HEADER OXIDOREDUCTASE 25-AUG-23 8QC1 TITLE RESPIRATORY COMPLEX I FROM PARACOCCUS DENITRIFICANS IN MSP2N2 TITLE 2 NANODISCS (ND4 & ND5 FOCUS REFINEMENT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH DEHYDROGENASE SUBUNIT M; COMPND 3 CHAIN: M; COMPND 4 EC: 1.6.5.3; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NADH DEHYDROGENASE SUBUNIT L; COMPND 7 CHAIN: L; COMPND 8 EC: 1.6.5.3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS PD1222; SOURCE 3 ORGANISM_TAXID: 318586; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS PD1222; SOURCE 6 ORGANISM_TAXID: 318586 KEYWDS RESPIRATORY COMPLEX I, NADH:UBIQUINONE OXIDOREDUCTASE, NANODISCS, KEYWDS 2 OXIDOREDUCTASE EXPDTA ELECTRON MICROSCOPY AUTHOR B.S.IVANOV,H.R.BRIDGES,J.HIRST REVDAT 1 11-SEP-24 8QC1 0 JRNL AUTH B.S.IVANOV,H.R.BRIDGES,J.HIRST,O.D.JARMAN JRNL TITL RESPIRATORY COMPLEX I FROM PARACOCCUS DENITRIFICANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, CTFFIND, PHENIX, RELION, RELION, REMARK 3 RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.500 REMARK 3 NUMBER OF PARTICLES : 146603 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8QC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132925. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RESPIRATORY COMPLEX I REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 16814 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA M 504 REMARK 465 PRO M 505 REMARK 465 VAL M 506 REMARK 465 ALA M 507 REMARK 465 THR M 508 REMARK 465 ALA M 509 REMARK 465 GLN M 510 REMARK 465 ALA M 511 REMARK 465 SER M 512 REMARK 465 HIS M 513 REMARK 465 ALA L 507 REMARK 465 GLY L 508 REMARK 465 ALA L 509 REMARK 465 HIS L 510 REMARK 465 HIS L 511 REMARK 465 GLU L 512 REMARK 465 ALA L 513 REMARK 465 ALA L 514 REMARK 465 GLU L 515 REMARK 465 GLY L 516 REMARK 465 GLU L 517 REMARK 465 GLU L 518 REMARK 465 ALA L 519 REMARK 465 GLU L 520 REMARK 465 HIS L 521 REMARK 465 ALA L 522 REMARK 465 THR L 523 REMARK 465 ALA L 524 REMARK 465 GLU L 525 REMARK 465 ALA L 526 REMARK 465 PRO L 527 REMARK 465 VAL L 528 REMARK 465 GLU L 529 REMARK 465 HIS L 530 REMARK 465 ALA L 531 REMARK 465 VAL L 532 REMARK 465 ALA L 533 REMARK 465 ASP L 534 REMARK 465 THR L 535 REMARK 465 ALA L 536 REMARK 465 THR L 537 REMARK 465 ALA L 538 REMARK 465 GLU L 539 REMARK 465 GLY L 540 REMARK 465 GLU L 541 REMARK 465 ALA L 542 REMARK 465 ALA L 543 REMARK 465 ALA L 544 REMARK 465 GLU L 545 REMARK 465 ALA L 546 REMARK 465 GLU L 547 REMARK 465 HIS L 548 REMARK 465 ALA L 549 REMARK 465 GLU L 550 REMARK 465 ALA L 660 REMARK 465 MET L 661 REMARK 465 GLY L 662 REMARK 465 LEU L 