA Z 4 ? ? -140.78 53.75 39 20 IML Z 8 ? ? 70.02 124.80 40 20 VAL Z 10 ? ? -149.26 -58.61 # _pdbx_nmr_ensemble.entry_id 8QBP _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8QBP _pdbx_nmr_representative.conformer_id 13 _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20 uM omphalotin A, methanol/water' _pdbx_nmr_sample_details.solvent_system methanol/water _pdbx_nmr_sample_details.label 'OmpA in methanol/water' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'omphalotin A' _pdbx_nmr_exptl_sample.concentration 20 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units uM _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units bar _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 0 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units M _pdbx_nmr_exptl_sample_conditions.label polar _pdbx_nmr_exptl_sample_conditions.pH_err 3 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err 0.001 _pdbx_nmr_exptl_sample_conditions.temperature_err 0.2 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-13C HSQC' 1 isotropic # _pdbx_nmr_refine.entry_id 8QBP _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 3 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing TopSpin 4.0.7 'Bruker Biospin' 2 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 3 refinement Amber 22 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 4 'peak picking' NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 5 'chemical shift assignment' 'CcpNmr Analysis' ? CCPN # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ILE N N N N 1 ILE CA C N S 2 ILE C C N N 3 ILE O O N N 4 ILE CB C N S 5 ILE CG1 C N N 6 ILE CG2 C N N 7 ILE CD1 C N N 8 ILE OXT O N N 9 ILE H H N N 10 ILE H2 H N N 11 ILE HA H N N 12 ILE HB H N N 13 ILE HG12 H N N 14 ILE HG13 H N N 15 ILE HG21 H N N 16 ILE HG22 H N N 17 ILE HG23 H N N 18 ILE HD11 H N N 19 ILE HD12 H N N 20 ILE HD13 H N N 21 ILE HXT H N N 22 IML N N N N 23 IML CA C N S 24 IML C C N N 25 IML O O N N 26 IML OXT O N N 27 IML CB C N S 28 IML CN C N N 29 IML CG2 C N N 30 IML CG1 C N N 31 IML CD1 C N N 32 IML H H N N 33 IML HA H N N 34 IML HXT H N N 35 IML HB H N N 36 IML HN1 H N N 37 IML HN2 H N N 38 IML HN3 H N N 39 IML HG21 H N N 40 IML HG22 H N N 41 IML HG23 H N N 42 IML HG12 H N N 43 IML HG13 H N N 44 IML HD11 H N N 45 IML HD12 H N N 46 IML HD13 H N N 47 MVA N N N N 48 MVA CN C N N 49 MVA CA C N S 50 MVA CB C N N 51 MVA CG1 C N N 52 MVA CG2 C N N 53 MVA C C N N 54 MVA O O N N 55 MVA OXT O N N 56 MVA H H N N 57 MVA HN1 H N N 58 MVA HN2 H N N 59 MVA HN3 H N N 60 MVA HA H N N 61 MVA HB H N N 62 MVA HG11 H N N 63 MVA HG12 H N N 64 MVA HG13 H N N 65 MVA HG21 H N N 66 MVA HG22 H N N 67 MVA HG23 H N N 68 MVA HXT H N N 69 SAR N N N N 70 SAR CA C N N 71 SAR C C N N 72 SAR O O N N 73 SAR CN C N N 74 SAR OXT O N N 75 SAR H H N N 76 SAR HA2 H N N 77 SAR HA3 H N N 78 SAR HN1 H N N 79 SAR HN2 H N N 80 SAR HN3 H N N 81 SAR HXT H N N 82 TRP N N N N 83 TRP CA C N S 84 TRP C C N N 85 TRP O O N N 86 TRP CB C N N 87 TRP CG C Y N 88 TRP CD1 C Y N 89 TRP CD2 C Y N 90 TRP NE1 N Y N 91 TRP CE2 C Y N 92 TRP CE3 C Y N 93 TRP CZ2 C Y N 94 TRP CZ3 C Y N 95 TRP CH2 C Y N 96 TRP OXT O N N 97 TRP H H N N 98 TRP H2 H N N 99 TRP HA H N N 100 TRP HB2 H N N 101 TRP HB3 H N N 102 TRP HD1 H N N 103 TRP HE1 H N N 104 TRP HE3 H N N 105 TRP HZ2 H N N 106 TRP HZ3 H N N 107 TRP HH2 H N N 108 TRP HXT H N N 109 VAL N N N N 110 VAL CA C N S 111 VAL C C N N 112 VAL O O N N 113 VAL CB C N N 114 VAL CG1 C N N 115 VAL CG2 C N N 116 VAL OXT O N N 117 VAL H H N N 118 VAL H2 H N N 119 VAL HA H N N 120 VAL HB H N N 121 VAL HG11 H N N 122 VAL HG12 H N N 123 VAL HG13 H N N 124 VAL