HEADER LIPID BINDING PROTEIN 25-AUG-23 8QBV TITLE CRYO-EM STRUCTURE OF VIPP1-DELTAH6_AA1-219 HELICAL FILAMENT WITH TITLE 2 LATTICE 2 (VIPP1-DELTAH6_L2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED PROTEIN VIPP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VESICLE-INDUCING PROTEIN IN PLASTIDS 1,VIPP1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC PUNCTIFORME; SOURCE 3 ORGANISM_TAXID: 272131; SOURCE 4 STRAIN: ATCC 29133 / PCC 73102; SOURCE 5 GENE: VIPP1, NPUN_R3963; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIPP1/IM30/ESCRT-III, MEMBRANE REMODELING, CRYOELECTRON MICROSCOPY, KEYWDS 2 HELICAL FILAMENT STRUCTURE, LIPID BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.NASKAR,H.H.LOW REVDAT 1 18-SEP-24 8QBV 0 JRNL AUTH S.NASKAR,A.MERINO,J.ESPADAS,J.SINGH,A.ROUX,A.COLOM,H.H.LOW JRNL TITL MECHANISM FOR VIPP1 SPIRAL FORMATION, RING BIOGENESIS AND JRNL TITL 2 MEMBRANE REPAIR. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, UCSF CHIMERAX, RELION, COOT, REMARK 3 ISOLDE, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 189.950 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.780 REMARK 3 NUMBER OF PARTICLES : 38361 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8QBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132991. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : VIPP1-DELTAH6_L2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 750.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 150.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 105-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 105-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.17_B42440. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.792007 -0.610512 0.000000 202.58000 REMARK 350 BIOMT2 2 0.610512 0.792007 0.000000 -99.62346 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -112.08236 REMARK 350 BIOMT1 3 -0.277880 -0.960616 0.000000 554.02771 REMARK 350 BIOMT2 3 0.960616 -0.277880 0.000000 78.52290 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -109.92693 REMARK 350 BIOMT1 4 -0.995629 -0.093398 0.000000 517.03406 REMARK 350 BIOMT2 4 0.093398 -0.995629 0.000000 470.80224 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -107.77150 REMARK 350 BIOMT1 5 -0.451686 0.892177 0.000000 138.47854 REMARK 350 BIOMT2 5 -0.892177 -0.451686 0.000000 580.10611 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -105.61607 REMARK 350 BIOMT1 6 0.664647 0.747157 0.000000 -101.92162 REMARK 350 BIOMT2 6 -0.747157 0.664647 0.000000 267.92127 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -103.46064 REMARK 350 BIOMT1 7 0.938719 -0.344683 0.000000 100.47605 REMARK 350 BIOMT2 7 0.344683 0.938719 0.000000 -70.14203 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -101.30521 