HEADER TRANSFERASE 28-AUG-23 8QCW TITLE THE CRYSTAL STRUCTURE OF THE TRUNCATED FORM OF LOTUS JAPONICUS KINASE TITLE 2 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LOTUS JAPONICUS; SOURCE 3 ORGANISM_TAXID: 34305; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KINASE, GSK3BETA-LIKE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.D.LEONIDAS,T.SOLOVOU REVDAT 2 06-MAR-24 8QCW 1 JRNL REVDAT 1 21-FEB-24 8QCW 0 SPRSDE 21-FEB-24 8QCW 8AHP JRNL AUTH T.G.A.SOLOVOU,G.STRAVODIMOS,G.E.PAPADOPOULOS,V.T.SKAMNAKI, JRNL AUTH 2 K.PAPADOPOULOU,D.D.LEONIDAS JRNL TITL BIOCHEMICAL AND STRUCTURAL STUDIES OF LJSK1, A LOTUS JRNL TITL 2 JAPONICUS GSK3 BETA /SHAGGY-LIKE KINASE, REVEAL ITS JRNL TITL 3 FUNCTIONAL ROLE. JRNL REF J.AGRIC.FOOD CHEM. V. 72 3763 2024 JRNL REFN ESSN 1520-5118 JRNL PMID 38330914 JRNL DOI 10.1021/ACS.JAFC.3C07101 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 7936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 882 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 550 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2877 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.565 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.510 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.457 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.826 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2952 ; 0.002 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2819 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4010 ; 0.828 ; 1.671 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6505 ; 0.274 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 6.884 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ; 6.228 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;13.817 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3397 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 659 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1430 ; 2.112 ; 5.681 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1430 ; 2.112 ; 5.681 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1778 ; 3.701 ;10.217 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1779 ; 3.700 ;10.216 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1522 ; 1.635 ; 5.892 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1518 ; 1.608 ; 5.889 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2233 ; 2.935 ;10.767 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11879 ; 7.899 ;66.640 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11879 ; 7.898 ;66.640 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292133024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8837 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 43.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIN PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27 MM NANO3, 27 MM NA2HPO4, 27 MM REMARK 280 AMMONIUM SULFATE, 0.1 M MES, 12% (V/V) PEG 500 MME & 6% (V/V) REMARK 280 PEG 20000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.65900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.82050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.66150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.82050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.65900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.66150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 MET A 3 REMARK 465 MET A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 7 REMARK 465 LYS A 8 REMARK 465 SER A 9 REMARK 465 ILE A 10 