data_8QBV # _entry.id 8QBV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.396 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8QBV pdb_00008qbv 10.2210/pdb8qbv/pdb WWPDB D_1292132991 ? ? EMDB EMD-18321 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-09-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8QBV _pdbx_database_status.recvd_initial_deposition_date 2023-08-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of Vipp1-deltaH6_aa1-219 helical filament with lattice 2 (Vipp1-deltaH6_L2)' _pdbx_database_related.db_id EMD-18321 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email h.low@imperial.ac.uk _pdbx_contact_author.name_first Harry _pdbx_contact_author.name_last Low _pdbx_contact_author.name_mi H _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1226-3217 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Naskar, S.' 1 0000-0003-2896-1340 'Low, H.H.' 2 0000-0002-1226-3217 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Mechanism for Vipp1 spiral formation, ring biogenesis and membrane repair.' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Naskar, S.' 1 0000-0003-2896-1340 primary 'Merino, A.' 2 ? primary 'Espadas, J.' 3 ? primary 'Singh, J.' 4 0000-0003-3970-7938 primary 'Roux, A.' 5 ? primary 'Colom, A.' 6 ? primary 'Low, H.H.' 7 0000-0002-1226-3217 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Membrane-associated protein Vipp1' _entity.formula_weight 24292.504 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation 'Alpha helix 6 (aa220-258) is deleted' _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Vesicle-inducing protein in plastids 1,Vipp1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGLFDRIKRVVSSNLNDLVNKAEDPEKMLEQAILEMQEDLVQLRQGVAQAIAAQKRSEKQYNDAQNEINKWQRNAQLALQ KGDENLARQALERKKTYTDTSAALKASLDTQSTQVETLKRNLIQLESKISEAKTKKEMLKARITTAKAQEQLQGMVRGMN TSSAMSAFERMEEKVLMQESRAQALGELAGADLETQFAQLEGGSDVDDELAALKAQM ; _entity_poly.pdbx_seq_one_letter_code_can ;MGLFDRIKRVVSSNLNDLVNKAEDPEKMLEQAILEMQEDLVQLRQGVAQAIAAQKRSEKQYNDAQNEINKWQRNAQLALQ KGDENLARQALERKKTYTDTSAALKASLDTQSTQVETLKRNLIQLESKISEAKTKKEMLKARITTAKAQEQLQGMVRGMN TSSAMSAFERMEEKVLMQESRAQALGELAGADLETQFAQLEGGSDVDDELAALKAQM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 LEU n 1 4 PHE n 1 5 ASP n 1 6 ARG n 1 7 ILE n 1 8 LYS n 1 9 ARG n 1 10 VAL n 1 11 VAL n 1 12 SER n 1 13 SER n 1 14 ASN n 1 15 LEU n 1 16 ASN n 1 17 ASP n 1 18 LEU n 1 19 VAL n 1 20 ASN n 1 21 LYS n 1 22 ALA n 1 23 GLU n 1 24 ASP n 1 25 PRO n 1 26 GLU n 1 27 LYS n 1 28 MET n 1 29 LEU n 1 30 GLU n 1 31 GLN n 1 32 ALA n 1 33 ILE n 1 34 LEU n 1 35 GLU n 1 36 MET n 1 37 GLN n 1 38 GLU n 1 39 ASP n 1 40 LEU n 1 41 VAL n 1 42 GLN n 1 43 LEU n 1 44 ARG n 1 45 GLN n 1 46 GLY n 1 47 VAL n 1 48 ALA n 1 49 GLN n 1 50 ALA n 1 51 ILE n 1 52 ALA n 1 53 ALA n 1 54 GLN n 1 55 LYS n 1 56 ARG n 1 57 SER n 1 58 GLU n 1 59 LYS n 1 60 GLN n 1 61 TYR n 1 62 ASN n 1 63 ASP n 1 64 ALA n 1 65 GLN n 1 66 ASN n 1 67 GLU n 1 68 ILE n 1 69 ASN n 1 70 LYS n 1 71 TRP n 1 72 GLN n 1 73 ARG n 1 74 ASN n 1 75 ALA n 1 76 GLN n 1 77 LEU n 1 78 ALA n 1 79 LEU n 1 80 GLN n 1 81 LYS n 1 82 GLY n 1 83 ASP n 1 84 GLU n 1 85 ASN n 1 86 LEU n 1 87 ALA n 1 88 ARG n 1 89 GLN n 1 90 ALA n 1 91 LEU n 1 92 GLU n 1 93 ARG n 1 94 LYS n 1 95 LYS n 1 96 THR n 1 97 TYR n 1 98 THR n 1 99 ASP n 1 100 THR n 1 101 SER n 1 102 ALA n 1 103 ALA n 1 104 LEU n 1 105 LYS n 1 106 ALA n 1 107 SER n 1 108 LEU n 1 109 ASP n 1 110 THR n 1 111 GLN n 1 112 SER n 1 113 THR n 1 114 GLN n 1 115 VAL n 1 116 GLU n 1 117 THR n 1 118 LEU n 1 119 LYS n 1 120 ARG n 1 121 ASN n 1 122 LEU n 1 123 ILE n 1 124 GLN n 1 125 LEU n 1 126 GLU n 1 127 SER n 1 128 LYS n 1 129 ILE n 1 130 SER n 1 131 GLU n 1 132 ALA n 1 133 LYS n 1 134 THR n 1 135 LYS n 1 136 LYS n 1 137 GLU n 1 138 MET n 1 139 LEU n 1 140 LYS n 1 141 ALA n 1 142 ARG n 1 143 ILE n 1 144 THR n 1 145 THR n 1 146 ALA n 1 147 LYS n 1 148 ALA n 1 149 GLN n 1 150 GLU n 1 151 GLN n 1 152 LEU n 1 153 GLN n 1 154 GLY n 1 155 MET n 1 156 VAL n 1 157 ARG n 1 158 GLY n 1 159 MET n 1 160 ASN n 1 161 THR n 1 162 SER n 1 163 SER n 1 164 ALA n 1 165 MET n 1 166 SER n 1 167 ALA n 1 168 PHE n 1 169 GLU n 1 170 ARG n 1 171 MET n 1 172 GLU n 1 173 GLU n 1 174 LYS n 1 175 VAL n 1 176 LEU n 1 177 MET n 1 178 GLN n 1 179 GLU