HEADER LIPID BINDING PROTEIN 25-AUG-23 8QBR TITLE CRYO-EM STRUCTURE OF VIPP1 HELICAL FILAMENT WITH LATTICE 1 (VIPP1_L1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED PROTEIN VIPP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VESICLE-INDUCING PROTEIN IN PLASTIDS 1,VIPP1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC PUNCTIFORME; SOURCE 3 ORGANISM_TAXID: 272131; SOURCE 4 GENE: VIPP1, NPUN_R3963; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIPP1/IM30/ESCRT-III, MEMBRANE REMODELING, CRYOELECTRON MICROSCOPY, KEYWDS 2 HELICAL FILAMENT STRUCTURE, LIPID BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.NASKAR,H.H.LOW REVDAT 1 18-SEP-24 8QBR 0 JRNL AUTH S.NASKAR,A.MERINO,J.ESPADAS,J.SINGH,A.ROUX,A.COLOM,H.H.LOW JRNL TITL MECHANISM FOR VIPP1 SPIRAL FORMATION, RING BIOGENESIS AND JRNL TITL 2 MEMBRANE REPAIR. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, UCSF CHIMERAX, RELION, COOT, REMARK 3 ISOLDE, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 91.050 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.740 REMARK 3 NUMBER OF PARTICLES : 43480 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8QBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132987. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : VIPP1_L1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.70 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 750.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 102.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 95-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 95-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.17_B42440. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.823366 0.567510 0.000000 -94.27945 REMARK 350 BIOMT2 2 -0.567510 0.823366 0.000000 179.48760 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -111.48781 REMARK 350 BIOMT1 3 -0.349175 0.937057 0.000000 99.40278 REMARK 350 BIOMT2 3 -0.937057 -0.349175 0.000000 551.43931 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -109.11573 REMARK 350 BIOMT1 4 -0.993967 -0.109681 0.000000 507.39991 REMARK 350 BIOMT2 4 0.109681 -0.993967 0.000000 454.48968 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -106.74365 REMARK 350 BIOMT1 5 -0.136459 -0.990646 0.000000 513.05765 REMARK 350 BIOMT2 5 0.990646 -0.136459 0.000000 35.17015 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -104.37156 REMARK 350 BIOMT1 6 0.927295 -0.374330 0.000000 107.82479 REMARK 350 BIOMT2 6 0.374330 0.927295 0.000000 -72.75212 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -101.99948 REMARK 350 BIOMT1 7 0.589519 0.807755 0.000000 -95.82235 REMARK 350 BIOMT2 7 -0.807755 0.589519 0.000000 293.83856 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -99.62740 REMARK 350 BIOMT1 8 -0.639267 0.768985 0.000000 209.91222 REMARK 350 BIOMT2 8 -0.768985 -0.639267 0.000000 580.87036 