663 REMARK 465 ILE L 664 REMARK 465 PRO L 665 REMARK 465 ARG L 666 REMARK 465 LEU L 667 REMARK 465 THR L 668 REMARK 465 ARG L 669 REMARK 465 ALA L 670 REMARK 465 ALA L 671 REMARK 465 VAL L 672 REMARK 465 ARG L 673 REMARK 465 VAL L 674 REMARK 465 GLN L 675 REMARK 465 SER L 676 REMARK 465 GLY L 677 REMARK 465 TYR L 678 REMARK 465 LEU L 679 REMARK 465 PHE L 680 REMARK 465 HIS L 681 REMARK 465 TYR L 682 REMARK 465 ALA L 683 REMARK 465 PHE L 684 REMARK 465 ALA L 685 REMARK 465 MET L 686 REMARK 465 VAL L 687 REMARK 465 LEU L 688 REMARK 465 GLY L 689 REMARK 465 ILE L 690 REMARK 465 VAL L 691 REMARK 465 GLY L 692 REMARK 465 LEU L 693 REMARK 465 LEU L 694 REMARK 465 ILE L 695 REMARK 465 TRP L 696 REMARK 465 VAL L 697 REMARK 465 MET L 698 REMARK 465 MET L 699 REMARK 465 ARG L 700 REMARK 465 GLY L 701 REMARK 465 ALA L 702 REMARK 465 HIS L 703 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU L 368 OH TYR L 374 1.85 REMARK 500 O ALA M 331 O HOH M 701 1.98 REMARK 500 O HOH M 727 O HOH M 737 1.99 REMARK 500 O HIS L 69 O HOH L 901 2.00 REMARK 500 O ALA L 435 O HOH L 902 2.04 REMARK 500 OE2 GLU M 112 O HOH M 702 2.05 REMARK 500 O HOH M 756 O HOH M 761 2.06 REMARK 500 OE1 GLU M 405 O HOH M 703 2.08 REMARK 500 O HOH M 758 O HOH M 763 2.11 REMARK 500 O LYS L 621 O HOH L 903 2.15 REMARK 500 O HOH M 737 O HOH M 765 2.15 REMARK 500 O LEU M 21 NH2 ARG M 24 2.16 REMARK 500 O HOH M 728 O HOH L 939 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU M 209 -125.48 62.59 REMARK 500 PRO M 237 34.40 -99.98 REMARK 500 VAL L 59 -59.16 -122.65 REMARK 500 TRP L 62 -66.93 -96.68 REMARK 500 LEU L 217 -114.88 68.12 REMARK 500 LEU L 243 -7.71 75.83 REMARK 500 THR L 266 -65.74 -97.45 REMARK 500 LEU L 377 -6.59 76.24 REMARK 500 HIS L 505 59.08 39.18 REMARK 500 LYS L 621 35.64 70.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 3PH M 601 REMARK 610 3PH M 602 REMARK 610 3PH M 603 REMARK 610 3PE M 604 REMARK 610 3PH M 605 REMARK 610 3PE M 606 REMARK 610 3PE M 607 REMARK 610 CDL M 608 REMARK 610 3PH M 609 REMARK 610 3PH M 610 REMARK 610 3PH L 801 REMARK 610 P5S L 802 REMARK 610 3PE L 803 REMARK 610 3PH L 804 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA M 611 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU M 197 O REMARK 620 2 PRO M 275 O 122.0 REMARK 620 3 HOH M 748 O 79.5 100.6 REMARK 620 4 HOH M 750 O 132.9 83.2 138.9 REMARK 620 5 HOH M 754 O 161.1 63.5 81.7 63.3 REMARK 620 6 HOH M 766 O 90.3 147.6 86.6 71.4 86.