n 1 180 SER n 1 181 ARG n 1 182 ALA n 1 183 GLN n 1 184 ALA n 1 185 LEU n 1 186 GLY n 1 187 GLU n 1 188 LEU n 1 189 ALA n 1 190 GLY n 1 191 ALA n 1 192 ASP n 1 193 LEU n 1 194 GLU n 1 195 THR n 1 196 GLN n 1 197 PHE n 1 198 ALA n 1 199 GLN n 1 200 LEU n 1 201 GLU n 1 202 GLY n 1 203 GLY n 1 204 SER n 1 205 ASP n 1 206 VAL n 1 207 ASP n 1 208 ASP n 1 209 GLU n 1 210 LEU n 1 211 ALA n 1 212 ALA n 1 213 LEU n 1 214 LYS n 1 215 ALA n 1 216 GLN n 1 217 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 217 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'vipp1, Npun_R3963' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 29133 / PCC 73102' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nostoc punctiforme' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272131 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 MET 28 28 28 MET MET A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 TRP 71 71 71 TRP TRP A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 GLN 124 124 124 GLN GLN A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 MET 138 138 138 MET MET A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 GLN 149 149 149 GLN GLN A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 GLN 151 151 151 GLN GLN A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 MET 155 155 155 MET MET A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 MET 159 159 159 MET MET A . n A 1 160 ASN 160 160 160 ASN ASN A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 SER 163 163 163 SER SER A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 MET 165 165 165 MET MET A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 ARG 170 170 170 ARG ARG A . n A 1 171 MET 171 171 171 MET MET A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 MET 177 177 177 MET MET A . n A 1 178 GLN 178 178 178 GLN GLN A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 ARG 181 181 181 ARG ARG A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 GLN 183 183 183 GLN GLN A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 GLU 187 187 187 GLU GLU A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 GLY 190 190 190 GLY GLY A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 ASP 192 192 192 ASP ASP A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 GLN 196 196 196 GLN GLN A . n A 1 197 PHE 197 197 197 PHE PHE A . n A 1 198 ALA 198 198 198 ALA ALA A . n A 1 199 GLN 199 199 199 GLN GLN A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 GLY 202 202 202 GLY GLY A . n A 1 203 GLY 203 203 203 GLY GLY A . n A 1 204 SER 204 204 204 SER SER A . n A 1 205 ASP 205 205 205 ASP ASP A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 ASP 207 207 207 ASP ASP A . n A 1 208 ASP 208 208 208 ASP ASP A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 ALA 215 215 215 ALA ALA A . n A 1 216 GLN 216 216 216 GLN GLN A . n A 1 217 MET 217 217 217 MET MET A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8QBV _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8QBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8QBV _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8QBV _struct.title 'Cryo-EM structure of Vipp1-deltaH6_aa1-219 helical filament with lattice 2 (Vipp1-deltaH6_L2)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8QBV _struct_keywords.text 'Vipp1/IM30/ESCRT-III, Membrane remodeling, Cryoelectron microscopy, Helical filament structure, LIPID BINDING PROTEIN' _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VIPP1_NOSP7 _struct_ref.pdbx_db_accession B2J6D9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGLFDRIKRVVSSNLNDLVNKAEDPEKMLEQAILEMQEDLVQLRQGVAQAIAAQKRSEKQYNDAQNEINKWQRNAQLALQ KGDENLARQALERKKTYTDTSAALKASLDTQSTQVETLKRNLIQLESKISEAKTKKEMLKARITTAKAQEQLQGMVRGMN TSSAMSAFERMEEKVLMQESRAQALGELAGADLETQFAQLEGGSDVDDELAALKAQM ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8QBV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 217 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B2J6D9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 217 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 217 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details 'UCSF CHIMERA 1.17_b42440.' _pdbx_struct_assembly.oligomeric_details 105-meric _pdbx_struct_assembly.oligomeric_count 105 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105 ; _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 2 'point symmetry operation' ? ? 