REMARK 350 BIOMT1 8 0.023217 -0.999730 0.000000 489.18701 REMARK 350 BIOMT2 8 0.999730 0.023217 0.000000 -5.67956 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -99.14978 REMARK 350 BIOMT1 9 -0.921706 -0.387889 0.000000 571.62474 REMARK 350 BIOMT2 9 0.387889 -0.921706 0.000000 379.61985 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -96.99435 REMARK 350 BIOMT1 10 -0.698615 0.715498 0.000000 243.32162 REMARK 350 BIOMT2 10 -0.715498 -0.698615 0.000000 597.49292 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -94.83892 REMARK 350 BIOMT1 11 0.409783 0.912183 0.000000 -79.68653 REMARK 350 BIOMT2 11 -0.912183 0.409783 0.000000 371.84418 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 -92.68349 REMARK 350 BIOMT1 12 0.998891 -0.047078 0.000000 11.92617 REMARK 350 BIOMT2 12 0.047078 0.998891 0.000000 -11.37733 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 -90.52806 REMARK 350 BIOMT1 13 0.322174 -0.946680 0.000000 402.06529 REMARK 350 BIOMT2 13 0.946680 0.322174 0.000000 -66.54151 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 -88.37263 REMARK 350 BIOMT1 14 -0.762812 -0.646620 0.000000 596.33451 REMARK 350 BIOMT2 14 0.646620 -0.762812 0.000000 276.25739 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 -86.21720 REMARK 350 BIOMT1 15 -0.881139 0.472857 0.000000 348.54989 REMARK 350 BIOMT2 15 -0.472857 -0.881139 0.000000 582.61404 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 -84.06177 REMARK 350 BIOMT1 16 0.117140 0.993115 0.000000 -27.28826 REMARK 350 BIOMT2 16 -0.993115 0.117140 0.000000 464.30386 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 -81.90634 REMARK 350 BIOMT1 17 0.966976 0.254867 0.000000 -54.90626 REMARK 350 BIOMT2 17 -0.254867 0.966976 0.000000 71.25315 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 -79.75091 REMARK 350 BIOMT1 18 0.591430 -0.806356 0.000000 300.69427 REMARK 350 BIOMT2 18 0.806356 0.591430 0.000000 -98.45212 REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 -77.59548 REMARK 350 BIOMT1 19 -0.533594 -0.845741 0.000000 588.88538 REMARK 350 BIOMT2 19 0.845741 -0.533594 0.000000 170.24379 REMARK 350 BIOMT3 19 0.000000 0.000000 1.000000 -75.44005 REMARK 350 BIOMT1 20 -0.982431 0.186624 0.000000 444.46243 REMARK 350 BIOMT2 20 -0.186624 -0.982431 0.000000 536.84115 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 -73.28462 REMARK 350 BIOMT1 21 -0.186301 0.982493 0.000000 50.44262 REMARK 350 BIOMT2 21 -0.982493 -0.186301 0.000000 536.77649 REMARK 350 BIOMT3 21 0.000000 0.000000 1.000000 -71.12919 REMARK 350 BIOMT1 22 0.845916 0.533317 0.000000 -93.86001 REMARK 350 BIOMT2 22 -0.533317 0.845916 0.000000 170.13175 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 -68.97376 REMARK 350 BIOMT1 23 0.806162 -0.591695 