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-18324 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-18325 RELATED DB: EMDB REMARK 900 RESPIRATORY COMPLEX I FROM PARACOCCUS DENITRIFICANS IN MSP2N2 REMARK 900 NANODISCS (ND4 & ND5 FOCUS REFINEMENT) DBREF 8QC1 M 1 513 UNP A1B480 A1B480_PARDP 1 513 DBREF 8QC1 L 1 703 UNP A1B481 A1B481_PARDP 1 703 SEQRES 1 M 513 MET THR ASN LEU LEU SER ILE ILE THR PHE LEU PRO ILE SEQRES 2 M 513 VAL ALA ALA ILE ILE MET ALA LEU PHE LEU ARG GLY GLN SEQRES 3 M 513 ASP GLU ALA ALA ALA ARG ASN ALA LYS TRP LEU ALA LEU SEQRES 4 M 513 LEU THR THR THR ALA THR PHE VAL ILE SER LEU PHE VAL SEQRES 5 M 513 LEU PHE ARG PHE ASP PRO ALA ASN THR GLY PHE GLN PHE SEQRES 6 M 513 VAL GLU ASP HIS ALA TRP ILE MET GLY LEU ARG TYR LYS SEQRES 7 M 513 MET GLY VAL ASP GLY ILE SER VAL LEU PHE VAL LEU LEU SEQRES 8 M 513 THR THR PHE MET MET PRO LEU THR ILE LEU SER THR TRP SEQRES 9 M 513 GLN VAL GLN ASP LYS VAL LYS GLU TYR MET ILE ALA PHE SEQRES 10 M 513 LEU VAL LEU GLU GLY LEU MET ILE GLY VAL PHE THR ALA SEQRES 11 M 513 LEU ASP LEU VAL LEU PHE TYR LEU PHE PHE GLU ALA GLY SEQRES 12 M 513 LEU ILE PRO MET PHE LEU ILE ILE GLY ILE TRP GLY GLY SEQRES 13 M 513 LYS ASP ARG ILE TYR ALA SER PHE LYS PHE PHE LEU TYR SEQRES 14 M 513 THR PHE LEU GLY SER VAL LEU MET LEU VAL ALA MET ILE SEQRES 15 M 513 ALA MET TYR ARG MET ALA GLY THR THR ASP ILE PRO THR SEQRES 16 M 513 LEU LEU THR PHE ASP PHE PRO SER GLU ASN PHE ARG LEU SEQRES 17 M 513 LEU GLY MET THR VAL VAL GLY GLY MET GLN MET LEU LEU SEQRES 18 M 513 PHE LEU ALA PHE PHE ALA SER PHE ALA VAL LYS MET PRO SEQRES 19 M 513 MET TRP PRO VAL HIS THR TRP LEU PRO ASP ALA HIS VAL SEQRES 20 M 513 GLN ALA PRO THR ALA GLY SER VAL LEU LEU ALA ALA VAL SEQRES 21 M 513 LEU LEU LYS MET GLY GLY TYR GLY PHE LEU ARG PHE SER SEQRES 22 M 513 LEU PRO MET PHE PRO VAL ALA SER GLY VAL ALA GLN PRO SEQRES 23 M 513 TYR VAL PHE TRP LEU SER ALA ILE ALA ILE VAL TYR THR SEQRES 24 M 513 SER LEU VAL ALA LEU ALA GLN SER ASP MET LYS LYS VAL SEQRES 25 M 513 ILE ALA TYR SER SER VAL ALA HIS MET GLY TYR VAL THR SEQRES 26 M 513 MET GLY VAL PHE ALA ALA ASN GLN ILE GLY VAL ASP GLY SEQRES 27 M 513 ALA ILE PHE GLN MET LEU SER HIS GLY PHE ILE SER GLY SEQRES 28 M 513 ALA LEU PHE LEU CYS VAL GLY VAL ILE TYR ASP ARG MET SEQRES 29 M 513 HIS THR ARG GLU ILE ASP ALA TYR GLY GLY LEU VAL ASN SEQRES 30 M 513 ARG MET PRO ALA TYR ALA ALA VAL PHE MET PHE PHE THR SEQRES 31 M 513 MET ALA ASN VAL GLY LEU PRO GLY THR SER GLY PHE VAL SEQRES 32 M 513 GLY GLU PHE LEU THR LEU MET GLY VAL PHE ARG VAL ASP SEQRES 33 M 513 THR TRP VAL ALA LEU VAL ALA THR SER GLY VAL ILE LEU SEQRES 34 M 513 SER ALA ALA TYR ALA LEU TRP LEU TYR ARG ARG VAL THR SEQRES 35 M 513 LEU GLY GLN LEU ILE LYS GLU SER LEU LYS SER ILE