0.792007 -0.610512 0.0 202.58000 0.610512 0.792007 0.0 -99.62346 -0.0 0.0 1.0 -112.08236 3 'point symmetry operation' ? ? -0.277880 -0.960616 0.0 554.02771 0.960616 -0.277880 0.0 78.52290 0.0 0.0 1.0 -109.92693 4 'point symmetry operation' ? ? -0.995629 -0.093398 0.0 517.03406 0.093398 -0.995629 0.0 470.80224 0.0 0.0 1.0 -107.77150 5 'point symmetry operation' ? ? -0.451686 0.892177 0.0 138.47854 -0.892177 -0.451686 0.0 580.10611 0.0 0.0 1.0 -105.61607 6 'point symmetry operation' ? ? 0.664647 0.747157 0.0 -101.92162 -0.747157 0.664647 0.0 267.92127 0.0 -0.0 1.0 -103.46064 7 'point symmetry operation' ? ? 0.938719 -0.344683 0.0 100.47605 0.344683 0.938719 0.0 -70.14203 -0.0 0.0 1.0 -101.30521 8 'point symmetry operation' ? ? 0.023217 -0.999730 0.0 489.18701 0.999730 0.023217 0.0 -5.67956 -0.0 0.0 1.0 -99.14978 9 'point symmetry operation' ? ? -0.921706 -0.387889 0.0 571.62474 0.387889 -0.921706 0.0 379.61985 0.0 0.0 1.0 -96.99435 10 'point symmetry operation' ? ? -0.698615 0.715498 0.0 243.32162 -0.715498 -0.698615 0.0 597.49292 0.0 0.0 1.0 -94.83892 11 'point symmetry operation' ? ? 0.409783 0.912183 0.0 -79.68653 -0.912183 0.409783 0.0 371.84418 0.0 -0.0 1.0 -92.68349 12 'point symmetry operation' ? ? 0.998891 -0.047078 0.0 11.92617 0.047078 0.998891 0.0 -11.37733 -0.0 0.0 1.0 -90.52806 13 'point symmetry operation' ? ? 0.322174 -0.946680 0.0 402.06529 0.946680 0.322174 0.0 -66.54151 -0.0 0.0 1.0 -88.37263 14 'point symmetry operation' ? ? -0.762812 -0.646620 0.0 596.33451 0.646620 -0.762812 0.0 276.25739 0.0 0.0 1.0 -86.21720 15 'point symmetry operation' ? ? -0.881139 0.472857 0.0 348.54989 -0.472857 -0.881139 0.0 582.61404 0.0 0.0 1.0 -84.06177 16 'point symmetry operation' ? ? 0.117140 0.993115 0.0 -27.28826 -0.993115 0.117140 0.0 464.30386 0.0 -0.0 1.0 -81.90634 17 'point symmetry operation' ? ? 0.966976 0.254867 0.0 -54.90626 -0.254867 0.966976 0.0 71.25315 0.0 -0.0 1.0 -79.75091 18 'point symmetry operation' ? ? 0.591430 -0.806356 0.0 300.69427 0.806356 0.591430 0.0 -98.45212 -0.0 0.0 1.0 -77.59548 19 'point symmetry operation' ? ? -0.533594 -0.845741 0.0 588.88538 0.845741 -0.533594 0.0 170.24379 0.0 0.0 1.0 -75.44005 20 'point symmetry operation' ? ? -0.982431 0.186624 0.0 444.46243 -0.186624 -0.982431 0.0 536.84115 0.0 0.0 1.0 -73.28462 21 'point symmetry operation' ? ? -0.186301 0.982493 0.0 50.44262 -0.982493 -0.186301 0.0 536.77649 0.0 0.0 1.0 -71.12919 22 'point symmetry operation' ? ? 0.845916 0.533317 0.0 -93.86001 -0.533317 0.845916 0.0 170.13175 0.0 -0.0 1.0 -68.97376 23 'point symmetry operation' ? ? 0.806162 -0.591695 0.0 194.41929 0.591695 0.806162 0.0 -98.46956 -0.0 0.0 1.0 -66.81833 24 'point symmetry operation' ? ? -0.255185 -0.966892 0.0 549.96410 0.966892 -0.255185 0.0 71.35242 0.0 0.0 1.0 -64.66290 25 'point symmetry operation' ? ? -0.993154 -0.116814 0.0 522.21708 0.116814 -0.993154 0.0 464.39404 0.0 0.0 1.0 -62.50747 26 'point symmetry operation' ? ? -0.472568 0.881294 0.0 146.34012 -0.881294 -0.472568 0.0 582.58085 0.0 0.0 1.0 -60.35204 27 'point symmetry operation' ? ? 0.646871 0.762600 0.0 -101.34393 -0.762600 0.646871 0.0 276.14289 0.0 -0.0 1.0 -58.19661 28 'point symmetry operation' ? ? 0.946575 -0.322485 0.0 93.03780 0.322485 0.946575 0.0 -66.59223 -0.0 0.0 1.0 -56.04118 29 'point symmetry operation' ? ? 0.046750 -0.998907 0.0 483.15878 0.998907 0.046750 0.0 -11.30000 -0.0 0.0 1.0 -53.88575 30 'point symmetry operation' ? ? -0.912318 -0.409483 0.0 574.64570 0.409483 -0.912318 0.0 371.95156 0.0 0.0 1.0 -51.73032 31 'point symmetry operation' ? ? -0.715268 0.698850 0.0 251.56351 -0.698850 -0.715268 0.0 597.49427 0.0 0.0 1.0 -49.57489 32 'point symmetry operation' ? ? 0.388191 0.921579 0.0 -76.66809 -0.921579 0.388191 0.0 379.51345 0.0 -0.0 1.0 -47.41946 33 'point symmetry operation' ? ? 0.999723 -0.023545 0.0 5.89611 0.023545 0.999723 0.0 -5.75888 -0.0 0.0 1.0 -45.26403 34 'point symmetry operation' ? ? 