0.000000 194.41929 REMARK 350 BIOMT2 23 0.591695 0.806162 0.000000 -98.46956 REMARK 350 BIOMT3 23 0.000000 0.000000 1.000000 -66.81833 REMARK 350 BIOMT1 24 -0.255185 -0.966892 0.000000 549.96410 REMARK 350 BIOMT2 24 0.966892 -0.255185 0.000000 71.35242 REMARK 350 BIOMT3 24 0.000000 0.000000 1.000000 -64.66290 REMARK 350 BIOMT1 25 -0.993154 -0.116814 0.000000 522.21708 REMARK 350 BIOMT2 25 0.116814 -0.993154 0.000000 464.39404 REMARK 350 BIOMT3 25 0.000000 0.000000 1.000000 -62.50747 REMARK 350 BIOMT1 26 -0.472568 0.881294 0.000000 146.34012 REMARK 350 BIOMT2 26 -0.881294 -0.472568 0.000000 582.58085 REMARK 350 BIOMT3 26 0.000000 0.000000 1.000000 -60.35204 REMARK 350 BIOMT1 27 0.646871 0.762600 0.000000 -101.34393 REMARK 350 BIOMT2 27 -0.762600 0.646871 0.000000 276.14289 REMARK 350 BIOMT3 27 0.000000 0.000000 1.000000 -58.19661 REMARK 350 BIOMT1 28 0.946575 -0.322485 0.000000 93.03780 REMARK 350 BIOMT2 28 0.322485 0.946575 0.000000 -66.59223 REMARK 350 BIOMT3 28 0.000000 0.000000 1.000000 -56.04118 REMARK 350 BIOMT1 29 0.046750 -0.998907 0.000000 483.15878 REMARK 350 BIOMT2 29 0.998907 0.046750 0.000000 -11.30000 REMARK 350 BIOMT3 29 0.000000 0.000000 1.000000 -53.88575 REMARK 350 BIOMT1 30 -0.912318 -0.409483 0.000000 574.64570 REMARK 350 BIOMT2 30 0.409483 -0.912318 0.000000 371.95156 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 -51.73032 REMARK 350 BIOMT1 31 -0.715268 0.698850 0.000000 251.56351 REMARK 350 BIOMT2 31 -0.698850 -0.715268 0.000000 597.49427 REMARK 350 BIOMT3 31 0.000000 0.000000 1.000000 -49.57489 REMARK 350 BIOMT1 32 0.388191 0.921579 0.000000 -76.66809 REMARK 350 BIOMT2 32 -0.921579 0.388191 0.000000 379.51345 REMARK 350 BIOMT3 32 0.000000 0.000000 1.000000 -47.41946 REMARK 350 BIOMT1 33 0.999723 -0.023545 0.000000 5.89611 REMARK 350 BIOMT2 33 0.023545 0.999723 0.000000 -5.75888 REMARK 350 BIOMT3 33 0.000000 0.000000 1.000000 -45.26403 REMARK 350 BIOMT1 34 0.344375 -0.938832 0.000000 394.62820 REMARK 350 BIOMT2 34 0.938832 0.344375 0.000000 -70.09376 REMARK 350 BIOMT3 34 0.000000 0.000000 1.000000 -43.10860 REMARK 350 BIOMT1 35 -0.747375 -0.664402 0.000000 596.91490 REMARK 350 BIOMT2 35 0.664402 -0.747375 0.000000 268.03596 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 -40.95317 REMARK 350 BIOMT1 36 -0.892029 0.451979 0.000000 356.41228 REMARK 350 BIOMT2 36 -0.451979 -0.892029 0.000000 580.14187 REMARK 350 BIOMT3 36 0.000000 0.000000 1.000000 -38.79774 REMARK 350 BIOMT1 37 0.093724 0.995598 0.000000 -22.10734 REMARK 350 BIOMT2 37 -0.995598 0.093724 0.000000 470.71376 REMARK 350 BIOMT3 37 0.000000 0.000000 1.000000 -36.64231 REMARK 350 BIOMT1 38 0.960707 0.277565 0.000000 -58.97223 REMARK 350 BIOMT2 38 -0.277565 0.960707 0.000000 78.42229 REMARK 350 BIOMT3 38 0.000000 