THR SEQRES 36 M 513 ASP MET THR PRO ARG GLU ARG TRP VAL PHE ILE PRO LEU SEQRES 37 M 513 ILE ALA MET THR LEU ILE LEU GLY VAL TYR PRO ARG LEU SEQRES 38 M 513 VAL THR ASP VAL THR GLY PRO ALA VAL ALA ALA LEU VAL SEQRES 39 M 513 GLN ASP TYR ASN GLN SER GLN PRO ALA ALA PRO VAL ALA SEQRES 40 M 513 THR ALA GLN ALA SER HIS SEQRES 1 L 703 MET GLU LYS PHE VAL LEU PHE ALA PRO LEU ILE ALA SER SEQRES 2 L 703 LEU ILE ALA GLY LEU GLY TRP ARG ALA ILE GLY GLU LYS SEQRES 3 L 703 ALA ALA GLN TYR LEU THR THR GLY VAL LEU PHE LEU SER SEQRES 4 L 703 CYS LEU ILE SER TRP TYR LEU PHE LEU SER PHE ASP GLY SEQRES 5 L 703 VAL PRO ARG HIS ILE PRO VAL LEU ASP TRP VAL VAL THR SEQRES 6 L 703 GLY ASP PHE HIS ALA GLU TRP ALA ILE ARG LEU ASP ARG SEQRES 7 L 703 LEU THR ALA ILE MET LEU ILE VAL VAL THR THR VAL SER SEQRES 8 L 703 ALA LEU VAL HIS MET TYR SER LEU GLY TYR MET ALA HIS SEQRES 9 L 703 ASP ASP ASN TRP THR HIS ASP GLU HIS TYR LYS ALA ARG SEQRES 10 L 703 PHE PHE ALA TYR LEU SER PHE PHE THR PHE ALA MET LEU SEQRES 11 L 703 MET LEU VAL THR ALA ASP ASN LEU LEU GLN MET PHE PHE SEQRES 12 L 703 GLY TRP GLU GLY VAL GLY VAL ALA SER TYR LEU LEU ILE SEQRES 13 L 703 GLY PHE TYR TYR LYS LYS ALA SER ALA ASN ALA ALA ALA SEQRES 14 L 703 MET LYS ALA PHE ILE VAL ASN ARG VAL GLY ASP PHE GLY SEQRES 15 L 703 PHE LEU LEU GLY ILE PHE GLY ILE TYR TRP LEU THR GLY SEQRES 16 L 703 SER VAL GLN PHE ASP GLU ILE PHE ARG GLN VAL PRO GLN SEQRES 17 L 703 LEU ALA GLN THR GLU MET HIS PHE LEU TRP ARG ASP TRP SEQRES 18 L 703 ASN ALA ALA ASN LEU LEU GLY PHE LEU LEU PHE VAL GLY SEQRES 19 L 703 ALA MET GLY LYS SER ALA GLN LEU LEU LEU HIS THR TRP SEQRES 20 L 703 LEU PRO ASP ALA MET GLU GLY PRO THR PRO VAL SER ALA SEQRES 21 L 703 LEU ILE HIS ALA ALA THR MET VAL THR ALA GLY VAL PHE SEQRES 22 L 703 LEU VAL CYS ARG MET SER PRO LEU TYR GLU PHE ALA PRO SEQRES 23 L 703 ASP ALA LYS ASN PHE ILE VAL ILE ILE GLY ALA THR THR SEQRES 24 L 703 ALA PHE PHE ALA ALA THR VAL GLY LEU VAL GLN ASN ASP SEQRES 25 L 703 ILE LYS ARG VAL ILE ALA TYR SER THR CYS SER GLN LEU SEQRES 26 L 703 GLY TYR MET PHE VAL ALA ALA GLY VAL GLY VAL TYR SER SEQRES 27 L 703 ALA ALA MET PHE HIS LEU LEU THR HIS ALA PHE PHE LYS SEQRES 28 L 703 ALA MET LEU PHE LEU GLY ALA GLY SER VAL ILE HIS ALA SEQRES 29 L 703 MET HIS HIS GLU GLN ASP MET ARG ASN TYR GLY GLY LEU SEQRES 30 L 703 ARG LYS LYS ILE PRO LEU THR PHE TRP ALA MET MET ILE SEQRES 31 L 703 GLY THR PHE ALA ILE THR GLY VAL GLY ILE PRO LEU THR SEQRES 32 L 703 HIS LEU GLY PHE ALA GLY PHE LEU SER LYS ASP ALA ILE SEQRES 33 L 703 ILE GLU SER ALA TYR ALA GLY SER GLY TYR ALA PHE TRP SEQRES 34 L 703 LEU LEU VAL ILE