0.344375 -0.938832 0.0 394.62820 0.938832 0.344375 0.0 -70.09376 -0.0 0.0 1.0 -43.10860 35 'point symmetry operation' ? ? -0.747375 -0.664402 0.0 596.91490 0.664402 -0.747375 0.0 268.03596 0.0 0.0 1.0 -40.95317 36 'point symmetry operation' ? ? -0.892029 0.451979 0.0 356.41228 -0.451979 -0.892029 0.0 580.14187 0.0 0.0 1.0 -38.79774 37 'point symmetry operation' ? ? 0.093724 0.995598 0.0 -22.10734 -0.995598 0.093724 0.0 470.71376 0.0 -0.0 1.0 -36.64231 38 'point symmetry operation' ? ? 0.960707 0.277565 0.0 -58.97223 -0.277565 0.960707 0.0 78.42229 0.0 -0.0 1.0 -34.48688 39 'point symmetry operation' ? ? 0.610252 -0.792207 0.0 292.53393 0.792207 0.610252 0.0 -99.60869 -0.0 0.0 1.0 -32.33145 40 'point symmetry operation' ? ? -0.513533 -0.858070 0.0 586.97171 0.858070 -0.513533 0.0 162.22715 0.0 0.0 1.0 -30.17602 41 'point symmetry operation' ? ? -0.986553 0.163440 0.0 451.22048 -0.163440 -0.986553 0.0 532.12338 0.0 0.0 1.0 -28.02059 42 'point symmetry operation' ? ? -0.209383 0.977834 0.0 57.30838 -0.977834 -0.209383 0.0 541.33609 0.0 0.0 1.0 -25.86516 43 'point symmetry operation' ? ? 0.833124 0.553086 0.0 -95.58704 -0.553086 0.833124 0.0 178.19066 0.0 -0.0 1.0 -23.70973 44 'point symmetry operation' ? ? 0.819870 -0.572549 0.0 186.28800 0.572549 0.819870 0.0 -97.12384 -0.0 0.0 1.0 -21.55430 45 'point symmetry operation' ? ? -0.232348 -0.972633 0.0 545.73277 0.972633 -0.232348 0.0 64.27961 0.0 0.0 1.0 -19.39887 46 'point symmetry operation' ? ? -0.990128 -0.140166 0.0 527.24778 0.140166 -0.990128 0.0 457.86558 0.0 0.0 1.0 -17.24344 47 'point symmetry operation' ? ? -0.493187 0.869923 0.0 154.25778 -0.869923 -0.493187 0.0 584.86981 0.0 0.0 1.0 -15.08801 48 'point symmetry operation' ? ? 0.628736 0.777619 0.0 -100.57281 -0.777619 0.628736 0.0 284.34862 0.0 -0.0 1.0 -12.93258 49 'point symmetry operation' ? ? 0.953905 -0.300108 0.0 85.68519 0.300108 0.953905 0.0 -62.86827 -0.0 0.0 1.0 -10.77715 50 'point symmetry operation' ? ? 0.070257 -0.997529 0.0 476.99990 0.997529 0.070257 0.0 -16.77693 -0.0 0.0 1.0 -8.62172 51 'point symmetry operation' ? ? -0.902423 -0.430850 0.0 577.48527 0.430850 -0.902423 0.0 364.21428 0.0 0.0 1.0 -6.46629 52 'point symmetry operation' ? ? -0.731525 0.681815 0.0 259.80314 -0.681815 -0.731525 0.0 597.30156 0.0 0.0 1.0 -4.31086 53 'point symmetry operation' ? ? 0.366385 0.930464 0.0 -73.46990 -0.930464 0.366385 0.0 387.10953 0.0 -0.0 1.0 -2.15543 54 'point symmetry operation' ? ? 0.366385 -0.930464 0.0 387.10953 0.930464 0.366385 0.0 -73.46990 -0.0 0.0 1.0 2.15543 55 'point symmetry operation' ? ? -0.731525 -0.681815 0.0 597.30156 0.681815 -0.731525 0.0 259.80314 0.0 0.0 1.0 4.31086 56 'point symmetry operation' ? ? -0.902423 0.430850 0.0 364.21428 -0.430850 -0.902423 0.0 577.48527 0.0 0.0 1.0 6.46629 57 'point symmetry operation' ? ? 0.070257 0.997529 0.0 -16.77693 -0.997529 0.070257 0.0 476.99990 0.0 -0.0 1.0 8.62172 58 'point symmetry operation' ? ? 0.953905 0.300108 0.0 -62.86827 -0.300108 0.953905 0.0 85.68519 0.0 -0.0 1.0 10.77715 59 'point symmetry operation' ? ? 0.628736 -0.777619 0.0 284.34862 0.777619 0.628736 0.0 -100.57281 -0.0 0.0 1.0 12.93258 60 'point symmetry operation' ? ? -0.493187 -0.869923 0.0 584.86981 0.869923 -0.493187 0.0 154.25778 0.0 0.0 1.0 15.08801 61 'point symmetry operation' ? ? -0.990128 0.140166 0.0 457.86558 -0.140166 -0.990128 0.0 527.24778 0.0 0.0 1.0 17.24344 62 'point symmetry operation' ? ? -0.232348 0.972633 0.0 64.27961 -0.972633 -0.232348 0.0 545.73277 0.0 0.0 1.0 19.39887 63 'point symmetry operation' ? ? 0.819870 0.572549 0.0 -97.12384 -0.572549 0.819870 0.0 186.28800 0.0 -0.0 1.0 21.55430 64 'point symmetry operation' ? ? 0.833124 -0.553086 0.0 178.19066 0.553086 0.833124 0.0 -95.58704 -0.0 0.0 1.0 23.70973 65 'point symmetry operation' ? ? -0.209383 -0.977834 0.0 541.33609 0.977834 -0.209383 0.0 57.30838 0.0 0.0 1.0 25.86516 66 'point symmetry operation' ? ? -0.986553 -0.163440 0.0 532.12338 0.163440 -0.986553 0.0 451.22048 0.0 0.0 1.0 28.02059 67 'point symmetry operation' ? ? -0.513533 0.858070 0.0 162.22715 -0.858070 -0.513533 0.0 586.97171 0.0 0.0 1.0 30.17602 68 'point symmetry operation' ? ? 0.610252 0.792207 0.0 -99.60869 -0.792207 0.610252 0.0 292.53393 0.0 -0.0 1.0 32.33145 69 'point symmetry operation' ? ? 0.960707 -0.277565 0.0 78.42229 0.277565 0.960707 0.0 -58.97223 -0.0 0.0 1.0 34.48688 70 'point symmetry operation' ? ? 