HG21 H N N 125 VAL HG22 H N N 126 VAL HG23 H N N 127 VAL HXT H N N 128 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ILE N CA sing N N 1 ILE N H sing N N 2 ILE N H2 sing N N 3 ILE CA C sing N N 4 ILE CA CB sing N N 5 ILE CA HA sing N N 6 ILE C O doub N N 7 ILE C OXT sing N N 8 ILE CB CG1 sing N N 9 ILE CB CG2 sing N N 10 ILE CB HB sing N N 11 ILE CG1 CD1 sing N N 12 ILE CG1 HG12 sing N N 13 ILE CG1 HG13 sing N N 14 ILE CG2 HG21 sing N N 15 ILE CG2 HG22 sing N N 16 ILE CG2 HG23 sing N N 17 ILE CD1 HD11 sing N N 18 ILE CD1 HD12 sing N N 19 ILE CD1 HD13 sing N N 20 ILE OXT HXT sing N N 21 IML N CA sing N N 22 IML N CN sing N N 23 IML N H sing N N 24 IML CA C sing N N 25 IML CA CB sing N N 26 IML CA HA sing N N 27 IML C O doub N N 28 IML C OXT sing N N 29 IML OXT HXT sing N N 30 IML CB CG2 sing N N 31 IML CB CG1 sing N N 32 IML CB HB sing N N 33 IML CN HN1 sing N N 34 IML CN HN2 sing N N 35 IML CN HN3 sing N N 36 IML CG2 HG21 sing N N 37 IML CG2 HG22 sing N N 38 IML CG2 HG23 sing N N 39 IML CG1 CD1 sing N N 40 IML CG1 HG12 sing N N 41 IML CG1 HG13 sing N N 42 IML CD1 HD11 sing N N 43 IML CD1 HD12 sing N N 44 IML CD1 HD13 sing N N 45 MVA N CN sing N N 46 MVA N CA sing N N 47 MVA N H sing N N 48 MVA CN HN1 sing N N 49 MVA CN HN2 sing N N 50 MVA CN HN3 sing N N 51 MVA CA CB sing N N 52 MVA CA C sing N N 53 MVA CA HA sing N N 54 MVA CB CG1 sing N N 55 MVA CB CG2 sing N N 56 MVA CB HB sing N N 57 MVA CG1 HG11 sing N N 58 MVA CG1 HG12 sing N N 59 MVA CG1 HG13 sing N N 60 MVA CG2 HG21 sing N N 61 MVA CG2 HG22 sing N N 62 MVA CG2 HG23 sing N N 63 MVA C O doub N N 64 MVA C OXT sing N N 65 MVA OXT HXT sing N N 66 SAR N CA sing N N 67 SAR N CN sing N N 68 SAR N H sing N N 69 SAR CA C sing N N 70 SAR CA HA2 sing N N 71 SAR CA HA3 sing N N 72 SAR C O doub N N 73 SAR C OXT sing N N 74 SAR CN HN1 sing N N 75 SAR CN HN2 sing N N 76 SAR CN HN3 sing N N 77 SAR OXT HXT sing N N 78 TRP N CA sing N N 79 TRP N H sing N N 80 TRP N H2 sing N N 81 TRP CA C sing N N 82 TRP CA CB sing N N 83 TRP CA HA sing N N 84 TRP C O doub N N 85 TRP C OXT sing N N 86 TRP CB CG sing N N 87 TRP CB HB2 sing N N 88 TRP CB HB3 sing N N 89 TRP CG CD1 doub Y N 90 TRP CG CD2 sing Y N 91 TRP CD1 NE1 sing Y N 92 TRP CD1 HD1 sing N N 93 TRP CD2 CE2 doub Y N 94 TRP CD2 CE3 sing Y N 95 TRP NE1 CE2 sing Y N 96 TRP NE1 HE1 sing N N 97 TRP CE2 CZ2 sing Y N 98 TRP CE3 CZ3 doub Y N 99 TRP CE3 HE3 sing N N 100 TRP CZ2 CH2 doub Y N 101 TRP CZ2 HZ2 sing N N 102 TRP CZ3 CH2 sing Y N 103 TRP CZ3 HZ3 sing N N 104 TRP CH2 HH2 sing N N 105 TRP OXT HXT sing N N 106 VAL N CA sing N N 107 VAL N H sing N N 108 VAL N H2 sing N N 109 VAL CA C sing N N 110 VAL CA CB sing N N 111 VAL CA HA sing N N 112 VAL C O doub N N 113 VAL C OXT sing N N 114 VAL CB CG1 sing N N 115 VAL CB CG2 sing N N 116 VAL CB HB sing N N 117 VAL CG1 HG11 sing N N 118 VAL CG1 HG12 sing N N 119 VAL CG1 HG13 sing N N 120 VAL CG2 HG21 sing N N 121 VAL CG2 HG22 sing N N 122 VAL CG2 HG23 sing N N 123 VAL OXT HXT sing N N 124 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Swiss National Science Foundation' Switzerland 31003A_173097 1 'Japan Society for the Promotion of Science (JSPS)' Japan 23K05660 2 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III HD' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.details ? # _pdbx_related_exp_data_set.ordinal 1 _pdbx_related_exp_data_set.data_reference 10.3929/ethz-b-000626950 _pdbx_related_exp_data_set.metadata_reference ? _pdbx_related_exp_data_set.data_set_type 'NMR free induction decay data' _pdbx_related_exp_data_set.details ? # _atom_sites.entry_id 8QBP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_