ALA ALA CYS PHE THR SER PHE TYR SER SEQRES 35 L 703 TRP ARG LEU ILE PHE LEU THR PHE TYR GLY LYS PRO ARG SEQRES 36 L 703 GLY ASP HIS HIS ALA HIS ASP HIS ALA HIS GLU SER PRO SEQRES 37 L 703 PRO VAL MET THR ILE PRO LEU GLY VAL LEU ALA ILE GLY SEQRES 38 L 703 ALA VAL PHE ALA GLY MET VAL TRP TYR GLY PRO PHE PHE SEQRES 39 L 703 GLY ASP HIS HIS LYS VAL THR GLU TYR PHE HIS ILE ALA SEQRES 40 L 703 GLY ALA HIS HIS GLU ALA ALA GLU GLY GLU GLU ALA GLU SEQRES 41 L 703 HIS ALA THR ALA GLU ALA PRO VAL GLU HIS ALA VAL ALA SEQRES 42 L 703 ASP THR ALA THR ALA GLU GLY GLU ALA ALA ALA GLU ALA SEQRES 43 L 703 GLU HIS ALA GLU ILE ALA ALA PRO VAL GLY GLY ALA ILE SEQRES 44 L 703 TYR MET HIS PRO ASP ASN HIS ILE MET ASP GLU ALA HIS SEQRES 45 L 703 HIS ALA PRO ALA TRP VAL LYS VAL SER PRO PHE VAL ALA SEQRES 46 L 703 MET VAL LEU GLY LEU ILE THR ALA TRP THR PHE TYR ILE SEQRES 47 L 703 ALA ASN PRO SER LEU PRO ARG ARG LEU ALA ALA GLN GLN SEQRES 48 L 703 PRO ALA LEU TYR ARG PHE LEU LEU ASN LYS TRP TYR PHE SEQRES 49 L 703 ASP GLU ILE TYR GLU PHE ILE PHE VAL ARG PRO ALA LYS SEQRES 50 L 703 TRP LEU GLY ARG VAL LEU TRP LYS GLY GLY ASP GLY ALA SEQRES 51 L 703 VAL ILE ASP GLY THR ILE ASN GLY VAL ALA MET GLY LEU SEQRES 52 L 703 ILE PRO ARG LEU THR ARG ALA ALA VAL ARG VAL GLN SER SEQRES 53 L 703 GLY TYR LEU PHE HIS TYR ALA PHE ALA MET VAL LEU GLY SEQRES 54 L 703 ILE VAL GLY LEU LEU ILE TRP VAL MET MET ARG GLY ALA SEQRES 55 L 703 HIS HET 3PH M 601 46 HET 3PH M 602 36 HET 3PH M 603 31 HET 3PE M 604 42 HET 3PH M 605 33 HET 3PE M 606 41 HET 3PE M 607 29 HET CDL M 608 65 HET 3PH M 609 31 HET 3PH M 610 33 HET CA M 611 1 HET 3PH L 801 45 HET P5S L 802 40 HET 3PE L 803 45 HET 3PH L 804 29 HETNAM 3PH 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE HETNAM 3PE 1,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMINE HETNAM CDL CARDIOLIPIN HETNAM CA CALCIUM ION HETNAM P5S O-[(R)-{[(2R)-2,3-BIS(OCTADECANOYLOXY) HETNAM 2 P5S PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE HETSYN 3PH PHOSPHATIDIC ACID HETSYN 3PE 3-SN-PHOSPHATIDYLETHANOLAMINE; 1,2-DIACYL-SN-GLYCERO-3- HETSYN 2 3PE PHOSPHOETHANOLAMINE HETSYN CDL DIPHOSPHATIDYL GLYCEROL; BIS-(1,2-DIACYL-SN-GLYCERO-3- HETSYN 2 CDL PHOSPHO)-1',3'-SN-GLYCEROL HETSYN P5S PHOSPHATIDYL SERINE FORMUL 3 3PH 8(C39 H77 O8 P) FORMUL 6 3PE 4(C41 H82 N O8 P) FORMUL 10 CDL C81 H156 O17 P2 2- FORMUL 13 CA CA 2+ FORMUL 15 P5S C42 H82 N O10 P FORMUL 18 HOH *115(H2 O) HELIX 1 AA1 ASN M 3 LEU M 23 1 21 HELIX 2 AA2 ASP M 27 PHE M 56 1 30 HELIX 3 AA3 SER M 85 THR M 103 1 19 HELIX 4 AA4 TRP M 104 VAL M 106 5 3 HELIX 5 AA5 LYS M 109 ALA M 130 1 22 