0.093724 -0.995598 0.0 470.71376 0.995598 0.093724 0.0 -22.10734 -0.0 0.0 1.0 36.64231 71 'point symmetry operation' ? ? -0.892029 -0.451979 0.0 580.14187 0.451979 -0.892029 0.0 356.41228 0.0 0.0 1.0 38.79774 72 'point symmetry operation' ? ? -0.747375 0.664402 0.0 268.03596 -0.664402 -0.747375 0.0 596.91490 0.0 0.0 1.0 40.95317 73 'point symmetry operation' ? ? 0.344375 0.938832 0.0 -70.09376 -0.938832 0.344375 0.0 394.62820 0.0 -0.0 1.0 43.10860 74 'point symmetry operation' ? ? 0.999723 0.023545 0.0 -5.75888 -0.023545 0.999723 0.0 5.89611 0.0 -0.0 1.0 45.26403 75 'point symmetry operation' ? ? 0.388191 -0.921579 0.0 379.51345 0.921579 0.388191 0.0 -76.66809 -0.0 0.0 1.0 47.41946 76 'point symmetry operation' ? ? -0.715268 -0.698850 0.0 597.49427 0.698850 -0.715268 0.0 251.56351 0.0 0.0 1.0 49.57489 77 'point symmetry operation' ? ? -0.912318 0.409483 0.0 371.95156 -0.409483 -0.912318 0.0 574.64570 0.0 0.0 1.0 51.73032 78 'point symmetry operation' ? ? 0.046750 0.998907 0.0 -11.30000 -0.998907 0.046750 0.0 483.15878 0.0 -0.0 1.0 53.88575 79 'point symmetry operation' ? ? 0.946575 0.322485 0.0 -66.59223 -0.322485 0.946575 0.0 93.03780 0.0 -0.0 1.0 56.04118 80 'point symmetry operation' ? ? 0.646871 -0.762600 0.0 276.14289 0.762600 0.646871 0.0 -101.34393 -0.0 0.0 1.0 58.19661 81 'point symmetry operation' ? ? -0.472568 -0.881294 0.0 582.58085 0.881294 -0.472568 0.0 146.34012 0.0 0.0 1.0 60.35204 82 'point symmetry operation' ? ? -0.993154 0.116814 0.0 464.39404 -0.116814 -0.993154 0.0 522.21708 0.0 0.0 1.0 62.50747 83 'point symmetry operation' ? ? -0.255185 0.966892 0.0 71.35242 -0.966892 -0.255185 0.0 549.96410 0.0 0.0 1.0 64.66290 84 'point symmetry operation' ? ? 0.806162 0.591695 0.0 -98.46956 -0.591695 0.806162 0.0 194.41929 0.0 -0.0 1.0 66.81833 85 'point symmetry operation' ? ? 0.845916 -0.533317 0.0 170.13175 0.533317 0.845916 0.0 -93.86001 -0.0 0.0 1.0 68.97376 86 'point symmetry operation' ? ? -0.186301 -0.982493 0.0 536.77649 0.982493 -0.186301 0.0 50.44262 0.0 0.0 1.0 71.12919 87 'point symmetry operation' ? ? -0.982431 -0.186624 0.0 536.84115 0.186624 -0.982431 0.0 444.46243 0.0 0.0 1.0 73.28462 88 'point symmetry operation' ? ? -0.533594 0.845741 0.0 170.24379 -0.845741 -0.533594 0.0 588.88538 0.0 0.0 1.0 75.44005 89 'point symmetry operation' ? ? 0.591430 0.806356 0.0 -98.45212 -0.806356 0.591430 0.0 300.69427 0.0 -0.0 1.0 77.59548 90 'point symmetry operation' ? ? 0.966976 -0.254867 0.0 71.25315 0.254867 0.966976 0.0 -54.90626 -0.0 0.0 1.0 79.75091 91 'point symmetry operation' ? ? 0.117140 -0.993115 0.0 464.30386 0.993115 0.117140 0.0 -27.28826 -0.0 0.0 1.0 81.90634 92 'point symmetry operation' ? ? -0.881139 -0.472857 0.0 582.61404 0.472857 -0.881139 0.0 348.54989 0.0 0.0 1.0 84.06177 93 'point symmetry operation' ? ? -0.762812 0.646620 0.0 276.25739 -0.646620 -0.762812 0.0 596.33451 0.0 0.0 1.0 86.21720 94 'point symmetry operation' ? ? 0.322174 0.946680 0.0 -66.54151 -0.946680 0.322174 0.0 402.06529 0.0 -0.0 1.0 88.37263 95 'point symmetry operation' ? ? 0.998891 0.047078 0.0 -11.37733 -0.047078 0.998891 0.0 11.92617 0.0 -0.0 1.0 90.52806 96 'point symmetry operation' ? ? 0.409783 -0.912183 0.0 371.84418 0.912183 0.409783 0.0 -79.68653 -0.0 0.0 1.0 92.68349 97 'point symmetry operation' ? ? -0.698615 -0.715498 0.0 597.49292 0.715498 -0.698615 0.0 243.32162 0.0 0.0 1.0 94.83892 98 'point symmetry operation' ? ? -0.921706 0.387889 0.0 379.61985 -0.387889 -0.921706 0.0 571.62474 0.0 0.0 1.0 96.99435 99 'point symmetry operation' ? ? 0.023217 0.999730 0.0 -5.67956 -0.999730 0.023217 0.0 489.18701 0.0 -0.0 1.0 99.14978 100 'point symmetry operation' ? ? 0.938719 0.344683 0.0 -70.14203 -0.344683 0.938719 0.0 100.47605 0.0 -0.0 1.0 101.30521 101 'point symmetry operation' ? ? 0.664647 -0.747157 0.0 267.92127 0.747157 0.664647 0.0 -101.92162 -0.0 0.0 1.0 103.46064 102 'point symmetry operation' ? ? -0.451686 -0.892177 0.0 580.10611 0.892177 -0.451686 0.0 138.47854 0.0 0.0 1.0 105.61607 103 'point symmetry operation' ? ? -0.995629 0.093398 0.0 470.80224 -0.093398 -0.995629 0.0 517.03406 0.0 0.0 1.0 107.77150 104 'point symmetry operation' ? ? -0.277880 0.960616 0.0 78.52290 -0.960616 -0.277880 0.0 554.02771 0.0 0.0 1.0 109.92693 105 'point symmetry operation' ? ? 