REMARK 465 ALA A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 THR A 15 REMARK 465 SER A 16 REMARK 465 ILE A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 ASP A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 ASP A 24 REMARK 465 SER A 25 REMARK 465 ASN A 26 REMARK 465 SER A 27 REMARK 465 LYS A 28 REMARK 465 ARG A 29 REMARK 465 ALA A 30 REMARK 465 LYS A 31 REMARK 465 LEU A 32 REMARK 465 ASP A 33 REMARK 465 GLN A 34 REMARK 465 GLU A 35 REMARK 465 THR A 36 REMARK 465 GLU A 37 REMARK 465 LYS A 38 REMARK 465 LYS A 39 REMARK 465 VAL A 40 REMARK 465 ASN A 41 REMARK 465 GLU A 42 REMARK 465 GLU A 43 REMARK 465 THR A 44 REMARK 465 LYS A 45 REMARK 465 THR A 46 REMARK 465 LEU A 47 REMARK 465 GLY A 48 REMARK 465 GLY A 49 REMARK 465 LYS A 50 REMARK 465 ASP A 51 REMARK 465 GLN A 52 REMARK 465 GLU A 53 REMARK 465 GLN A 54 REMARK 465 HIS A 55 REMARK 465 VAL A 56 REMARK 465 ASP A 57 REMARK 465 ALA A 58 REMARK 465 SER A 59 REMARK 465 LYS A 60 REMARK 465 GLU A 61 REMARK 465 SER A 62 REMARK 465 THR A 63 REMARK 465 VAL A 64 REMARK 465 GLY A 65 REMARK 465 THR A 66 REMARK 465 SER A 67 REMARK 465 ASP A 68 REMARK 465 VAL A 69 REMARK 465 SER A 70 REMARK 465 THR A 71 REMARK 465 VAL A 72 REMARK 465 ALA A 73 REMARK 465 LYS A 74 REMARK 465 THR A 75 REMARK 465 GLU A 76 REMARK 465 LYS A 77 REMARK 465 SER A 78 REMARK 465 GLY A 79 REMARK 465 PHE A 80 REMARK 465 ASP A 81 REMARK 465 GLU A 82 REMARK 465 LEU A 83 REMARK 465 PRO A 84 REMARK 465 LYS A 85 REMARK 465 GLU A 86 REMARK 465 LEU A 87 REMARK 465 HIS A 88 REMARK 465 GLU A 89 REMARK 465 MET A 90 REMARK 465 LYS A 91 REMARK 465 ILE A 92 REMARK 465 LYS A 93 REMARK 465 ASP A 94 REMARK 465 GLU A 95 REMARK 465 LYS A 96 REMARK 465 SER A 97 REMARK 465 LYS A 98 REMARK 465 ASN A 99 REMARK 465 ASN A 100 REMARK 465 ILE A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 ARG A 128 REMARK 465 ASP A 129 REMARK 465 GLY A 130 REMARK 465 ARG A 465 REMARK 465 SER A 466 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 299 C - N - CA ANGL. DEV. = 21.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 102 -71.47 62.94 REMARK 500 ASN A 113 -32.91 69.71 REMARK 500 THR A 122 -134.88 56.05 REMARK 500 ARG A 142 98.96 52.96 REMARK 500 THR A 146 -102.26 -129.50 REMARK 500 ARG A 174 -98.11 41.77 REMARK 500 ASN A 177 -82.62 -86.19 REMARK 500 ARG A 178 -17.77 59.49 REMARK 500 LYS A 204 -113.05 51.73 REMARK 500 ASP A 205 -127.35 39.37 REMARK 500 GLU A 206 -157.09 -158.69 REMARK 500 PRO A 217 -71.47 -69.68 REMARK 500 ASP A 263 61.24 -166.99 REMARK 500 GLN A 274 -64.85 -91.04 REMARK 500 ASP A 282 88.48 57.75 REMARK 500 PHE A 283 32.56 -97.27 REMARK 500 CYS A 300 129.25 74.30 REMARK 500 PHE A 311 31.28 -88.25 REMARK 500 THR A 314 -36.09 -140.88 REMARK 500 PHE A 339 73.86 -119.26 REMARK 500 ASN A 371 -152.49 82.21 REMARK 500 PRO A 439 179.02 -59.14 REMARK 500 HIS A 451 108.96 -59.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 297 21.66 REMARK 500 REMARK 500 REMARK: NULL DBREF 8QCW A 1 464 UNP Q53VM1 Q53VM1_LOTJA 1 464 SEQADV 8QCW ARG A 465 UNP Q53VM1 EXPRESSION TAG SEQADV 8QCW SER A 466 UNP Q53VM1 EXPRESSION TAG SEQRES 1 A 466 MET ASN MET MET ARG ARG LEU LYS SER ILE ALA SER GLY SEQRES 2 A 466 ARG THR SER ILE SER SER ASP PRO GLY GLY ASP SER ASN SEQRES 3 A 466 SER LYS ARG ALA LYS LEU ASP GLN GLU THR GLU LYS LYS SEQRES 4 A 466 VAL ASN GLU GLU THR LYS THR LEU GLY GLY LYS ASP GLN SEQRES 5 A 466 GLU GLN HIS VAL ASP ALA SER LYS GLU SER THR VAL GLY SEQRES 6 A 466 THR SER ASP VAL SER THR VAL ALA LYS THR GLU LYS SER SEQRES 7 A 466 