0.000000 1.000000 -34.48688 REMARK 350 BIOMT1 39 0.610252 -0.792207 0.000000 292.53393 REMARK 350 BIOMT2 39 0.792207 0.610252 0.000000 -99.60869 REMARK 350 BIOMT3 39 0.000000 0.000000 1.000000 -32.33145 REMARK 350 BIOMT1 40 -0.513533 -0.858070 0.000000 586.97171 REMARK 350 BIOMT2 40 0.858070 -0.513533 0.000000 162.22715 REMARK 350 BIOMT3 40 0.000000 0.000000 1.000000 -30.17602 REMARK 350 BIOMT1 41 -0.986553 0.163440 0.000000 451.22048 REMARK 350 BIOMT2 41 -0.163440 -0.986553 0.000000 532.12338 REMARK 350 BIOMT3 41 0.000000 0.000000 1.000000 -28.02059 REMARK 350 BIOMT1 42 -0.209383 0.977834 0.000000 57.30838 REMARK 350 BIOMT2 42 -0.977834 -0.209383 0.000000 541.33609 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 -25.86516 REMARK 350 BIOMT1 43 0.833124 0.553086 0.000000 -95.58704 REMARK 350 BIOMT2 43 -0.553086 0.833124 0.000000 178.19066 REMARK 350 BIOMT3 43 0.000000 0.000000 1.000000 -23.70973 REMARK 350 BIOMT1 44 0.819870 -0.572549 0.000000 186.28800 REMARK 350 BIOMT2 44 0.572549 0.819870 0.000000 -97.12384 REMARK 350 BIOMT3 44 0.000000 0.000000 1.000000 -21.55430 REMARK 350 BIOMT1 45 -0.232348 -0.972633 0.000000 545.73277 REMARK 350 BIOMT2 45 0.972633 -0.232348 0.000000 64.27961 REMARK 350 BIOMT3 45 0.000000 0.000000 1.000000 -19.39887 REMARK 350 BIOMT1 46 -0.990128 -0.140166 0.000000 527.24778 REMARK 350 BIOMT2 46 0.140166 -0.990128 0.000000 457.86558 REMARK 350 BIOMT3 46 0.000000 0.000000 1.000000 -17.24344 REMARK 350 BIOMT1 47 -0.493187 0.869923 0.000000 154.25778 REMARK 350 BIOMT2 47 -0.869923 -0.493187 0.000000 584.86981 REMARK 350 BIOMT3 47 0.000000 0.000000 1.000000 -15.08801 REMARK 350 BIOMT1 48 0.628736 0.777619 0.000000 -100.57281 REMARK 350 BIOMT2 48 -0.777619 0.628736 0.000000 284.34862 REMARK 350 BIOMT3 48 0.000000 0.000000 1.000000 -12.93258 REMARK 350 BIOMT1 49 0.953905 -0.300108 0.000000 85.68519 REMARK 350 BIOMT2 49 0.300108 0.953905 0.000000 -62.86827 REMARK 350 BIOMT3 49 0.000000 0.000000 1.000000 -10.77715 REMARK 350 BIOMT1 50 0.070257 -0.997529 0.000000 476.99990 REMARK 350 BIOMT2 50 0.997529 0.070257 0.000000 -16.77693 REMARK 350 BIOMT3 50 0.000000 0.000000 1.000000 -8.62172 REMARK 350 BIOMT1 51 -0.902423 -0.430850 0.000000 577.48527 REMARK 350 BIOMT2 51 0.430850 -0.902423 0.000000 364.21428 REMARK 350 BIOMT3 51 0.000000 0.000000 1.000000 -6.46629 REMARK 350 BIOMT1 52 -0.731525 0.681815 0.000000 259.80314 REMARK 350 BIOMT2 52 -0.681815 -0.731525 0.000000 597.30156 REMARK 350 BIOMT3 52 0.000000 0.000000 1.000000 -4.31086 REMARK 350 BIOMT1 53 0.366385 0.930464 0.000000 -73.46990 REMARK 350 BIOMT2 53 -0.930464 0.366385 0.000000 387.10953 REMARK 350 BIOMT3 53 0.000000 0.000000 1.000000 -2.15543 REMARK 350 BIOMT1 54 0.366385 -0.930464 0.000000 387.10953 REMARK 350 BIOMT2 54 0.930464 