0.792007 0.610512 0.0 -99.62346 -0.610512 0.792007 0.0 202.58000 0.0 -0.0 1.0 112.08236 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 MET A 1 ? ALA A 22 ? MET A 1 ALA A 22 1 ? 22 HELX_P HELX_P2 AA2 ASP A 24 ? GLN A 37 ? ASP A 24 GLN A 37 1 ? 14 HELX_P HELX_P3 AA3 GLU A 38 ? LYS A 81 ? GLU A 38 LYS A 81 1 ? 44 HELX_P HELX_P4 AA4 ASP A 83 ? GLN A 153 ? ASP A 83 GLN A 153 1 ? 71 HELX_P HELX_P5 AA5 SER A 162 ? ALA A 189 ? SER A 162 ALA A 189 1 ? 28 HELX_P HELX_P6 AA6 ALA A 191 ? GLN A 216 ? ALA A 191 GLN A 216 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HG3 A GLN 153 ? ? H A GLY 154 ? ? 1.35 2 1 O A LYS 94 ? ? OG1 A THR 98 ? ? 2.17 3 1 O A GLN 124 ? ? OG A SER 127 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 34 ? ? -39.13 -39.97 2 1 ASN A 160 ? ? -142.43 48.43 3 1 ALA A 191 ? ? -143.77 15.31 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 157 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.199 _pdbx_validate_planes.type 'SIDE CHAIN' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8QBV _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 189.95 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8QBV _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.78 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 38361 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name Vipp1-deltaH6_L2 _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8QBV _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 750 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8QBV _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 283.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8QBV _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 ILE N N N N 123 ILE CA C N S 124 ILE C C N N 125 ILE O O N N 126 ILE CB C N S 127 ILE CG1 C N N 128 ILE CG2 C N N 129 ILE CD1 C N N 130 ILE OXT O N N 131 ILE H H N N 132 ILE H2 H N N 133 ILE HA H N N 134 ILE HB H N N 135 ILE HG12 H N N 136 ILE HG13 H N N 137 ILE HG21 H N N 138 ILE HG22 H N N 139 ILE HG23 H N N 140 ILE HD11 H N N 141 ILE HD12 H N N 142 ILE HD13 H N N 143 ILE HXT H N N 144 LEU N N N N 145 LEU CA C N S 146 LEU C C N N 147 LEU O O N N 148 LEU CB C N N 149 LEU CG C N N 150 LEU CD1 C N N 151 LEU CD2 C N N 152 LEU OXT O N N 153 LEU H H N N 154 LEU H2 H N N 155 LEU HA H N N 156 LEU HB2 H N N 157 LEU HB3 H N N 158 LEU HG H N N 159 LEU HD11 H N N 160 LEU HD12 H N N 161 LEU HD13 H N N 162 LEU HD21 H N N 163 LEU HD22 H N N 164 LEU HD23 H N N 165 LEU HXT H N N 166 LYS N N N N 167 LYS CA C N S 168 LYS C C N N 169 LYS O O N N 170 LYS CB C N N 171 LYS CG C N N 172 LYS CD C N N 173 LYS CE C N N 174 LYS NZ N N N 175 LYS OXT O N N 176 LYS H H N N 177 LYS H2 H N N 178 LYS HA H N N 179 LYS HB2 H N N 180 LYS HB3 H N N 181 LYS HG2 H N N 182 LYS HG3 H N N 183 LYS HD2 H N N 184 LYS HD3 H N N 185 LYS HE2 H N N 186 LYS HE3 H N N 187 LYS HZ1 H N N 188 LYS HZ2 H N N 189 LYS HZ3 H N N 190 LYS HXT H N N 191 MET N N N N 192 MET CA C N S 193 MET C C N N 194 MET O O N N 195 MET CB C N N 196 MET CG C N N 197 MET SD S N N 198 MET CE C N N 199 MET OXT O N N 200 MET H H N N 201 MET H2 H N N 202 MET HA H N N 203 MET HB2 H N N 204 MET HB3 H N N 205 MET HG2 H N N 206 MET HG3 H N N 207 MET HE1 H N N 208 MET HE2 H N N 209 MET HE3 H N N 210 MET HXT H N N 211 PHE N N N N 212 PHE CA C N S 213 PHE C C N N 214 PHE O O N N 215 PHE CB C N N 216 PHE CG C Y N 217 PHE CD1 C Y N 218 PHE CD2 C Y N 219 PHE CE1 C Y N 220 PHE CE2 C Y N 221 PHE CZ C Y N 222 PHE OXT O N N 223 PHE H H N N 224 PHE H2 H N N 225 PHE HA H N N 226 PHE HB2 H N N 227 PHE HB3 H N N 228 PHE HD1 H N N 229 PHE HD2 H N N 230 PHE HE1 H N N 231 PHE HE2 H N N 232 PHE HZ H N N 233 PHE HXT H N N 234 PRO N N N N 235 PRO CA C N S 236 PRO C C N N 237 PRO O O N N 238 PRO CB C N N 239 PRO CG C N N 240 PRO CD C N N 241 PRO OXT O N N 242 PRO H H N N 243 PRO HA H N N 244 PRO HB2 H N N 245 PRO HB3 H N N 246 PRO HG2 H N N 247 PRO HG3 H N N 248 PRO HD2 H N N 249 PRO HD3 H N N 250 PRO HXT H N N 251 SER N N N N 252 SER CA C N S 253 SER C C N N 254 SER O O N N 255 SER CB C N N 256 SER OG O N N 257 SER OXT O N N 258 SER H H N N 259 SER H2 H N N 260 SER HA H N N 261 SER HB2 H N N 262 SER HB3 H N N 263 SER HG H N N 264 SER HXT H N N 265 THR N N N N 266 THR CA C N S 267 THR C C N N 268 THR O O N N 269 