HELIX 6 AA6 ASP M 132 GLY M 143 1 12 HELIX 7 AA7 GLY M 143 GLY M 155 1 13 HELIX 8 AA8 ASP M 158 GLY M 189 1 32 HELIX 9 AA9 ASP M 192 LEU M 197 1 6 HELIX 10 AB1 GLY M 215 MET M 233 1 19 HELIX 11 AB2 TRP M 241 ALA M 249 1 9 HELIX 12 AB3 PRO M 250 VAL M 260 1 11 HELIX 13 AB4 LEU M 262 PHE M 272 1 11 HELIX 14 AB5 PHE M 272 PHE M 277 1 6 HELIX 15 AB6 PHE M 277 ALA M 305 1 29 HELIX 16 AB7 ASP M 308 ALA M 331 1 24 HELIX 17 AB8 ASN M 332 HIS M 365 1 34 HELIX 18 AB9 GLU M 368 TYR M 372 5 5 HELIX 19 AC1 GLY M 374 ARG M 378 5 5 HELIX 20 AC2 MET M 379 VAL M 394 1 16 HELIX 21 AC3 THR M 399 ASP M 416 1 18 HELIX 22 AC4 ASP M 416 SER M 425 1 10 HELIX 23 AC5 SER M 425 LEU M 443 1 19 HELIX 24 AC6 LYS M 448 LYS M 452 5 5 HELIX 25 AC7 THR M 458 TYR M 478 1 21 HELIX 26 AC8 PRO M 479 SER M 500 1 22 HELIX 27 AC9 GLU L 2 GLY L 24 1 23 HELIX 28 AD1 GLY L 24 PHE L 50 1 27 HELIX 29 AD2 ASP L 77 MET L 102 1 26 HELIX 30 AD3 TYR L 114 THR L 134 1 21 HELIX 31 AD4 ASN L 137 GLY L 157 1 21 HELIX 32 AD5 LYS L 162 GLY L 195 1 34 HELIX 33 AD6 GLN L 198 ALA L 210 1 13 HELIX 34 AD7 ALA L 223 SER L 239 1 17 HELIX 35 AD8 THR L 246 ALA L 251 1 6 HELIX 36 AD9 MET L 252 GLY L 254 5 3 HELIX 37 AE1 PRO L 255 ALA L 265 1 11 HELIX 38 AE2 THR L 266 MET L 278 1 13 HELIX 39 AE3 MET L 278 GLU L 283 1 6 HELIX 40 AE4 ALA L 285 GLY L 307 1 23 HELIX 41 AE5 ASP L 312 VAL L 334 1 23 HELIX 42 AE6 VAL L 336 MET L 365 1 30 HELIX 43 AE7 ASP L 370 TYR L 374 5 5 HELIX 44 AE8 ILE L 381 GLY L 397 1 17 HELIX 45 AE9 PHE L 407 SER L 424 1 18 HELIX 46 AF1 SER L 424 TYR L 451 1 28 HELIX 47 AF2 ASP L 457 ALA L 464 1 8 HELIX 48 AF3 PRO L 468 PHE L 494 1 27 HELIX 49 AF4 ASP L 496 PHE L 504 1 9 HELIX 50 AF5 HIS L 566 HIS L 573 1 8 HELIX 51 AF6 PRO L 575 ILE L 598 1 24 HELIX 52 AF7 SER L 602 GLN L 611 1 10 HELIX 53 AF8 GLN L 611 ASN L 620 1 10 HELIX 54 AF9 TYR L 623 PHE L 632 1 10 HELIX 55 AG1 PHE L 632 GLY L 647 1 16 HELIX 56 AG2 VAL L 651 VAL L 659 1 9 SHEET 1 AA1 2 GLN M 64 ALA M 70 0 SHEET 2 AA1 2 ARG M 76 VAL M 81 -1 O VAL M 81 N GLN M 64 SHEET 1 AA2 2 ARG L 55 THR L 65 0 SHEET 2 AA2 2 PHE L 68 LEU L 76 -1 O TRP L 72 N LEU L 60 SHEET 1 AA3 2 GLU L 213 PHE L 216 0 SHEET 2 AA3 2 ARG L 219 ASN L 222 -1 O TRP L 221 N MET L 214 LINK O LEU M 197 CA CA M 611 1555 1555 2.14 LINK O PRO M 275 CA CA M 611 1555 1555 2.34 LINK CA CA M 611 O HOH M 748 1555 1555 2.36 LINK CA CA M 611 O HOH M 750 1555 1555 2.05 LINK CA CA M 611 O HOH M 754 1555 1555 3.13 LINK CA CA M 611 O HOH M 766 1555 1555 3.01 CISPEP 1 MET M 233 PRO M 234 0 -8.14 CISPEP 2 TRP M 236 PRO M 237 0 0.94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000