HEADER TRANSCRIPTION 29-AUG-23 8QDF TITLE ENGINEERED LMRR WITH MET-89 REPLACED BY PARA-BORONOPHENYLALANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, PADR-LIKE FAMILY; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: LMRR CARRYING A C-TERMINAL STREP-TAG, WITH M89 COMPND 7 REPLACED WITH PARA-BORONOPHENYLALANINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS CREMORIS SUBSP. CREMORIS MG1363; SOURCE 3 ORGANISM_TAXID: 416870; SOURCE 4 GENE: LLMG_0323; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARTIFICIAL ENZYME, BORON CATALYSIS, UNNATURAL AMINO ACID, 4- KEYWDS 2 BORONOPHENYLALANINE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.M.W.H.THUNNISSEN,H.J.ROZEBOOM,L.LONGWITZ,R.B.LEVESON-GOWER, AUTHOR 2 G.ROELFES REVDAT 3 05-JUN-24 8QDF 1 JRNL REVDAT 2 22-MAY-24 8QDF 1 JRNL REVDAT 1 01-MAY-24 8QDF 0 JRNL AUTH L.LONGWITZ,R.B.LEVESON-GOWER,H.J.ROZEBOOM,A.W.H.THUNNISSEN, JRNL AUTH 2 G.ROELFES JRNL TITL BORON CATALYSIS IN A DESIGNER ENZYME. JRNL REF NATURE V. 629 824 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 38720081 JRNL DOI 10.1038/S41586-024-07391-3 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20RC1_4395: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 22682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 1194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3700 - 4.5700 0.99 2462 128 0.1707 0.1924 REMARK 3 2 4.5700 - 3.6300 0.99 2406 133 0.1638 0.2621 REMARK 3 3 3.6300 - 3.1700 0.99 2376 146 0.2092 0.3025 REMARK 3 4 3.1700 - 2.8800 1.00 2370 140 0.2386 0.3101 REMARK 3 5 2.8800 - 2.6700 1.00 2394 137 0.2511 0.3071 REMARK 3 6 2.6700 - 2.5200 0.99 2376 128 0.2480 0.3448 REMARK 3 7 2.5200 - 2.3900 0.99 2339 138 0.2286 0.2874 REMARK 3 8 2.3900 - 2.2900 0.99 2373 121 0.2386 0.3281 REMARK 3 9 2.2900 - 2.2000 0.99 2392 123 0.2537 0.3308 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3570 REMARK 3 ANGLE : 1.322 4803 REMARK 3 CHIRALITY : 0.063 509 REMARK 3 PLANARITY : 0.012 618 REMARK 3 DIHEDRAL : 13.579 1395 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2391 8.8429 -32.5258 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.1058 REMARK 3 T33: 0.2003 T12: 0.0207 REMARK 3 T13: 0.0112 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: -0.0383 L22: 0.0139 REMARK 3 L33: 0.0599 L12: 0.0001 REMARK 3 L13: 0.0289 L23: 0.0452 REMARK 3 S TENSOR REMARK 3 S11: -0.1476 S12: -0.0512 S13: 0.1556 REMARK 3 S21: 0.0427 S22: 0.1104 S23: -0.1701 REMARK 3 S31: -0.0296 S32: -0.0234 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9889 9.6928 -41.1547 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.1739 REMARK 3 T33: 0.2222 T12: -0.0121 REMARK 3 T13: -0.0203 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0587 L22: 0.0125 REMARK 3 L33: 0.0680 L12: 0.0115 REMARK 3 L13: -0.0437 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: 0.2182 S12: -0.0916 S13: -0.0009 REMARK 3 S21: -0.1125 S22: 0.0653 S23: -0.1285 REMARK 3 S31: -0.2319 S32: 0.2264 S33: 0.0074 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2665 0.4682 -41.1872 REMARK 3 T TENSOR REMARK 3 T11: 0.2879 T22: 0.1756 REMARK 3 T33: 0.2323 T12: -0.0224 REMARK 3 T13: 0.0276 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.0061 L22: 0.0169 REMARK 3 L33: 0.0399 L12: 0.0138 REMARK 3 L13: 0.0027 L23: -0.