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -97.25532 REMARK 350 BIOMT1 9 -0.901853 -0.432043 0.000000 562.93571 REMARK 350 BIOMT2 9 0.432043 -0.901853 0.000000 354.51820 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -94.88324 REMARK 350 BIOMT1 10 0.198638 -0.980073 0.000000 429.68199 REMARK 350 BIOMT2 10 0.980073 0.198638 0.000000 -43.10515 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -92.51116 REMARK 350 BIOMT1 11 0.998904 -0.046803 0.000000 11.55316 REMARK 350 BIOMT2 11 0.046803 0.998904 0.000000 -11.02452 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 -90.13908 REMARK 350 BIOMT1 12 0.289408 0.957206 0.000000 -59.48325 REMARK 350 BIOMT2 12 -0.957206 0.289408 0.000000 402.27284 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 -87.76700 REMARK 350 BIOMT1 13 -0.857505 0.514476 0.000000 323.93848 REMARK 350 BIOMT2 13 -0.514476 -0.857505 0.000000 572.12178 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 -85.39492 REMARK 350 BIOMT1 14 -0.708369 -0.705842 0.000000 582.30777 REMARK 350 BIOMT2 14 0.705842 -0.708369 0.000000 241.80952 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 -83.02284 REMARK 350 BIOMT1 15 0.511408 -0.859338 0.000000 325.12057 REMARK 350 BIOMT2 15 0.859338 0.511408 0.000000 -89.42398 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 -80.65075 REMARK 350 BIOMT1 16 0.958234 0.285985 0.000000 -58.90570 REMARK 350 BIOMT2 16 -0.285985 0.958234 0.000000 79.05362 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 -78.27867 REMARK 350 BIOMT1 17 -0.043233 0.999065 0.000000 10.65324 REMARK 350 BIOMT2 17 -0.999065 -0.043233 0.000000 492.60221 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 -75.90659 REMARK 350 BIOMT1 18 -0.979357 0.202140 0.000000 428.66475 REMARK 350 BIOMT2 18 -0.202140 -0.979357 0.000000 526.17692 REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 -73.53451 REMARK 350 BIOMT1 19 -0.435263 -0.900303 0.000000 563.33862 REMARK 350 BIOMT2 19 0.900303 -0.435263 0.000000 129.03232 REMARK 350 BIOMT3 19 0.000000 0.000000 1.000000 -71.16243 REMARK 350 BIOMT1 20 0.766695 -0.642011 0.000000 211.12631 REMARK 350 BIOMT2 20 0.642011 0.766695 0.000000 -98.58001 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 -68.79035 REMARK 350 BIOMT1 21 0.809856 0.586628 0.000000 -95.63208 REMARK 350 BIOMT2 21 -0.586628 0.809856 0.000000 187.35735 REMARK 350 BIOMT3 21 0.000000 0.000000 1.000000 -66.41827 REMARK 350 BIOMT1 22 -0.371014 0.928627 0.000000 106.70366 REMARK 350 BIOMT2 22 -0.928627 -0.371014 0.000000 554.67347 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 -64.04619 REMARK 350 BIOMT1 23 -0.991127 -0.132918 0.000000 512.31962 REMARK 350 BIOMT2 23 0.132918 -0.991127 0.000000 448.20008 REMARK 350 BIOMT3 23 0.000000 0.000000 1.000000 -61.67411 REMARK 350 BIOMT1 24 -0.113233 -0.993568 0.000000 508.16045 REMARK 350 BIOMT2 24 0.993568 -0.113233 0.000000 