0.366385 0.000000 -73.46990 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 2.15543 REMARK 350 BIOMT1 55 -0.731525 -0.681815 0.000000 597.30156 REMARK 350 BIOMT2 55 0.681815 -0.731525 0.000000 259.80314 REMARK 350 BIOMT3 55 0.000000 0.000000 1.000000 4.31086 REMARK 350 BIOMT1 56 -0.902423 0.430850 0.000000 364.21428 REMARK 350 BIOMT2 56 -0.430850 -0.902423 0.000000 577.48527 REMARK 350 BIOMT3 56 0.000000 0.000000 1.000000 6.46629 REMARK 350 BIOMT1 57 0.070257 0.997529 0.000000 -16.77693 REMARK 350 BIOMT2 57 -0.997529 0.070257 0.000000 476.99990 REMARK 350 BIOMT3 57 0.000000 0.000000 1.000000 8.62172 REMARK 350 BIOMT1 58 0.953905 0.300108 0.000000 -62.86827 REMARK 350 BIOMT2 58 -0.300108 0.953905 0.000000 85.68519 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 10.77715 REMARK 350 BIOMT1 59 0.628736 -0.777619 0.000000 284.34862 REMARK 350 BIOMT2 59 0.777619 0.628736 0.000000 -100.57281 REMARK 350 BIOMT3 59 0.000000 0.000000 1.000000 12.93258 REMARK 350 BIOMT1 60 -0.493187 -0.869923 0.000000 584.86981 REMARK 350 BIOMT2 60 0.869923 -0.493187 0.000000 154.25778 REMARK 350 BIOMT3 60 0.000000 0.000000 1.000000 15.08801 REMARK 350 BIOMT1 61 -0.990128 0.140166 0.000000 457.86558 REMARK 350 BIOMT2 61 -0.140166 -0.990128 0.000000 527.24778 REMARK 350 BIOMT3 61 0.000000 0.000000 1.000000 17.24344 REMARK 350 BIOMT1 62 -0.232348 0.972633 0.000000 64.27961 REMARK 350 BIOMT2 62 -0.972633 -0.232348 0.000000 545.73277 REMARK 350 BIOMT3 62 0.000000 0.000000 1.000000 19.39887 REMARK 350 BIOMT1 63 0.819870 0.572549 0.000000 -97.12384 REMARK 350 BIOMT2 63 -0.572549 0.819870 0.000000 186.28800 REMARK 350 BIOMT3 63 0.000000 0.000000 1.000000 21.55430 REMARK 350 BIOMT1 64 0.833124 -0.553086 0.000000 178.19066 REMARK 350 BIOMT2 64 0.553086 0.833124 0.000000 -95.58704 REMARK 350 BIOMT3 64 0.000000 0.000000 1.000000 23.70973 REMARK 350 BIOMT1 65 -0.209383 -0.977834 0.000000 541.33609 REMARK 350 BIOMT2 65 0.977834 -0.209383 0.000000 57.30838 REMARK 350 BIOMT3 65 0.000000 0.000000 1.000000 25.86516 REMARK 350 BIOMT1 66 -0.986553 -0.163440 0.000000 532.12338 REMARK 350 BIOMT2 66 0.163440 -0.986553 0.000000 451.22048 REMARK 350 BIOMT3 66 0.000000 0.000000 1.000000 28.02059 REMARK 350 BIOMT1 67 -0.513533 0.858070 0.000000 162.22715 REMARK 350 BIOMT2 67 -0.858070 -0.513533 0.000000 586.97171 REMARK 350 BIOMT3 67 0.000000 0.000000 1.000000 30.17602 REMARK 350 BIOMT1 68 0.610252 0.792207 0.000000 -99.60869 REMARK 350 BIOMT2 68 -0.792207 0.610252 0.000000 292.53393 REMARK 350 BIOMT3 68 0.000000 0.000000 1.000000 32.33145 REMARK 350 BIOMT1 69 0.960707 -0.277565 0.000000 78.42229 REMARK 350 BIOMT2 69 0.277565 0.960707 0.000000 -58.97223 REMARK 350 BIOMT3 69 0.000000 0.000000 1.000000 34.48688 REMARK 350 BIOMT1 70 0.093724 -0.995598 