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: 0.1952 S13: 0.0660 REMARK 3 S21: -0.1382 S22: -0.0074 S23: -0.1183 REMARK 3 S31: 0.2116 S32: 0.0619 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4663 6.8932 -52.4912 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.2392 REMARK 3 T33: 0.2546 T12: 0.0705 REMARK 3 T13: -0.0237 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.0960 L22: 0.1127 REMARK 3 L33: 0.1418 L12: -0.0064 REMARK 3 L13: -0.0638 L23: 0.1142 REMARK 3 S TENSOR REMARK 3 S11: -0.0722 S12: 0.1242 S13: -0.1912 REMARK 3 S21: 0.0594 S22: -0.3829 S23: -0.0238 REMARK 3 S31: -0.1293 S32: 0.0451 S33: -0.0089 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4134 18.1144 -27.9881 REMARK 3 T TENSOR REMARK 3 T11: 0.4020 T22: 0.1795 REMARK 3 T33: 0.2778 T12: 0.0196 REMARK 3 T13: 0.0490 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.3703 L22: 0.0394 REMARK 3 L33: 0.0626 L12: 0.0342 REMARK 3 L13: -0.1515 L23: -0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.3923 S12: -0.0317 S13: -0.1466 REMARK 3 S21: 0.6108 S22: -0.3336 S23: 0.9356 REMARK 3 S31: -0.5049 S32: -0.1272 S33: 0.0155 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3064 12.3464 -14.7611 REMARK 3 T TENSOR REMARK 3 T11: 0.2766 T22: 0.1721 REMARK 3 T33: 0.1836 T12: 0.0089 REMARK 3 T13: 0.0476 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.0025 L22: 0.0290 REMARK 3 L33: 0.1403 L12: -0.0601 REMARK 3 L13: -0.0288 L23: -0.0323 REMARK 3 S TENSOR REMARK 3 S11: 0.0727 S12: 0.0311 S13: -0.0674 REMARK 3 S21: -0.0796 S22: 0.0624 S23: 0.0593 REMARK 3 S31: -0.2288 S32: 0.0301 S33: 0.0034 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7185 1.0283 -11.6997 REMARK 3 T TENSOR REMARK 3 T11: 0.3461 T22: 0.1422 REMARK 3 T33: 0.3011 T12: 0.0523 REMARK 3 T13: 0.1202 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 0.1144 L22: 0.0364 REMARK 3 L33: 0.0483 L12: -0.0172 REMARK 3 L13: 0.0698 L23: -0.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: 0.0558 S13: -0.2035 REMARK 3 S21: -0.0254 S22: -0.2138 S23: -0.0401 REMARK 3 S31: 0.1632 S32: -0.3142 S33: 0.0011 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7396 11.1273 -13.9791 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.3503 REMARK 3 T33: 0.1911 T12: 0.0174 REMARK 3 T13: -0.0064 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.3338 L22: 0.3578 REMARK 3 L33: 0.7037 L12: -0.1432 REMARK 3 L13: -0.3696 L23: 0.0121 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: -0.4816 S13: 0.0948 REMARK 3 S21: -0.0774 S22: 0.0705 S23: -0.1034 REMARK 3 S31: -0.0904 S32: 0.5140 S33: 0.0678 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 4 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4631 33.9956 2.7494 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.3085 REMARK 3 T33: 0.2509 T12: -0.0158 REMARK 3 T13: -0.0334 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.1469 L22: 0.2594 REMARK 3 L33: 0.1318 L12: -0.1419 REMARK 3 L13: -0.0105 L23: 0.0680 REMARK 3 S TENSOR REMARK 3 S11: 0.1861 S12: -0.1255 S13: -0.0678 REMARK 3 S21: -0.1476 S22: 0.0856 S23: 0.0039 REMARK 3 S31: -0.0539 S32: -0.2288 S33: 0.0107 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 47 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2061 26.2182 7.1351 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.2812 REMARK 3 T33: 0.3679 T12: 0.0354 REMARK 3 T13: -0.0252 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.0182 L22: 0.0106 REMARK 3 L33: 0.0227 L12: 0.0228 REMARK 3 L13: 0.0186 L23: 0.