GLY PHE ASP GLU LEU PRO LYS GLU LEU HIS GLU MET LYS SEQRES 8 A 466 ILE LYS ASP GLU LYS SER LYS ASN ASN ASN GLU LYS ASP SEQRES 9 A 466 ILE GLU ALA SER ILE VAL SER GLY ASN GLY THR GLU THR SEQRES 10 A 466 GLY GLN ILE ILE THR THR ALA ILE GLY GLY ARG ASP GLY SEQRES 11 A 466 GLN PRO LYS GLN THR ILE SER TYR MET ALA GLU ARG VAL SEQRES 12 A 466 VAL GLY THR GLY SER PHE GLY VAL VAL PHE GLN ALA LYS SEQRES 13 A 466 CYS LEU GLU THR GLY GLU ALA VAL ALA ILE LYS LYS VAL SEQRES 14 A 466 LEU GLN ASP LYS ARG TYR LYS ASN ARG GLU LEU GLN VAL SEQRES 15 A 466 MET ARG THR VAL ASP HIS PRO ASN ILE VAL LYS LEU LYS SEQRES 16 A 466 HIS CYS PHE PHE SER THR THR ASP LYS ASP GLU LEU TYR SEQRES 17 A 466 LEU ASN LEU VAL LEU GLU PHE VAL PRO GLU THR VAL TYR SEQRES 18 A 466 LYS VAL SER LYS GLN TYR ILE ARG VAL HIS GLN HIS MET SEQRES 19 A 466 PRO ILE ILE TYR VAL GLN LEU TYR ILE TYR GLN ILE CYS SEQRES 20 A 466 ARG ALA LEU ASN TYR LEU HIS GLN VAL ILE GLY VAL CYS SEQRES 21 A 466 HIS ARG ASP ILE LYS PRO GLN ASN LEU LEU VAL ASN PRO SEQRES 22 A 466 GLN THR HIS GLN LEU LYS ILE CYS ASP PHE GLY SER ALA SEQRES 23 A 466 LYS MET LEU VAL PRO GLY GLU PRO ASN ILE SER PTR ILE SEQRES 24 A 466 CYS SER ARG TYR TYR ARG ALA PRO GLU LEU ILE PHE GLY SEQRES 25 A 466 ALA THR GLU TYR THR THR ALA ILE ASP MET TRP SER VAL SEQRES 26 A 466 GLY CYS VAL LEU ALA GLU LEU LEU LEU GLY HIS PRO LEU SEQRES 27 A 466 PHE PRO GLY GLU SER GLY VAL ASP GLN LEU VAL GLU ILE SEQRES 28 A 466 ILE LYS VAL LEU GLY THR PRO THR ARG GLU GLU ILE ARG SEQRES 29 A 466 CYS MET ASN PRO HIS TYR ASN GLU PHE LYS PHE PRO GLN SEQRES 30 A 466 ILE LYS ALA HIS PRO TRP HIS LYS VAL PHE TYR LYS ARG SEQRES 31 A 466 MET PRO PRO GLU ALA VAL ASP LEU VAL SER ARG LEU LEU SEQRES 32 A 466 GLN TYR SER PRO ASN LEU ARG CYS THR ALA LEU ALA ALA SEQRES 33 A 466 CYS ALA HIS PRO PHE PHE ASN ASP LEU ARG ASP PRO ASN SEQRES 34 A 466 ALA SER LEU PRO ASN GLY GLN PRO LEU PRO PRO LEU PHE SEQRES 35 A 466 ASN PHE THR PRO GLU GLU LEU ALA HIS ALA PRO ASP GLU SEQRES 36 A 466 LEU ARG LEU ARG LEU ILE PRO GLU HIS ARG SER MODRES 8QCW PTR A 298 TYR MODIFIED RESIDUE HET PTR A 298 16 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 HOH *8(H2 O) HELIX 1 AA1 ARG A 178 THR A 185 1 8 HELIX 2 AA2 VAL A 220 VAL A 230 1 11 HELIX 3 AA3 PRO A 235 VAL A 256 1 22 HELIX 4 AA4 LYS A 265 GLN A 267 5 3 HELIX 5 AA5 SER A 301 ARG A 305 5 5 HELIX 6 AA6 ALA A 306 PHE A 311 1 6 HELIX 7 AA7 THR A 318 GLY A 335 1 18 HELIX 8 AA8 SER A 343 GLY A 356 1 14 HELIX 9 AA9 THR A 359 ASN A 367 1 9 HELIX 10 AB1 PRO A 368 ASN A 371 5 4 HELIX 11 AB2 PRO A 382 VAL A 386 5 5 HELIX 12 AB3 PRO A 392 LEU A 403 1 12 HELIX 13 AB4 THR A 412 ALA A 418 1 7 HELIX 14 AB5 HIS A 419 ASP A 427 5 9 HELIX 15 AB6 PRO A 453 ILE A 461 1 9 SHEET 1 AA1 7 SER A 108 VAL A 110 0 SHEET 2 AA1 7 THR A 117 ILE A 120 -1 O THR A 117 N VAL A 110 SHEET 3 AA1 7 ILE A 136 VAL A 143 -1 O ILE A 136 N ILE A 120 SHEET 4 AA1 7 VAL A 151 CYS A 157 -1 O GLN A 154 N ARG A 142 SHEET 5 AA1 7 ALA A 163 LEU A 170 -1 O VAL A 164 N ALA A 155 SHEET 6 AA1 7 TYR A 208 GLU A 214 -1 O LEU A 209 N VAL A 169 SHEET 7 AA1 7 LEU A 194 PHE A 199 -1 N PHE A 198 O ASN A 210 SHEET 1 AA2 3 GLU A 218 THR A 219 0 SHEET 2 AA2 3 LEU A 269 VAL A 271 -1 O VAL A 271 N GLU A 218 SHEET 3 AA2 3 LEU A 278 ILE A 280 -1 O LYS A 279 N LEU A 270 LINK C SER A 297 N PTR A 298 1555 1555 1.42 LINK C PTR A 298 N ILE A 299 1555 1555 1.43 CRYST1 55.318 69.323 99.641 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018077 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010036 0.00000