0.000000 470.71376 REMARK 350 BIOMT2 70 0.995598 0.093724 0.000000 -22.10734 REMARK 350 BIOMT3 70 0.000000 0.000000 1.000000 36.64231 REMARK 350 BIOMT1 71 -0.892029 -0.451979 0.000000 580.14187 REMARK 350 BIOMT2 71 0.451979 -0.892029 0.000000 356.41228 REMARK 350 BIOMT3 71 0.000000 0.000000 1.000000 38.79774 REMARK 350 BIOMT1 72 -0.747375 0.664402 0.000000 268.03596 REMARK 350 BIOMT2 72 -0.664402 -0.747375 0.000000 596.91490 REMARK 350 BIOMT3 72 0.000000 0.000000 1.000000 40.95317 REMARK 350 BIOMT1 73 0.344375 0.938832 0.000000 -70.09376 REMARK 350 BIOMT2 73 -0.938832 0.344375 0.000000 394.62820 REMARK 350 BIOMT3 73 0.000000 0.000000 1.000000 43.10860 REMARK 350 BIOMT1 74 0.999723 0.023545 0.000000 -5.75888 REMARK 350 BIOMT2 74 -0.023545 0.999723 0.000000 5.89611 REMARK 350 BIOMT3 74 0.000000 0.000000 1.000000 45.26403 REMARK 350 BIOMT1 75 0.388191 -0.921579 0.000000 379.51345 REMARK 350 BIOMT2 75 0.921579 0.388191 0.000000 -76.66809 REMARK 350 BIOMT3 75 0.000000 0.000000 1.000000 47.41946 REMARK 350 BIOMT1 76 -0.715268 -0.698850 0.000000 597.49427 REMARK 350 BIOMT2 76 0.698850 -0.715268 0.000000 251.56351 REMARK 350 BIOMT3 76 0.000000 0.000000 1.000000 49.57489 REMARK 350 BIOMT1 77 -0.912318 0.409483 0.000000 371.95156 REMARK 350 BIOMT2 77 -0.409483 -0.912318 0.000000 574.64570 REMARK 350 BIOMT3 77 0.000000 0.000000 1.000000 51.73032 REMARK 350 BIOMT1 78 0.046750 0.998907 0.000000 -11.30000 REMARK 350 BIOMT2 78 -0.998907 0.046750 0.000000 483.15878 REMARK 350 BIOMT3 78 0.000000 0.000000 1.000000 53.88575 REMARK 350 BIOMT1 79 0.946575 0.322485 0.000000 -66.59223 REMARK 350 BIOMT2 79 -0.322485 0.946575 0.000000 93.03780 REMARK 350 BIOMT3 79 0.000000 0.000000 1.000000 56.04118 REMARK 350 BIOMT1 80 0.646871 -0.762600 0.000000 276.14289 REMARK 350 BIOMT2 80 0.762600 0.646871 0.000000 -101.34393 REMARK 350 BIOMT3 80 0.000000 0.000000 1.000000 58.19661 REMARK 350 BIOMT1 81 -0.472568 -0.881294 0.000000 582.58085 REMARK 350 BIOMT2 81 0.881294 -0.472568 0.000000 146.34012 REMARK 350 BIOMT3 81 0.000000 0.000000 1.000000 60.35204 REMARK 350 BIOMT1 82 -0.993154 0.116814 0.000000 464.39404 REMARK 350 BIOMT2 82 -0.116814 -0.993154 0.000000 522.21708 REMARK 350 BIOMT3 82 0.000000 0.000000 1.000000 62.50747 REMARK 350 BIOMT1 83 -0.255185 0.966892 0.000000 71.35242 REMARK 350 BIOMT2 83 -0.966892 -0.255185 0.000000 549.96410 REMARK 350 BIOMT3 83 0.000000 0.000000 1.000000 64.66290 REMARK 350 BIOMT1 84 0.806162 0.591695 0.000000 -98.46956 REMARK 350 BIOMT2 84 -0.591695 0.806162 0.000000 194.41929 REMARK 350 BIOMT3 84 0.000000 0.000000 1.000000 66.81833 REMARK 350 BIOMT1 85 0.845916 -0.533317 0.000000 170.13175 REMARK 350 BIOMT2 85 0.533317 0.845916 0.000000 -93.86001 REMARK 350 BIOMT3 85 0.000000 0.000000 1.000000 68.97376 REMARK 