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.1811 S12: 0.0013 S13: -0.1864 REMARK 3 S21: 0.1095 S22: -0.0682 S23: 0.2667 REMARK 3 S31: 0.1899 S32: -0.0768 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 60 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0061 38.7573 3.6746 REMARK 3 T TENSOR REMARK 3 T11: 0.1256 T22: 0.4531 REMARK 3 T33: 0.2656 T12: -0.0949 REMARK 3 T13: -0.1256 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.3983 L22: 0.6789 REMARK 3 L33: 0.3574 L12: -0.5094 REMARK 3 L13: -0.0330 L23: 0.2326 REMARK 3 S TENSOR REMARK 3 S11: 0.1103 S12: -0.4527 S13: 0.1052 REMARK 3 S21: -0.3361 S22: -0.0512 S23: -0.5202 REMARK 3 S31: -0.0506 S32: -0.2975 S33: 0.2159 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 4 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7483 34.8083 -15.5469 REMARK 3 T TENSOR REMARK 3 T11: 0.3433 T22: 0.3053 REMARK 3 T33: 0.2938 T12: 0.0402 REMARK 3 T13: 0.0023 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 0.0581 L22: -0.0094 REMARK 3 L33: 0.0702 L12: -0.0482 REMARK 3 L13: -0.0406 L23: 0.0154 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: 0.2030 S13: -0.0727 REMARK 3 S21: -0.0175 S22: -0.0994 S23: -0.3686 REMARK 3 S31: 0.2404 S32: -0.1285 S33: -0.0033 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 24 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9435 40.7106 -24.0817 REMARK 3 T TENSOR REMARK 3 T11: 0.2227 T22: 0.2413 REMARK 3 T33: 0.3001 T12: 0.0249 REMARK 3 T13: 0.0401 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.0545 L22: 0.0828 REMARK 3 L33: 0.0418 L12: -0.0188 REMARK 3 L13: -0.0301 L23: -0.0553 REMARK 3 S TENSOR REMARK 3 S11: 0.4443 S12: 0.1152 S13: 0.0968 REMARK 3 S21: 0.1442 S22: -0.1100 S23: -0.0061 REMARK 3 S31: -0.0767 S32: -0.2384 S33: -0.0001 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 47 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7453 26.1931 -23.5153 REMARK 3 T TENSOR REMARK 3 T11: 0.4246 T22: 0.3100 REMARK 3 T33: 0.3867 T12: -0.0590 REMARK 3 T13: 0.0337 T23: 0.0661 REMARK 3 L TENSOR REMARK 3 L11: 0.0034 L22: 0.0296 REMARK 3 L33: 0.0080 L12: -0.0046 REMARK 3 L13: 0.0030 L23: 0.0086 REMARK 3 S TENSOR REMARK 3 S11: -0.0306 S12: 0.1418 S13: -0.0080 REMARK 3 S21: 0.0323 S22: -0.0650 S23: 0.0034 REMARK 3 S31: 0.1474 S32: -0.0309 S33: -0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 60 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7322 35.1581 -21.4120 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.6172 REMARK 3 T33: 0.2549 T12: -0.0736 REMARK 3 T13: -0.0496 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 0.1515 L22: 0.7730 REMARK 3 L33: 0.5202 L12: 0.1413 REMARK 3 L13: -0.0229 L23: -0.4029 REMARK 3 S TENSOR REMARK 3 S11: -0.1070 S12: 0.6439 S13: 0.1831 REMARK 3 S21: 0.0454 S22: 0.1526 S23: 0.0954 REMARK 3 S31: 0.1498 S32: -0.2663 S33: 0.2029 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292133037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96546 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 3.8.6 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22769 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 53.