THR CB C N R 270 THR OG1 O N N 271 THR CG2 C N N 272 THR OXT O N N 273 THR H H N N 274 THR H2 H N N 275 THR HA H N N 276 THR HB H N N 277 THR HG1 H N N 278 THR HG21 H N N 279 THR HG22 H N N 280 THR HG23 H N N 281 THR HXT H N N 282 TRP N N N N 283 TRP CA C N S 284 TRP C C N N 285 TRP O O N N 286 TRP CB C N N 287 TRP CG C Y N 288 TRP CD1 C Y N 289 TRP CD2 C Y N 290 TRP NE1 N Y N 291 TRP CE2 C Y N 292 TRP CE3 C Y N 293 TRP CZ2 C Y N 294 TRP CZ3 C Y N 295 TRP CH2 C Y N 296 TRP OXT O N N 297 TRP H H N N 298 TRP H2 H N N 299 TRP HA H N N 300 TRP HB2 H N N 301 TRP HB3 H N N 302 TRP HD1 H N N 303 TRP HE1 H N N 304 TRP HE3 H N N 305 TRP HZ2 H N N 306 TRP HZ3 H N N 307 TRP HH2 H N N 308 TRP HXT H N N 309 TYR N N N N 310 TYR CA C N S 311 TYR C C N N 312 TYR O O N N 313 TYR CB C N N 314 TYR CG C Y N 315 TYR CD1 C Y N 316 TYR CD2 C Y N 317 TYR CE1 C Y N 318 TYR CE2 C Y N 319 TYR CZ C Y N 320 TYR OH O N N 321 TYR OXT O N N 322 TYR H H N N 323 TYR H2 H N N 324 TYR HA H N N 325 TYR HB2 H N N 326 TYR HB3 H N N 327 TYR HD1 H N N 328 TYR HD2 H N N 329 TYR HE1 H N N 330 TYR HE2 H N N 331 TYR HH H N N 332 TYR HXT H N N 333 VAL N N N N 334 VAL CA C N S 335 VAL C C N N 336 VAL O O N N 337 VAL CB C N N 338 VAL CG1 C N N 339 VAL CG2 C N N 340 VAL OXT O N N 341 VAL H H N N 342 VAL H2 H N N 343 VAL HA H N N 344 VAL HB H N N 345 VAL HG11 H N N 346 VAL HG12 H N N 347 VAL HG13 H N N 348 VAL HG21 H N N 349 VAL HG22 H N N 350 VAL HG23 H N N 351 VAL HXT H N N 352 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 ILE N CA sing N N 116 ILE N H sing N N 117 ILE N H2 sing N N 118 ILE CA C sing N N 119 ILE CA CB sing N N 120 ILE CA HA sing N N 121 ILE C O doub N N 122 ILE C OXT sing N N 123 ILE CB CG1 sing N N 124 ILE CB CG2 sing N N 125 ILE CB HB sing N N 126 ILE CG1 CD1 sing N N 127 ILE CG1 HG12 sing N N 128 ILE CG1 HG13 sing N N 129 ILE CG2 HG21 sing N N 130 ILE CG2 HG22 sing N N 131 ILE CG2 HG23 sing N N 132 ILE CD1 HD11 sing N N 133 ILE CD1 HD12 sing N N 134 ILE CD1 HD13 sing N N 135 ILE OXT HXT sing N N 136 LEU N CA sing N N 137 LEU N H sing N N 138 LEU N H2 sing N N 139 LEU CA C sing N N 140 LEU CA CB sing N N 141 LEU CA HA sing N N 142 LEU C O doub N N 143 LEU C OXT sing N N 144 LEU CB CG sing N N 145 LEU CB HB2 sing N N 146 LEU CB HB3 sing N N 147 LEU CG CD1 sing N N 148 LEU CG CD2 sing N N 149 LEU CG HG sing N N 150 LEU CD1 HD11 sing N N 151 LEU CD1 HD12 sing N N 152 LEU CD1 HD13 sing N N 153 LEU CD2 HD21 sing N N 154 LEU CD2 HD22 sing N N 155 LEU CD2 HD23 sing N N 156 LEU OXT HXT sing N N 157 LYS N CA sing N N 158 LYS N H sing N N 159 LYS N H2 sing N N 160 LYS CA C sing N N 161 LYS CA CB sing N N 162 LYS CA HA sing N N 163 LYS C O doub N N 164 LYS C OXT sing N N 165 LYS CB CG sing N N 166 LYS CB HB2 sing N N 167 LYS CB HB3 sing N N 168 LYS CG CD sing N N 169 LYS CG HG2 sing N N 170 LYS CG HG3 sing N N 171 LYS CD CE sing N N 172 LYS CD HD2 sing N N 173 LYS CD HD3 sing N N 174 LYS CE NZ sing N N 175 LYS CE HE2 sing N N 176 LYS CE HE3 sing N N 177 LYS NZ HZ1 sing N N 178 LYS NZ HZ2 sing N N 179 LYS NZ HZ3 sing N N 180 LYS OXT HXT sing N N 181 MET N CA sing N N 182 MET N H sing N N 183 MET N H2 sing N N 184 MET CA C sing N N 185 MET CA CB sing N N 186 MET CA HA sing N N 187 MET C O doub N N 188 MET C OXT sing N N 189 MET CB CG sing N N 190 MET CB HB2 sing N N 191 MET CB HB3 sing N N 192 MET CG SD sing N N 193 MET CG HG2 sing N N 194 MET CG HG3 sing N N 195 MET SD CE sing N N 196 MET CE HE1 sing N N 197 MET CE HE2 sing N N 198 MET CE HE3 sing N N 199 MET OXT HXT sing N N 200 PHE N CA sing N N 201 PHE N H sing N N 202 PHE N H2 sing N N 203 PHE CA C sing N N 204 PHE CA CB sing N N 205 PHE CA HA sing N N 206 PHE C O doub N N 207 PHE C OXT sing N N 208 PHE CB CG sing N N 209 PHE CB HB2 sing N N 210 PHE CB HB3 sing N N 211 PHE CG CD1 doub Y N 212 PHE CG CD2 sing Y N 213 PHE CD1 CE1 sing Y N 214 PHE CD1 HD1 sing N N 215 PHE CD2 CE2 doub Y N 216 PHE CD2 HD2 sing N N 217 PHE CE1 CZ doub Y N 218 PHE CE1 HE1 sing N N 219 PHE CE2 CZ sing Y N 220 PHE CE2 HE2 sing N N 221 PHE CZ HZ sing N N 222 PHE OXT HXT sing N N 223 PRO N CA sing N N 224 PRO N CD sing N N 225 PRO N H sing N N 226 PRO CA C sing N N 227 PRO CA CB sing N N 228 PRO CA HA sing N N 229 PRO C O doub N N 230 PRO C OXT sing N N 231 PRO CB CG sing