350 BIOMT1 86 -0.186301 -0.982493 0.000000 536.77649 REMARK 350 BIOMT2 86 0.982493 -0.186301 0.000000 50.44262 REMARK 350 BIOMT3 86 0.000000 0.000000 1.000000 71.12919 REMARK 350 BIOMT1 87 -0.982431 -0.186624 0.000000 536.84115 REMARK 350 BIOMT2 87 0.186624 -0.982431 0.000000 444.46243 REMARK 350 BIOMT3 87 0.000000 0.000000 1.000000 73.28462 REMARK 350 BIOMT1 88 -0.533594 0.845741 0.000000 170.24379 REMARK 350 BIOMT2 88 -0.845741 -0.533594 0.000000 588.88538 REMARK 350 BIOMT3 88 0.000000 0.000000 1.000000 75.44005 REMARK 350 BIOMT1 89 0.591430 0.806356 0.000000 -98.45212 REMARK 350 BIOMT2 89 -0.806356 0.591430 0.000000 300.69427 REMARK 350 BIOMT3 89 0.000000 0.000000 1.000000 77.59548 REMARK 350 BIOMT1 90 0.966976 -0.254867 0.000000 71.25315 REMARK 350 BIOMT2 90 0.254867 0.966976 0.000000 -54.90626 REMARK 350 BIOMT3 90 0.000000 0.000000 1.000000 79.75091 REMARK 350 BIOMT1 91 0.117140 -0.993115 0.000000 464.30386 REMARK 350 BIOMT2 91 0.993115 0.117140 0.000000 -27.28826 REMARK 350 BIOMT3 91 0.000000 0.000000 1.000000 81.90634 REMARK 350 BIOMT1 92 -0.881139 -0.472857 0.000000 582.61404 REMARK 350 BIOMT2 92 0.472857 -0.881139 0.000000 348.54989 REMARK 350 BIOMT3 92 0.000000 0.000000 1.000000 84.06177 REMARK 350 BIOMT1 93 -0.762812 0.646620 0.000000 276.25739 REMARK 350 BIOMT2 93 -0.646620 -0.762812 0.000000 596.33451 REMARK 350 BIOMT3 93 0.000000 0.000000 1.000000 86.21720 REMARK 350 BIOMT1 94 0.322174 0.946680 0.000000 -66.54151 REMARK 350 BIOMT2 94 -0.946680 0.322174 0.000000 402.06529 REMARK 350 BIOMT3 94 0.000000 0.000000 1.000000 88.37263 REMARK 350 BIOMT1 95 0.998891 0.047078 0.000000 -11.37733 REMARK 350 BIOMT2 95 -0.047078 0.998891 0.000000 11.92617 REMARK 350 BIOMT3 95 0.000000 0.000000 1.000000 90.52806 REMARK 350 BIOMT1 96 0.409783 -0.912183 0.000000 371.84418 REMARK 350 BIOMT2 96 0.912183 0.409783 0.000000 -79.68653 REMARK 350 BIOMT3 96 0.000000 0.000000 1.000000 92.68349 REMARK 350 BIOMT1 97 -0.698615 -0.715498 0.000000 597.49292 REMARK 350 BIOMT2 97 0.715498 -0.698615 0.000000 243.32162 REMARK 350 BIOMT3 97 0.000000 0.000000 1.000000 94.83892 REMARK 350 BIOMT1 98 -0.921706 0.387889 0.000000 379.61985 REMARK 350 BIOMT2 98 -0.387889 -0.921706 0.000000 571.62474 REMARK 350 BIOMT3 98 0.000000 0.000000 1.000000 96.99435 REMARK 350 BIOMT1 99 0.023217 0.999730 0.000000 -5.67956 REMARK 350 BIOMT2 99 -0.999730 0.023217 0.000000 489.18701 REMARK 350 BIOMT3 99 0.000000 0.000000 1.000000 99.14978 REMARK 350 BIOMT1 100 0.938719 0.344683 0.000000 -70.14203 REMARK 350 BIOMT2 100 -0.344683 0.938719 0.000000 100.47605 REMARK 350 BIOMT3 100 0.000000 0.000000 1.000000 101.30521 REMARK 350 BIOMT1 101 0.664647 -0.747157 0.000000 267.92127 REMARK 350 BIOMT2 101 0.747157 0.664647 0.000000 -101.92162 REMARK 350 BIOMT3 