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CONCENTRATED TO 9 MG/ML IN REMARK 280 20 MM TRIS-HCL, PH 8.0, 280 MM NACL AND 1 MM EDTA. RESERVOIR REMARK 280 SOLUTION CONTAINED 25% PEG 1500 IN 0.1 M MALONATE/IMIDAZOLE/ REMARK 280 BORIC ACID BUFFER, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.94500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 108 REMARK 465 ASN A 109 REMARK 465 LYS A 110 REMARK 465 LYS A 111 REMARK 465 SER A 112 REMARK 465 GLU A 113 REMARK 465 ALA A 114 REMARK 465 ILE A 115 REMARK 465 LYS A 116 REMARK 465 SER A 117 REMARK 465 ARG A 118 REMARK 465 TRP A 119 REMARK 465 SER A 120 REMARK 465 HIS A 121 REMARK 465 PRO A 122 REMARK 465 GLN A 123 REMARK 465 PHE A 124 REMARK 465 GLU A 125 REMARK 465 LYS A 126 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 111 REMARK 465 SER B 112 REMARK 465 GLU B 113 REMARK 465 ALA B 114 REMARK 465 ILE B 115 REMARK 465 LYS B 116 REMARK 465 SER B 117 REMARK 465 ARG B 118 REMARK 465 TRP B 119 REMARK 465 SER B 120 REMARK 465 HIS B 121 REMARK 465 PRO B 122 REMARK 465 GLN B 123 REMARK 465 PHE B 124 REMARK 465 GLU B 125 REMARK 465 LYS B 126 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 LYS C 110 REMARK 465 LYS C 111 REMARK 465 SER C 112 REMARK 465 GLU C 113 REMARK 465 ALA C 114 REMARK 465 ILE C 115 REMARK 465 LYS C 116 REMARK 465 SER C 117 REMARK 465 ARG C 118 REMARK 465 TRP C 119 REMARK 465 SER C 120 REMARK 465 HIS C 121 REMARK 465 PRO C 122 REMARK 465 GLN C 123 REMARK 465 PHE C 124 REMARK 465 GLU C 125 REMARK 465 LYS C 126 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLU D 3 REMARK 465 LYS D 110 REMARK 465 LYS D 111 REMARK 465 SER D 112 REMARK 465 GLU D 113 REMARK 465 ALA D 114 REMARK 465 ILE D 115 REMARK 465 LYS D 116 REMARK 465 SER D 117 REMARK 465 ARG D 118 REMARK 465 TRP D 119 REMARK 465 SER D 120 REMARK 465 HIS D 121 REMARK 465 PRO D 122 REMARK 465 GLN D 123 REMARK 465 PHE D 124 REMARK 465 GLU D 125 REMARK 465 LYS D 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 87 HH21 ARG C 90 1.47 REMARK 500 OE2 GLU B 87 HH21 ARG B 90 1.48 REMARK 500 HH TYR B 29 OE1 GLU B 47 1.59 REMARK 500 OD1 ASN B 14 NH2 ARG B 56 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG C 75 OD1 ASN C 109 2645 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 152.01 -49.63 REMARK 500 ASP B 25 150.65 -48.16 REMARK 500 ASP C 25 151.32 -49.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 8QDF A 1 116 UNP A2RI36 A2RI36_LACLM 1 116 DBREF 8QDF B 1 116 UNP A2RI36 A2RI36_LACLM 1 116 DBREF 8QDF C 1 116 UNP A2RI36 A2RI36_LACLM 1 116 DBREF 8QDF D 1 116 UNP A2RI36 A2RI36_LACLM 1 116 SEQADV 8QDF 7N8 A 89 UNP A2RI36 MET 89 ENGINEERED MUTATION SEQADV 8QDF SER A 117 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF ARG A 118 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF TRP A 119 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF SER A 120 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF HIS A 121 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF PRO A 122 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF GLN A 123 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF PHE A 124 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF GLU A 125 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF LYS A 126 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF 7N8 B 89 UNP A2RI36 MET 89 ENGINEERED MUTATION SEQADV 8QDF SER B 117 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF ARG B 118 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF TRP B 119 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF SER B 120 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF HIS B 121 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF PRO B 122 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF GLN B 123 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF PHE B 124 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF GLU B 125 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF LYS B 126 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF 7N8 C 89 UNP A2RI36 MET 89 ENGINEERED MUTATION SEQADV 8QDF SER C 117 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF ARG C 118 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF TRP C 119 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF SER C 120 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF HIS C 121 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF PRO C 122 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF GLN C 123 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF PHE C 124 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF GLU C 125 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF LYS C 126 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF 7N8 D 89 UNP A2RI36 MET 89 ENGINEERED MUTATION SEQADV 8QDF SER D 117 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF ARG D 118 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF TRP D 119 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF SER D 120 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF HIS D 121 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF PRO D 122 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF GLN D 123 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF PHE D 124 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF GLU D 125 UNP A2RI36 EXPRESSION TAG SEQADV 8QDF LYS D 126 UNP A2RI36 EXPRESSION TAG SEQRES 1 A 126 MET ALA GLU ILE PRO LYS GLU MET LEU ARG ALA GLN THR SEQRES 2 A 126 ASN VAL ILE LEU LEU ASN VAL LEU LYS GLN GLY ASP ASN SEQRES 3 A 126 TYR VAL TYR GLY ILE ILE LYS GLN VAL LYS GLU ALA SER SEQRES 4 A 126 ASN GLY GLU MET GLU LEU ASN GLU ALA THR LEU TYR THR SEQRES 5 A 126 ILE PHE LYS ARG LEU GLU LYS ASP GLY ILE ILE SER SER SEQRES 6 A 126 TYR TRP GLY ASP GLU SER GLN GLY GLY ARG ARG LYS TYR SEQRES 7 A 126 TYR ARG LEU THR GLU ILE GLY HIS GLU ASN 7N8 ARG LEU SEQRES 8 A 126 ALA PHE GLU SER TRP SER ARG VAL ASP LYS ILE ILE GLU SEQRES 9 A 126 ASN LEU GLU ALA ASN LYS LYS SER GLU ALA ILE LYS SER SEQRES 10 A 126 ARG TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 B 126 MET ALA GLU ILE PRO LYS GLU MET LEU ARG ALA GLN THR SEQRES 2 B 126 ASN VAL ILE LEU LEU ASN VAL LEU LYS GLN GLY ASP ASN SEQRES 3 B 126 TYR VAL TYR GLY ILE ILE LYS GLN VAL LYS GLU ALA SER SEQRES 4 B 126 ASN GLY GLU MET GLU LEU ASN GLU ALA THR LEU TYR THR SEQRES 5 B 126 ILE PHE LYS ARG LEU GLU LYS ASP GLY ILE ILE SER SER SEQRES 6 B 126 TYR TRP GLY ASP GLU SER GLN GLY GLY ARG ARG LYS TYR SEQRES 7 B 126 TYR ARG LEU THR GLU ILE GLY HIS GLU ASN 7N8 ARG LEU SEQRES 8 B 126 ALA PHE GLU SER TRP SER ARG VAL ASP LYS ILE ILE GLU SEQRES 9 B 126 