HEADER LYASE 28-AUG-23 8QD6 TITLE ANTI SER245DHA (PMSF) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTORHABDUS LUMINESCENS SUBSP. LAUMONDII TTO1 COMPLETE COMPND 3 GENOME SEGMENT 15/17; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTORHABDUS LAUMONDII SUBSP. LAUMONDII TTO1; SOURCE 3 ORGANISM_TAXID: 243265; SOURCE 4 GENE: PLU4186; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOLADUET KEYWDS NATURAL PRODUCT BIOSYNTHESIS, POLYKETIDE SYNTHASE SYSTEM, ALPHA, KEYWDS 2 BETA-HYDROLASE FOLD, POLYKETIDE SHORTENING, RETRO CLAISEN REACTION, KEYWDS 3 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHMALHOFER,A.L.VAGSTAD,Q.ZHOU,H.B.BODE,M.GROLL REVDAT 2 27-MAR-24 8QD6 1 JRNL REVDAT 1 13-MAR-24 8QD6 0 JRNL AUTH M.SCHMALHOFER,A.L.VAGSTAD,Q.ZHOU,H.B.BODE,M.GROLL JRNL TITL POLYKETIDE TRIMMING SHAPES DIHYDROXYNAPHTHALENE-MELANIN AND JRNL TITL 2 ANTHRAQUINONE PIGMENTS. JRNL REF ADV SCI 00184 2024 JRNL REFN ESSN 2198-3844 JRNL PMID 38491909 JRNL DOI 10.1002/ADVS.202400184 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 40299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2948 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.54000 REMARK 3 B22 (A**2) : -22.49000 REMARK 3 B33 (A**2) : 2.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.020 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.020 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3104 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2850 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4207 ; 1.178 ; 1.621 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6551 ; 1.186 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 6.601 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;31.939 ;23.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;12.253 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;22.815 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3539 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 749 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1512 ; 1.011 ; 2.265 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1510 ; 1.004 ; 2.264 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1888 ; 1.381 ; 3.401 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1889 ; 1.381 ; 3.402 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1592 ; 0.984 ; 2.419 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1593 ; 0.984 ; 2.420 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2318 ; 1.294 ; 3.572 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3555 ; 2.044 ;27.325 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3511 ; 1.950 ;26.868 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5949 ; 0.498 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 381 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0100 17.2503 94.2247 REMARK 3 T TENSOR REMARK 3 T11: 0.0198 T22: 0.0273 REMARK 3 T33: 0.0261 T12: -0.0086 REMARK 3 T13: 0.0018 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.0953 L22: 1.6282 REMARK 3 L33: 1.7305 L12: 0.1746 REMARK 3 L13: -0.3259 L23: -0.1986 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: -0.0111 S13: 0.1424 REMARK 3 S21: -0.0113 S22: 0.0226 S23: -0.0563 REMARK 3 S31: -0.1797 S32: 0.0698 S33: -0.0320 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42427 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.1, 0.1 M NAAC PH REMARK 280 6.6, 24% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.68500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.68500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.36000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.48500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.36000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.48500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.68500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.36000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.48500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.68500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.36000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.48500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 182.74000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 605 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 651 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 725 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 SER A -5 REMARK 465 GLN A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 ASN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 382 REMARK 465 LYS A 383 REMARK 465 GLY A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 5 CG OD1 ND2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 ARG A 9 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 TYR A 130 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LYS A 336 CG CD CE NZ REMARK 470 ASP A 343 CG OD1 OD2 REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 27 -129.21 53.19 REMARK 500 ASP A 143 -128.01 56.41 REMARK 500 ILE A 180 -80.66 -106.72 REMARK 500 ARG A 282 -129.20 54.99 REMARK 500 VAL A 356 -4.89 79.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 228 O REMARK 620 2 GLU A 229 O 79.2 REMARK 620 3 ASP A 231 O 82.3 103.4 REMARK 620 4 ILE A 234 O 106.0 170.4 85.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HXA RELATED DB: PDB REMARK 900 ANTI FROM P. LUMINESCENS CATALYSES TERMINAL POLYKETIDE SHORTENING REMARK 900 IN THE BIOSYNTHESIS OF ANTHRAQUINONES DBREF 8QD6 A 1 384 UNP Q7MZT8 Q7MZT8_PHOLL 1 384 SEQADV 8QD6 MET A -15 UNP Q7MZT8 INITIATING METHIONINE SEQADV 8QD6 GLY A -14 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 SER A -13 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 SER A -12 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 HIS A -11 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 HIS A -10 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 HIS A -9 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 HIS A -8 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 HIS A -7 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 HIS A -6 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 SER A -5 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 GLN A -4 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 ASP A -3 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 PRO A -2 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 ASN A -1 UNP Q7MZT8 EXPRESSION TAG SEQADV 8QD6 SER A 0 UNP Q7MZT8 EXPRESSION TAG SEQRES 1 A 400 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 400 PRO ASN SER MET ASN ASN LYS ASN LYS PRO ASN ARG ILE SEQRES 3 A 400 SER PRO GLU LEU LEU ALA THR CYS GLY TYR PHE MET PRO SEQRES 4 A 400 ARG ILE PHE PHE LEU ASN SER GLN TYR ALA PRO GLN VAL SEQRES 5 A 400 HIS TRP GLY ASP VAL VAL ALA ALA LEU SER HIS PHE PRO SEQRES 6 A 400 ALA GLY ASN LEU ASP LEU SER SER GLU GLU PHE TRP TYR SEQRES 7 A 400 GLU TRP MET ILE ASN TRP SER LYS VAL GLY ASP SER TYR SEQRES 8 A 400 ILE ASN ILE ALA ASN SER ALA LYS SER GLU VAL SER HIS SEQRES 9 A 400 