28.86300 REMARK 350 BIOMT3 24 0.000000 0.000000 1.000000 -59.30203 REMARK 350 BIOMT1 25 0.935804 -0.352522 0.000000 100.51240 REMARK 350 BIOMT2 25 0.352522 0.935804 0.000000 -69.54407 REMARK 350 BIOMT3 25 0.000000 0.000000 1.000000 -56.92994 REMARK 350 BIOMT1 26 0.570449 0.821333 0.000000 -94.49785 REMARK 350 BIOMT2 26 -0.821333 0.570449 0.000000 301.71310 REMARK 350 BIOMT3 26 0.000000 0.000000 1.000000 -54.55786 REMARK 350 BIOMT1 27 -0.657092 0.753810 0.000000 217.87174 REMARK 350 BIOMT2 27 -0.753810 -0.657092 0.000000 581.50967 REMARK 350 BIOMT3 27 0.000000 0.000000 1.000000 -52.18578 REMARK 350 BIOMT1 28 -0.891493 -0.453035 0.000000 565.50009 REMARK 350 BIOMT2 28 0.453035 -0.891493 0.000000 346.95601 REMARK 350 BIOMT3 28 0.000000 0.000000 1.000000 -49.81370 REMARK 350 BIOMT1 29 0.221525 -0.975155 0.000000 422.97538 REMARK 350 BIOMT2 29 0.975155 0.221525 0.000000 -47.43921 REMARK 350 BIOMT3 29 0.000000 0.000000 1.000000 -47.44162 REMARK 350 BIOMT1 30 0.999726 -0.023408 0.000000 5.71206 REMARK 350 BIOMT2 30 0.023408 0.999726 0.000000 -5.57988 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 -45.06954 REMARK 350 BIOMT1 31 0.266923 0.963718 0.000000 -55.63050 REMARK 350 BIOMT2 31 -0.963718 0.266923 0.000000 409.26705 REMARK 350 BIOMT3 31 0.000000 0.000000 1.000000 -42.69746 REMARK 350 BIOMT1 32 -0.869312 0.494263 0.000000 331.66196 REMARK 350 BIOMT2 32 -0.494263 -0.869312 0.000000 570.09438 REMARK 350 BIOMT3 32 0.000000 0.000000 1.000000 -40.32538 REMARK 350 BIOMT1 33 -0.691653 -0.722230 0.000000 582.22857 REMARK 350 BIOMT2 33 0.722230 -0.691653 0.000000 233.82476 REMARK 350 BIOMT3 33 0.000000 0.000000 1.000000 -37.95330 REMARK 350 BIOMT1 34 0.531383 -0.847131 0.000000 317.35839 REMARK 350 BIOMT2 34 0.847131 0.531383 0.000000 -91.29779 REMARK 350 BIOMT3 34 0.000000 0.000000 1.000000 -35.58122 REMARK 350 BIOMT1 35 0.951277 0.308337 0.000000 -62.61897 REMARK 350 BIOMT2 35 -0.308337 0.951277 0.000000 86.12287 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 -33.20913 REMARK 350 BIOMT1 36 -0.066607 0.997779 0.000000 16.60119 REMARK 350 BIOMT2 36 -0.997779 -0.066607 0.000000 497.92993 REMARK 350 BIOMT3 36 0.000000 0.000000 1.000000 -30.83705 REMARK 350 BIOMT1 37 -0.983820 0.179160 0.000000 435.28408 REMARK 350 BIOMT2 37 -0.179160 -0.983820 0.000000 521.71070 REMARK 350 BIOMT3 37 0.000000 0.000000 1.000000 -28.46497 REMARK 350 BIOMT1 38 -0.414070 -0.910245 0.000000 560.62476 REMARK 350 BIOMT2 38 0.910245 -0.414070 0.000000 121.52249 REMARK 350 BIOMT3 38 0.000000 0.000000 1.000000 -26.09289 REMARK 350 BIOMT1 39 0.781513 -0.623889 0.000000 203.18104 REMARK 350 BIOMT2 39 0.623889 0.781513 0.000000 -97.78295 REMARK 350 BIOMT3 39 0.000000 0.000000 1.000000 -23.72081 REMARK 350 BIOMT1 40 0.795903 0.605424 0.000000 -96.80013 REMARK 350 BIOMT2 40 -0.605424 0.795903 0.000000 195.25661 REMARK 350 BIOMT3 40 0.000000 0.000000 