ASN LEU GLU ALA ASN LYS LYS SER GLU ALA ILE LYS SER SEQRES 10 B 126 ARG TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 C 126 MET ALA GLU ILE PRO LYS GLU MET LEU ARG ALA GLN THR SEQRES 2 C 126 ASN VAL ILE LEU LEU ASN VAL LEU LYS GLN GLY ASP ASN SEQRES 3 C 126 TYR VAL TYR GLY ILE ILE LYS GLN VAL LYS GLU ALA SER SEQRES 4 C 126 ASN GLY GLU MET GLU LEU ASN GLU ALA THR LEU TYR THR SEQRES 5 C 126 ILE PHE LYS ARG LEU GLU LYS ASP GLY ILE ILE SER SER SEQRES 6 C 126 TYR TRP GLY ASP GLU SER GLN GLY GLY ARG ARG LYS TYR SEQRES 7 C 126 TYR ARG LEU THR GLU ILE GLY HIS GLU ASN 7N8 ARG LEU SEQRES 8 C 126 ALA PHE GLU SER TRP SER ARG VAL ASP LYS ILE ILE GLU SEQRES 9 C 126 ASN LEU GLU ALA ASN LYS LYS SER GLU ALA ILE LYS SER SEQRES 10 C 126 ARG TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 D 126 MET ALA GLU ILE PRO LYS GLU MET LEU ARG ALA GLN THR SEQRES 2 D 126 ASN VAL ILE LEU LEU ASN VAL LEU LYS GLN GLY ASP ASN SEQRES 3 D 126 TYR VAL TYR GLY ILE ILE LYS GLN VAL LYS GLU ALA SER SEQRES 4 D 126 ASN GLY GLU MET GLU LEU ASN GLU ALA THR LEU TYR THR SEQRES 5 D 126 ILE PHE LYS ARG LEU GLU LYS ASP GLY ILE ILE SER SER SEQRES 6 D 126 TYR TRP GLY ASP GLU SER GLN GLY GLY ARG ARG LYS TYR SEQRES 7 D 126 TYR ARG LEU THR GLU ILE GLY HIS GLU ASN 7N8 ARG LEU SEQRES 8 D 126 ALA PHE GLU SER TRP SER ARG VAL ASP LYS ILE ILE GLU SEQRES 9 D 126 ASN LEU GLU ALA ASN LYS LYS SER GLU ALA ILE LYS SER SEQRES 10 D 126 ARG TRP SER HIS PRO GLN PHE GLU LYS HET 7N8 A 89 24 HET 7N8 B 89 24 HET 7N8 C 89 24 HET 7N8 D 89 24 HETNAM 7N8 4-BORONO-L-PHENYLALANINE FORMUL 1 7N8 4(C9 H12 B N O4) FORMUL 5 HOH *86(H2 O) HELIX 1 AA1 PRO A 5 GLY A 24 1 20 HELIX 2 AA2 VAL A 28 SER A 39 1 12 HELIX 3 AA3 ASN A 46 ASP A 60 1 15 HELIX 4 AA4 THR A 82 GLU A 107 1 26 HELIX 5 AA5 PRO B 5 GLY B 24 1 20 HELIX 6 AA6 VAL B 28 SER B 39 1 12 HELIX 7 AA7 ASN B 46 ASP B 60 1 15 HELIX 8 AA8 THR B 82 LYS B 110 1 29 HELIX 9 AA9 PRO C 5 GLY C 24 1 20 HELIX 10 AB1 VAL C 28 SER C 39 1 12 HELIX 11 AB2 ASN C 46 ASP C 60 1 15 HELIX 12 AB3 THR C 82 ALA C 108 1 27 HELIX 13 AB4 PRO D 5 GLY D 24 1 20 HELIX 14 AB5 VAL D 28 SER D 39 1 12 HELIX 15 AB6 ASN D 46 ASP D 60 1 15 HELIX 16 AB7 THR D 82 ALA D 108 1 27 SHEET 1 AA1 3 ASN A 26 TYR A 27 0 SHEET 2 AA1 3 LYS A 77 LEU A 81 -1 O TYR A 79 N ASN A 26 SHEET 3 AA1 3 ILE A 63 TRP A 67 -1 N SER A 64 O ARG A 80 SHEET 1 AA2 3 ASN B 26 TYR B 27 0 SHEET 2 AA2 3 LYS B 77 LEU B 81 -1 O TYR B 79 N ASN B 26 SHEET 3 AA2 3 ILE B 63 TRP B 67 -1 N TYR B 66 O TYR B 78 SHEET 1 AA3 3 ASN C 26 TYR C 27 0 SHEET 2 AA3 3 LYS C 77 LEU C 81 -1 O TYR C 79 N ASN C 26 SHEET 3 AA3 3 ILE C 63 TRP C 67 -1 N TYR C 66 O TYR C 78 SHEET 1 AA4 3 ASN D 26 TYR D 27 0 SHEET 2 AA4 3 LYS D 77 LEU D 81 -1 O TYR D 79 N ASN D 26 SHEET 3 AA4 3 ILE D 63 TRP D 67 -1 N TYR D 66 O TYR D 78 LINK C ASN A 88 N 7N8 A 89 1555 1555 1.33 LINK C 7N8 A 89 N ARG A 90 1555 1555 1.33 LINK C ASN B 88 N 7N8 B 89 1555 1555 1.32 LINK C 7N8 B 89 N ARG B 90 1555 1555 1.34 LINK C ASN C 88 N 7N8 C 89 1555 1555 1.31 LINK C 7N8 C 89 N ARG C 90 1555 1555 1.34 LINK C ASN D 88 N 7N8 D 89 1555 1555 1.33 LINK C 7N8 D 89 N ARG D 90 1555 1555 1.35 CRYST1 60.674 53.890 69.034 90.00 95.45 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016482 0.000000 0.001572 0.00000 SCALE2 0.000000 0.018556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014551 0.00000