N N 232 PRO CB HB2 sing N N 233 PRO CB HB3 sing N N 234 PRO CG CD sing N N 235 PRO CG HG2 sing N N 236 PRO CG HG3 sing N N 237 PRO CD HD2 sing N N 238 PRO CD HD3 sing N N 239 PRO OXT HXT sing N N 240 SER N CA sing N N 241 SER N H sing N N 242 SER N H2 sing N N 243 SER CA C sing N N 244 SER CA CB sing N N 245 SER CA HA sing N N 246 SER C O doub N N 247 SER C OXT sing N N 248 SER CB OG sing N N 249 SER CB HB2 sing N N 250 SER CB HB3 sing N N 251 SER OG HG sing N N 252 SER OXT HXT sing N N 253 THR N CA sing N N 254 THR N H sing N N 255 THR N H2 sing N N 256 THR CA C sing N N 257 THR CA CB sing N N 258 THR CA HA sing N N 259 THR C O doub N N 260 THR C OXT sing N N 261 THR CB OG1 sing N N 262 THR CB CG2 sing N N 263 THR CB HB sing N N 264 THR OG1 HG1 sing N N 265 THR CG2 HG21 sing N N 266 THR CG2 HG22 sing N N 267 THR CG2 HG23 sing N N 268 THR OXT HXT sing N N 269 TRP N CA sing N N 270 TRP N H sing N N 271 TRP N H2 sing N N 272 TRP CA C sing N N 273 TRP CA CB sing N N 274 TRP CA HA sing N N 275 TRP C O doub N N 276 TRP C OXT sing N N 277 TRP CB CG sing N N 278 TRP CB HB2 sing N N 279 TRP CB HB3 sing N N 280 TRP CG CD1 doub Y N 281 TRP CG CD2 sing Y N 282 TRP CD1 NE1 sing Y N 283 TRP CD1 HD1 sing N N 284 TRP CD2 CE2 doub Y N 285 TRP CD2 CE3 sing Y N 286 TRP NE1 CE2 sing Y N 287 TRP NE1 HE1 sing N N 288 TRP CE2 CZ2 sing Y N 289 TRP CE3 CZ3 doub Y N 290 TRP CE3 HE3 sing N N 291 TRP CZ2 CH2 doub Y N 292 TRP CZ2 HZ2 sing N N 293 TRP CZ3 CH2 sing Y N 294 TRP CZ3 HZ3 sing N N 295 TRP CH2 HH2 sing N N 296 TRP OXT HXT sing N N 297 TYR N CA sing N N 298 TYR N H sing N N 299 TYR N H2 sing N N 300 TYR CA C sing N N 301 TYR CA CB sing N N 302 TYR CA HA sing N N 303 TYR C O doub N N 304 TYR C OXT sing N N 305 TYR CB CG sing N N 306 TYR CB HB2 sing N N 307 TYR CB HB3 sing N N 308 TYR CG CD1 doub Y N 309 TYR CG CD2 sing Y N 310 TYR CD1 CE1 sing Y N 311 TYR CD1 HD1 sing N N 312 TYR CD2 CE2 doub Y N 313 TYR CD2 HD2 sing N N 314 TYR CE1 CZ doub Y N 315 TYR CE1 HE1 sing N N 316 TYR CE2 CZ sing Y N 317 TYR CE2 HE2 sing N N 318 TYR CZ OH sing N N 319 TYR OH HH sing N N 320 TYR OXT HXT sing N N 321 VAL N CA sing N N 322 VAL N H sing N N 323 VAL N H2 sing N N 324 VAL CA C sing N N 325 VAL CA CB sing N N 326 VAL CA HA sing N N 327 VAL C O doub N N 328 VAL C OXT sing N N 329 VAL CB CG1 sing N N 330 VAL CB CG2 sing N N 331 VAL CB HB sing N N 332 VAL CG1 HG11 sing N N 333 VAL CG1 HG12 sing N N 334 VAL CG1 HG13 sing N N 335 VAL CG2 HG21 sing N N 336 VAL CG2 HG22 sing N N 337 VAL CG2 HG23 sing N N 338 VAL OXT HXT sing N N 339 # _em_admin.current_status REL _em_admin.deposition_date 2023-08-25 _em_admin.deposition_site PDBE _em_admin.entry_id 8QBV _em_admin.last_update 2024-09-18 _em_admin.map_release_date 2024-09-18 _em_admin.title 'Cryo-EM structure of Vipp1-deltaH6_aa1-219 helical filament with lattice 2 (Vipp1-deltaH6_L2)' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 272131 _em_entity_assembly_naturalsource.organism 'Nostoc punctiforme' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain 'ATCC 29133 / PCC 73102' _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 68.507182 _em_helical_entity.axial_rise_per_subunit 2.155430 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 3 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 1.5 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' CTFFIND-4.1 4 1 ? ? RELION 4 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF ChimeraX' 1.5 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? CLASSIFICATION ? 11 1 ? ? ? ? RECONSTRUCTION ? 12 1 ? ? RELION 4 'VOLUME SELECTION' ? 13 1 1 1 ? ? 'SERIES ALIGNMENT' ? 14 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 15 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 16 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 17 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 18 1 1 1 ? ? 'MODEL REFINEMENT' ? 19 ? 1 ? Coot ? 'MODEL REFINEMENT' ? 20 ? 1 ? ISOLDE ? 'MODEL REFINEMENT' ? 21 ? 1 ? PHENIX ? # _em_specimen.concentration 1.5 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Wellcome Trust' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 215553/Z/19/Z _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8QBV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_