1.000000 -21.34873 REMARK 350 BIOMT1 41 -0.392649 0.919688 0.000000 114.07825 REMARK 350 BIOMT2 41 -0.919688 -0.392649 0.000000 557.73584 REMARK 350 BIOMT3 41 0.000000 0.000000 1.000000 -18.97665 REMARK 350 BIOMT1 42 -0.987744 -0.156081 0.000000 517.09075 REMARK 350 BIOMT2 42 0.156081 -0.987744 0.000000 441.79704 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 -16.60457 REMARK 350 BIOMT1 43 -0.089944 -0.995947 0.000000 503.11695 REMARK 350 BIOMT2 43 0.995947 -0.089944 0.000000 22.67222 REMARK 350 BIOMT3 43 0.000000 0.000000 1.000000 -14.23249 REMARK 350 BIOMT1 44 0.943799 -0.330520 0.000000 93.27711 REMARK 350 BIOMT2 44 0.330520 0.943799 0.000000 -66.16574 REMARK 350 BIOMT3 44 0.000000 0.000000 1.000000 -11.86041 REMARK 350 BIOMT1 45 0.551067 0.834461 0.000000 -92.98939 REMARK 350 BIOMT2 45 -0.834461 0.551067 0.000000 309.55447 REMARK 350 BIOMT3 45 0.000000 0.000000 1.000000 -9.48832 REMARK 350 BIOMT1 46 -0.674557 0.738222 0.000000 225.84404 REMARK 350 BIOMT2 46 -0.738222 -0.674557 0.000000 581.96249 REMARK 350 BIOMT3 46 0.000000 0.000000 1.000000 -7.11624 REMARK 350 BIOMT1 47 -0.880644 -0.473779 0.000000 567.88675 REMARK 350 BIOMT2 47 0.473779 -0.880644 0.000000 339.33588 REMARK 350 BIOMT3 47 0.000000 0.000000 1.000000 -4.74416 REMARK 350 BIOMT1 48 0.244291 -0.969702 0.000000 416.16916 REMARK 350 BIOMT2 48 0.969702 0.244291 0.000000 -51.61509 REMARK 350 BIOMT3 48 0.000000 0.000000 1.000000 -2.37208 REMARK 350 BIOMT1 49 0.244291 0.969702 0.000000 -51.61509 REMARK 350 BIOMT2 49 -0.969702 0.244291 0.000000 416.16916 REMARK 350 BIOMT3 49 0.000000 0.000000 1.000000 2.37208 REMARK 350 BIOMT1 50 -0.880644 0.473779 0.000000 339.33588 REMARK 350 BIOMT2 50 -0.473779 -0.880644 0.000000 567.88675 REMARK 350 BIOMT3 50 0.000000 0.000000 1.000000 4.74416 REMARK 350 BIOMT1 51 -0.674557 -0.738222 0.000000 581.96249 REMARK 350 BIOMT2 51 0.738222 -0.674557 0.000000 225.84404 REMARK 350 BIOMT3 51 0.000000 0.000000 1.000000 7.11624 REMARK 350 BIOMT1 52 0.551067 -0.834461 0.000000 309.55447 REMARK 350 BIOMT2 52 0.834461 0.551067 0.000000 -92.98939 REMARK 350 BIOMT3 52 0.000000 0.000000 1.000000 9.48832 REMARK 350 BIOMT1 53 0.943799 0.330520 0.000000 -66.16574 REMARK 350 BIOMT2 53 -0.330520 0.943799 0.000000 93.27711 REMARK 350 BIOMT3 53 0.000000 0.000000 1.000000 11.86041 REMARK 350 BIOMT1 54 -0.089944 0.995947 0.000000 22.67222 REMARK 350 BIOMT2 54 -0.995947 -0.089944 0.000000 503.11695 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 14.23249 REMARK 350 BIOMT1 55 -0.987744 0.156081 0.000000 441.79704 REMARK 350 BIOMT2 55 -0.156081 -0.987744 0.000000 517.09075 REMARK 350 BIOMT3 55 0.000000 0.000000 1.000000 16.60457 REMARK 350 BIOMT1 56 -0.392649 -0.919688 0.000000 557.73584 REMARK 350 BIOMT2 56 0.919688 -0.392649 0.000000 114.07825 REMARK 350 BIOMT3 56 0.000000 0.000000 1.000000 18.97665 REMARK 350 BIOMT1 57 0.795903 -0.605424 0.000000 195.25661 REMARK 350 BIOMT2 57 0.605424 0.795903 0.000000 -96.80013 REMARK 350 BIOMT3 57 0.000000 0.000000 1.000000 21.34873 REMARK 350 BIOMT1 58 0.781513 0.623889 0.000000 -97.78295 REMARK 350 BIOMT2 58 -0.623889 0.781513 0.000000 203.18104 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 23.72081 REMARK 350 BIOMT1 59 -0.414070 0.910245 0.000000 121.52249 REMARK 350 BIOMT2 59 -0.910245 -0.414070 0.000000 560.62476 REMARK 350 BIOMT3 59 0.000000 0.000000 1.000000 26.09289 REMARK 350 BIOMT1 60 -0.983820 -0.179160 0.000000 521.71070 REMARK 350 BIOMT2 60 0.179160 -0.983820 0.000000 435.28408 REMARK 350 BIOMT3 60 0.000000 0.000000 1.000000 28.46497 REMARK 350 BIOMT1 61 -0.066607 -0.997779 0.000000 497.92993 REMARK 350 BIOMT2 61 0.997779 -0.066607 0.000000 16.60119 REMARK 350 BIOMT3 61 0.000000 0.000000 1.000000 30.83705 REMARK 350 BIOMT1 62 0.951277 -0.308337 0.000000 86.12287 REMARK 350 BIOMT2 62 0.308337 0.951277 0.000000 -62.61897 REMARK 350 BIOMT3 62 0.000000 0.000000 1.000000 33.20913 REMARK 350 BIOMT1 63 0.531383 0.847131 0.000000 -91.29779 REMARK 350 BIOMT2 63 -0.847131 0.531383 0.000000 317.35839 REMARK 350 BIOMT3 63 0.000000 0.000000 1.000000 35.58122 REMARK 350 BIOMT1 64 -0.691653 0.722230 0.000000 233.82476 REMARK 350 BIOMT2 64 -0.722230 -0.691653 0.000000 582.22857 REMARK 350 BIOMT3 64 0.000000 0.000000 1.000000 37.95330 REMARK 350 BIOMT1 65 -0.869312 -0.494263 0.000000 570.09438 REMARK 350 BIOMT2 65 0.494263 -0.869312 0.000000 331.66196 REMARK 350 BIOMT3 65 0.000000 0.000000 1.000000 40.32538 REMARK 350 BIOMT1 66 0.266923 -0.963718 0.000000 409.26705 REMARK 350 BIOMT2 66 0.963718 0.266923 0.000000 -55.63050 REMARK 350 BIOMT3 66 0.000000 0.000000 1.000000 42.69746 REMARK 350 BIOMT1 67 0.999726 0.023408 0.000000 -5.57988 REMARK 350 BIOMT2 67 -0.023408 0.999726 0.000000 5.71206 REMARK 350 BIOMT3 67 0.000000 0.000000 1.000000 45.06954 REMARK 350 BIOMT1 68 0.221525 0.975155 0.000000 -47.43921 REMARK 350 BIOMT2 68 -0.975155 0.221525 0.000000 422.97538 REMARK 350 BIOMT3 68 0.000000 0.000000 1.000000 47.44162 REMARK 350 BIOMT1 69 -0.891493 0.453035 0.000000 346.95601 REMARK 350 BIOMT2 69 -0.453035 -0.891493 0.000000 565.50009 REMARK 350 BIOMT3 69 0.000000 0.000000 1.000000 49.81370 REMARK 350 BIOMT1 70 -0.657092 -0.753810 0.000000 581.50967 REMARK 350 BIOMT2 70 0.753810 -0.657092 0.000000 217.87174 REMARK 350 BIOMT3 70 0.000000 0.000000 1.000000 52.18578 REMARK 350 BIOMT1 71 0.570449 -0.821333 0.000000 301.71310 REMARK 350 BIOMT2 71 0.821333 0.570449 0.000000 -94.49785 REMARK 350 BIOMT3 71 0.000000 0.000000 1.000000 54.55786 REMARK 350 BIOMT1 72 0.935804 0.352522 0.000000 -69.54407 REMARK 350 BIOMT2 72 -0.352522 0.935804 0.000000 100.51240 REMARK 350 BIOMT3 72 0.000000 0.000000 1.000000 56.92994 REMARK 350 BIOMT1 73 -0.113233 0.993568 0.000000 28.86300 REMARK 350 BIOMT2 73 -0.993568 -0.113233 