101 0.000000 0.000000 1.000000 103.46064 REMARK 350 BIOMT1 102 -0.451686 -0.892177 0.000000 580.10611 REMARK 350 BIOMT2 102 0.892177 -0.451686 0.000000 138.47854 REMARK 350 BIOMT3 102 0.000000 0.000000 1.000000 105.61607 REMARK 350 BIOMT1 103 -0.995629 0.093398 0.000000 470.80224 REMARK 350 BIOMT2 103 -0.093398 -0.995629 0.000000 517.03406 REMARK 350 BIOMT3 103 0.000000 0.000000 1.000000 107.77150 REMARK 350 BIOMT1 104 -0.277880 0.960616 0.000000 78.52290 REMARK 350 BIOMT2 104 -0.960616 -0.277880 0.000000 554.02771 REMARK 350 BIOMT3 104 0.000000 0.000000 1.000000 109.92693 REMARK 350 BIOMT1 105 0.792007 0.610512 0.000000 -99.62346 REMARK 350 BIOMT2 105 -0.610512 0.792007 0.000000 202.58000 REMARK 350 BIOMT3 105 0.000000 0.000000 1.000000 112.08236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG3 GLN A 153 H GLY A 154 1.35 REMARK 500 O LYS A 94 OG1 THR A 98 2.17 REMARK 500 O GLN A 124 OG SER A 127 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 34 -39.97 -39.13 REMARK 500 ASN A 160 48.43 -142.43 REMARK 500 ALA A 191 15.31 -143.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 157 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-18321 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF VIPP1-DELTAH6_AA1-219 HELICAL FILAMENT WITH REMARK 900 LATTICE 2 (VIPP1-DELTAH6_L2) DBREF 8QBV A 1 217 UNP B2J6D9 VIPP1_NOSP7 1 217 SEQRES 1 A 217 MET GLY LEU PHE ASP ARG ILE LYS ARG VAL VAL SER SER SEQRES 2 A 217 ASN LEU ASN ASP LEU VAL ASN LYS ALA GLU ASP PRO GLU SEQRES 3 A 217 LYS MET LEU GLU GLN ALA ILE LEU GLU MET GLN GLU ASP SEQRES 4 A 217 LEU VAL GLN LEU ARG GLN GLY VAL ALA GLN ALA ILE ALA SEQRES 5 A 217 ALA GLN LYS ARG SER GLU LYS GLN TYR ASN ASP ALA GLN SEQRES 6 A 217 ASN GLU ILE ASN LYS TRP GLN ARG ASN ALA GLN LEU ALA SEQRES 7 A 217 LEU GLN LYS GLY ASP GLU ASN LEU ALA ARG GLN ALA LEU SEQRES 8 A 217 GLU ARG LYS LYS THR TYR THR ASP THR SER ALA ALA LEU SEQRES 9 A 217 LYS ALA SER LEU ASP THR GLN SER THR GLN VAL GLU THR SEQRES 10 A 217 LEU LYS ARG ASN LEU ILE GLN LEU GLU SER LYS ILE SER SEQRES 11 A 217 GLU ALA LYS THR LYS LYS GLU MET LEU LYS ALA ARG ILE SEQRES 12 A 217 THR THR ALA LYS ALA GLN GLU GLN LEU GLN GLY MET VAL SEQRES 13 A 217 ARG GLY MET ASN THR SER SER ALA MET SER ALA PHE GLU SEQRES 14 A 217 ARG MET GLU GLU LYS VAL LEU MET GLN GLU SER ARG ALA SEQRES 15 A 217 GLN ALA LEU GLY GLU LEU ALA GLY ALA ASP LEU GLU THR SEQRES 16 A 217 GLN PHE ALA GLN LEU GLU GLY GLY SER ASP VAL ASP ASP SEQRES 17 A 217 GLU LEU ALA ALA LEU LYS ALA GLN MET HELIX 1 AA1 MET A 1 ALA A 22 1 22 HELIX 2 AA2 ASP A 24 GLN A 37 1 14 HELIX 3 AA3 GLU A 38 LYS A 81 1 44 HELIX 4 AA4 ASP A 83 GLN A 153 1 71 HELIX 5 AA5 SER A 162 ALA A 189 1 28 HELIX 6 AA6 ALA A 191 GLN A 216 1 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000