VAL ARG ALA LEU ARG SER ALA ALA ALA CYS TYR HIS TRP SEQRES 10 A 400 ALA GLU PHE MET TYR PHE SER ASP ARG SER ARG LYS ILE SEQRES 11 A 400 GLN LEU ARG GLU TYR ILE ARG SER CYS PHE LEU SER SER SEQRES 12 A 400 ILE LYS TYR SER ASP LEU LEU VAL ASP HIS GLN TYR ILE SEQRES 13 A 400 VAL VAL ASP LYS PHE HIS MET PRO PHE PHE LEU ILE PHE SEQRES 14 A 400 PRO LYS GLY TYR LYS GLU GLU GLU ASN HIS PRO LEU PRO SEQRES 15 A 400 CYS VAL ILE LEU SER ASN GLY LEU ASP SER MET THR GLU SEQRES 16 A 400 ILE GLU ILE LEU SER LEU ALA GLU PHE PHE LEU GLY LYS SEQRES 17 A 400 ASN MET ALA VAL ALA ILE PHE ASP GLY PRO GLY GLN GLY SEQRES 18 A 400 ILE ASN LEU GLY LYS SER PRO ILE ALA ILE ASP MET GLU SEQRES 19 A 400 LEU TYR VAL SER SER ILE VAL LYS LEU LEU GLU ASP ASP SEQRES 20 A 400 ALA ARG ILE ASN SER ASN LEU LEU CYS PHE LEU GLY ILE SEQRES 21 A 400 DHA PHE GLY GLY TYR PHE ALA LEU ARG VAL ALA GLN ARG SEQRES 22 A 400 ILE GLY ASP LYS PHE CYS CYS ILE VAL ASN LEU SER GLY SEQRES 23 A 400 GLY PRO GLU ILE ALA GLU PHE ASP LYS LEU PRO ARG ARG SEQRES 24 A 400 LEU LYS GLU ASP PHE GLN PHE ALA PHE MET GLN ASP ASN SEQRES 25 A 400 SER HIS MET GLN SER ILE PHE ASP GLU ILE LYS LEU ASP SEQRES 26 A 400 ILE SER LEU PRO CYS LYS THR LYS VAL PHE THR VAL HIS SEQRES 27 A 400 GLY GLU LEU ASP ASP ILE PHE GLN ILE ASP LYS VAL LYS SEQRES 28 A 400 LYS LEU ASP GLN LEU TRP GLY ASP ASN HIS GLN LEU LEU SEQRES 29 A 400 CYS TYR GLU SER GLU ALA HIS VAL CYS LEU ASN LYS ILE SEQRES 30 A 400 ASN GLU TYR MET ILE GLN VAL SER ASP TRP VAL SER GLU SEQRES 31 A 400 GLN PHE TRP LEU ASN GLY TYR LYS LYS GLY MODRES 8QD6 DHA A 245 SER MODIFIED RESIDUE HET DHA A 245 5 HET NA A 401 1 HET PG4 A 402 13 HET ACT A 403 4 HETNAM DHA 2-AMINO-ACRYLIC ACID HETNAM NA SODIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM ACT ACETATE ION HETSYN DHA 2,3-DIDEHYDROALANINE FORMUL 1 DHA C3 H5 N O2 FORMUL 2 NA NA 1+ FORMUL 3 PG4 C8 H18 O5 FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *228(H2 O) HELIX 1 AA1 SER A 11 CYS A 18 1 8 HELIX 2 AA2 PHE A 21 PHE A 27 1 7 HELIX 3 AA3 HIS A 37 SER A 46 1 10 HELIX 4 AA4 SER A 57 ALA A 82 1 26 HELIX 5 AA5 SER A 84 PHE A 104 1 21 HELIX 6 AA6 ASP A 109 SER A 131 1 23 HELIX 7 AA7 LYS A 158 ASN A 162 5 5 HELIX 8 AA8 ILE A 180 GLY A 191 1 12 HELIX 9 AA9 GLN A 204 LEU A 208 5 5 HELIX 10 AB1 MET A 217 ASP A 231 1 15 HELIX 11 AB2 DHA A 245 GLY A 259 1 15 HELIX 12 AB3 ASP A 260 PHE A 262 5 3 HELIX 13 AB4 GLU A 276 LEU A 280 5 5 HELIX 14 AB5 ARG A 283 MET A 293 1 11 HELIX 15 AB6 ASP A 295 SER A 297 5 3 HELIX 16 AB7 HIS A 298 LYS A 307 1 10 HELIX 17 AB8 GLN A 330 GLY A 342 1 13 HELIX 18 AB9 CYS A 357 ASN A 359 5 3 HELIX 19 AC1 LYS A 360 ASN A 379 1 20 SHEET 1 AA1 8 VAL A 135 VAL A 142 0 SHEET 2 AA1 8 PHE A 145 ILE A 152 -1 O LEU A 151 N ASP A 136 SHEET 3 AA1 8 ALA A 195 PHE A 199 -1 O VAL A 196 N ILE A 152 SHEET 4 AA1 8 LEU A 165 SER A 171 1 N PRO A 166 O ALA A 195 SHEET 5 AA1 8 ILE A 234 ILE A 244 1 O ASN A 235 N LEU A 165 SHEET 6 AA1 8 CYS A 264 LEU A 268 1 O LEU A 268 N GLY A 243 SHEET 7 AA1 8 LYS A 317 GLY A 323 1 O PHE A 319 N ASN A 267 SHEET 8 AA1 8 HIS A 345 TYR A 350 1 O LEU A 348 N THR A 320 LINK C ILE A 244 N DHA A 245 1555 1555 1.33 LINK C DHA A 245 N PHE A 246 1555 1555 1.33 LINK O LEU A 228 NA NA A 401 1555 1555 2.54 LINK O GLU A 229 NA NA A 401 1555 1555 3.10 LINK O ASP A 231 NA NA A 401 1555 1555 2.30 LINK O ILE A 234 NA NA A 401 1555 1555 2.46 CRYST1 54.720 154.970 91.370 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018275 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010945 0.00000