0.000000 508.16045 REMARK 350 BIOMT3 73 0.000000 0.000000 1.000000 59.30203 REMARK 350 BIOMT1 74 -0.991127 0.132918 0.000000 448.20008 REMARK 350 BIOMT2 74 -0.132918 -0.991127 0.000000 512.31962 REMARK 350 BIOMT3 74 0.000000 0.000000 1.000000 61.67411 REMARK 350 BIOMT1 75 -0.371014 -0.928627 0.000000 554.67347 REMARK 350 BIOMT2 75 0.928627 -0.371014 0.000000 106.70366 REMARK 350 BIOMT3 75 0.000000 0.000000 1.000000 64.04619 REMARK 350 BIOMT1 76 0.809856 -0.586628 0.000000 187.35735 REMARK 350 BIOMT2 76 0.586628 0.809856 0.000000 -95.63208 REMARK 350 BIOMT3 76 0.000000 0.000000 1.000000 66.41827 REMARK 350 BIOMT1 77 0.766695 0.642011 0.000000 -98.58001 REMARK 350 BIOMT2 77 -0.642011 0.766695 0.000000 211.12631 REMARK 350 BIOMT3 77 0.000000 0.000000 1.000000 68.79035 REMARK 350 BIOMT1 78 -0.435263 0.900303 0.000000 129.03232 REMARK 350 BIOMT2 78 -0.900303 -0.435263 0.000000 563.33862 REMARK 350 BIOMT3 78 0.000000 0.000000 1.000000 71.16243 REMARK 350 BIOMT1 79 -0.979357 -0.202140 0.000000 526.17692 REMARK 350 BIOMT2 79 0.202140 -0.979357 0.000000 428.66475 REMARK 350 BIOMT3 79 0.000000 0.000000 1.000000 73.53451 REMARK 350 BIOMT1 80 -0.043233 -0.999065 0.000000 492.60221 REMARK 350 BIOMT2 80 0.999065 -0.043233 0.000000 10.65324 REMARK 350 BIOMT3 80 0.000000 0.000000 1.000000 75.90659 REMARK 350 BIOMT1 81 0.958234 -0.285985 0.000000 79.05362 REMARK 350 BIOMT2 81 0.285985 0.958234 0.000000 -58.90570 REMARK 350 BIOMT3 81 0.000000 0.000000 1.000000 78.27867 REMARK 350 BIOMT1 82 0.511408 0.859338 0.000000 -89.42398 REMARK 350 BIOMT2 82 -0.859338 0.511408 0.000000 325.12057 REMARK 350 BIOMT3 82 0.000000 0.000000 1.000000 80.65075 REMARK 350 BIOMT1 83 -0.708369 0.705842 0.000000 241.80952 REMARK 350 BIOMT2 83 -0.705842 -0.708369 0.000000 582.30777 REMARK 350 BIOMT3 83 0.000000 0.000000 1.000000 83.02284 REMARK 350 BIOMT1 84 -0.857505 -0.514476 0.000000 572.12178 REMARK 350 BIOMT2 84 0.514476 -0.857505 0.000000 323.93848 REMARK 350 BIOMT3 84 0.000000 0.000000 1.000000 85.39492 REMARK 350 BIOMT1 85 0.289408 -0.957206 0.000000 402.27284 REMARK 350 BIOMT2 85 0.957206 0.289408 0.000000 -59.48325 REMARK 350 BIOMT3 85 0.000000 0.000000 1.000000 87.76700 REMARK 350 BIOMT1 86 0.998904 0.046803 0.000000 -11.02452 REMARK 350 BIOMT2 86 -0.046803 0.998904 0.000000 11.55316 REMARK 350 BIOMT3 86 0.000000 0.000000 1.000000 90.13908 REMARK 350 BIOMT1 87 0.198638 0.980073 0.000000 -43.10515 REMARK 350 BIOMT2 87 -0.980073 0.198638 0.000000 429.68199 REMARK 350 BIOMT3 87 0.000000 0.000000 1.000000 92.51116 REMARK 350 BIOMT1 88 -0.901853 0.432043 0.000000 354.51820 REMARK 350 BIOMT2 88 -0.432043 -0.901853 0.000000 562.93571 REMARK 350 BIOMT3 88 0.000000 0.000000 1.000000 94.88324 REMARK 350 BIOMT1 89 -0.639267 -0.768985 0.000000 580.87036 REMARK 350 BIOMT2 89 0.768985 -0.639267 0.000000 209.91222 REMARK 350 BIOMT3 89 0.000000 0.000000 1.000000 97.25532 REMARK 350 BIOMT1 90 0.589519 -0.807755 0.000000 293.83856 REMARK 350 BIOMT2 90 0.807755 0.589519 0.000000 -95.82235 REMARK 350 BIOMT3 90 0.000000 0.000000 1.000000 99.62740 REMARK 350 BIOMT1 91 0.927295 0.374330 0.000000 -72.75212 REMARK 350 BIOMT2 91 -0.374330 0.927295 0.000000 107.82479 REMARK 350 BIOMT3 91 0.000000 0.000000 1.000000 101.99948 REMARK 350 BIOMT1 92 -0.136459 0.990646 0.000000 35.17015 REMARK 350 BIOMT2 92 -0.990646 -0.136459 0.000000 513.05765 REMARK 350 BIOMT3 92 0.000000 0.000000 1.000000 104.37156 REMARK 350 BIOMT1 93 -0.993967 0.109681 0.000000 454.48968 REMARK 350 BIOMT2 93 -0.109681 -0.993967 0.000000 507.39991 REMARK 350 BIOMT3 93 0.000000 0.000000 1.000000 106.74365 REMARK 350 BIOMT1 94 -0.349175 -0.937057 0.000000 551.43931 REMARK 350 BIOMT2 94 0.937057 -0.349175 0.000000 99.40278 REMARK 350 BIOMT3 94 0.000000 0.000000 1.000000 109.11573 REMARK 350 BIOMT1 95 0.823366 -0.567510 0.000000 179.48760 REMARK 350 BIOMT2 95 0.567510 0.823366 0.000000 -94.27945 REMARK 350 BIOMT3 95 0.000000 0.000000 1.000000 111.48781 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 184 H LEU A 188 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 161 -1.88 60.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 9 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-18318 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF VIPP1 HELICAL FILAMENT WITH LATTICE 1 (VIPP1_ REMARK 900 L1) DBREF 8QBR A 1 214 UNP B2J6D9 VIPP1_NOSP7 1 214 SEQRES 1 A 214 MET GLY LEU PHE ASP ARG ILE LYS ARG VAL VAL SER SER SEQRES 2 A 214 ASN LEU ASN ASP LEU VAL ASN LYS ALA GLU ASP PRO GLU SEQRES 3 A 214 LYS MET LEU GLU GLN ALA ILE LEU GLU MET GLN GLU ASP SEQRES 4 A 214 LEU VAL GLN LEU ARG GLN GLY VAL ALA GLN ALA ILE ALA SEQRES 5 A 214 ALA GLN LYS ARG SER GLU LYS GLN TYR ASN ASP ALA GLN SEQRES 6 A 214 ASN GLU ILE ASN LYS TRP GLN ARG ASN ALA GLN LEU ALA SEQRES 7 A 214 LEU GLN LYS GLY ASP GLU ASN LEU ALA ARG GLN ALA LEU SEQRES 8 A 214 GLU ARG LYS LYS THR TYR THR ASP THR SER ALA ALA LEU SEQRES 9 A 214 LYS ALA SER LEU ASP THR GLN SER THR GLN VAL GLU THR SEQRES 10 A 214 LEU LYS ARG ASN LEU ILE GLN LEU GLU SER LYS ILE SER SEQRES 11 A 214 GLU ALA LYS THR LYS LYS GLU MET LEU LYS ALA ARG ILE SEQRES 12 A 214 THR THR ALA LYS ALA GLN GLU GLN LEU GLN GLY MET VAL SEQRES 13 A 214 ARG GLY MET ASN THR SER SER ALA MET SER ALA PHE GLU SEQRES 14 A 214 ARG MET GLU GLU LYS VAL LEU MET GLN GLU SER ARG ALA SEQRES 15 A 214 GLN ALA LEU GLY GLU LEU ALA GLY ALA ASP LEU GLU THR SEQRES 16 A 214 GLN PHE ALA GLN LEU GLU GLY GLY SER ASP VAL ASP ASP SEQRES 17 A 214 GLU LEU ALA ALA LEU LYS HELIX 1 AA1 MET A 1 ALA A 22 1 22 HELIX 2 AA2 ASP A 24 GLN A 80 1 57 HELIX 3 AA3 ASP A 83 GLU A 150 1 68 HELIX 4 AA4 SER A 162 ALA A 189 1 28 HELIX 5 AA5 ASP A 192 GLU A 201 1 10 HELIX 6 AA6 GLY A 203 LYS A 214 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000