data_8QDU # _entry.id 8QDU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8QDU pdb_00008qdu 10.2210/pdb8qdu/pdb WWPDB D_1292133067 ? ? BMRB 34856 ? 10.13018/BMR34856 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-06-26 2 'Structure model' 1 1 2024-07-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8QDU _pdbx_database_status.recvd_initial_deposition_date 2023-08-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions ; _pdbx_database_related.db_id 34856 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email cgonzalez@iqf.csic.es _pdbx_contact_author.name_first Carlos _pdbx_contact_author.name_last Gonzalez _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8796-1282 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'El-Khoury, R.' 1 ? 'Cabrero, C.' 2 0000-0002-9031-1878 'Movilla, S.' 3 ? 'Thorpe, J.D.' 4 ? 'Roman, M.' 5 ? 'Orozco, M.' 6 ? 'Gonzalez, C.' 7 0000-0001-8796-1282 'Damha, M.J.' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 7414 _citation.page_last 7428 _citation.title ;Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkae508 _citation.pdbx_database_id_PubMed 38874502 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'El-Khoury, R.' 1 ? primary 'Cabrero, C.' 2 ? primary 'Movilla, S.' 3 ? primary 'Kaur, H.' 4 ? primary 'Friedland, D.' 5 ? primary 'Dominguez, A.' 6 ? primary 'Thorpe, J.D.' 7 ? primary 'Roman, M.' 8 ? primary 'Orozco, M.' 9 ? primary 'Gonzalez, C.' 10 ? primary 'Damha, M.J.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*(FC)P*GP*(FC)P*GP*(FC)P*G)-3') ; _entity.formula_weight 1864.178 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(CFL)(DG)(CFL)(DG)(CFL)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CFL n 1 2 DG n 1 3 CFL n 1 4 DG n 1 5 CFL n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CFL 'DNA linking' n '4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one' "2'-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" 'C9 H13 F N3 O7 P' 325.188 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CFL 1 1 1 CFL FC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 CFL 3 3 3 CFL FC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 CFL 5 5 5 CFL FC A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 CFL 1 7 7 CFL FC B . n B 1 2 DG 2 8 8 DG DG B . n B 1 3 CFL 3 9 9 CFL FC B . n B 1 4 DG 4 10 10 DG DG B . n B 1 5 CFL 5 11 11 CFL FC B . n B 1 6 DG 6 12 12 DG DG B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8QDU _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8QDU _struct.title ;Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8QDU _struct_keywords.text ;2'F-ANA, 2'F-RNA, Z-DNA, DNA ; _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8QDU _struct_ref.pdbx_db_accession 8QDU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8QDU A 1 ? 6 ? 8QDU 1 ? 6 ? 1 6 2 1 8QDU B 1 ? 6 ? 8QDU 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CFL 1 "O3'" ? ? ? 1_555 A DG 2 P ? ? A CFL 1 A DG 2 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale both ? A DG 2 "O3'" ? ? ? 1_555 A CFL 3 P ? ? A DG 2 A CFL 3 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale3 covale one ? A CFL 3 "O3'" ? ? ? 1_555 A DG 4 P ? ? A CFL 3 A DG 4 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale4 covale both ? A DG 4 "O3'" ? ? ? 1_555 A CFL 5 P ? ? A DG 4 A CFL 5 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale5 covale one ? A CFL 5 "O3'" ? ? ? 1_555 A DG 6 P ? ? A CFL 5 A DG 6 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale6 covale one ? B CFL 1 "O3'" ? ? ? 1_555 B DG 2 P ? ? B CFL 7 B DG 8 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale7 covale both ? B DG 2 "O3'" ? ? ? 1_555 B CFL 3 P ? ? B DG 8 B CFL 9 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale8 covale one ? B CFL 3 "O3'" ? ? ? 1_555 B DG 4 P ? ? B CFL 9 B DG 10 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale9 covale both ? B DG 4 "O3'" ? ? ? 1_555 B CFL 5 P ? ? B DG 10 B CFL 11 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale10 covale one ? B CFL 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B CFL 11 B DG 12 1_555 ? ? ? ? ? ? ? 1.623 ? ? hydrog1 hydrog ? ? A CFL 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A CFL 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A CFL 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A CFL 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A CFL 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A CFL 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B CFL 5 N3 ? ? A DG 2 B CFL 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B CFL 5 O2 ? ? A DG 2 B CFL 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B CFL 5 N4 ? ? A DG 2 B CFL 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A CFL 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A CFL 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A CFL 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A CFL 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A CFL 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A CFL 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B CFL 3 N3 ? ? A DG 4 B CFL 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B CFL 3 O2 ? ? A DG 4 B CFL 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B CFL 3 N4 ? ? A DG 4 B CFL 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A CFL 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A CFL 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A CFL 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A CFL 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A CFL 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A CFL 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B CFL 1 N3 ? ? A DG 6 B CFL 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B CFL 1 O2 ? ? A DG 6 B CFL 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B CFL 1 N4 ? ? A DG 6 B CFL 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.79 108.30 2.49 0.30 N 2 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 115.69 119.90 -4.21 0.70 N 3 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 115.69 119.90 -4.21 0.60 N 4 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.83 108.30 2.53 0.30 N 5 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.47 108.30 2.17 0.30 N 6 1 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 116.04 119.90 -3.86 0.60 N 7 1 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 116.05 119.90 -3.85 0.60 N 8 2 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 116.28 119.90 -3.62 0.60 N 9 2 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 116.17 119.90 -3.73 0.60 N 10 2 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 115.84 119.90 -4.06 0.60 N 11 2 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.84 108.30 2.54 0.30 N 12 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.26 108.30 1.96 0.30 N 13 3 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 116.17 119.90 -3.73 0.60 N 14 3 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.77 108.30 2.47 0.30 N 15 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.27 108.30 1.97 0.30 N 16 4 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 116.15 119.90 -3.75 0.60 N 17 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.78 108.30 2.48 0.30 N 18 4 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 114.76 119.90 -5.14 0.70 N 19 4 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 115.34 119.90 -4.56 0.60 N 20 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.30 108.30 3.00 0.30 N 21 4 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.03 119.90 -3.87 0.60 N 22 4 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.58 108.30 2.28 0.30 N 23 4 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 115.01 119.90 -4.89 0.70 N 24 4 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 116.00 119.90 -3.90 0.60 N 25 4 N3 B DG 10 ? ? C2 B DG 10 ? ? N2 B DG 10 ? ? 114.78 119.90 -5.12 0.70 N 26 4 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 116.00 119.90 -3.90 0.60 N 27 5 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 116.26 119.90 -3.64 0.60 N 28 5 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 116.14 119.90 -3.76 0.60 N 29 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.50 108.30 2.20 0.30 N 30 5 N3 B DG 10 ? ? C2 B DG 10 ? ? N2 B DG 10 ? ? 115.61 119.90 -4.29 0.70 N 31 5 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 116.08 119.90 -3.82 0.60 N 32 6 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 116.21 119.90 -3.69 0.60 N 33 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.16 108.30 1.86 0.30 N 34 6 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 115.97 119.90 -3.93 0.60 N 35 6 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.55 108.30 2.25 0.30 N 36 6 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.74 108.30 2.44 0.30 N 37 6 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 116.21 119.90 -3.69 0.60 N 38 6 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 115.79 119.90 -4.11 0.60 N 39 6 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.27 108.30 1.97 0.30 N 40 7 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 115.40 119.90 -4.50 0.70 N 41 7 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 115.94 119.90 -3.96 0.60 N 42 7 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.59 108.30 2.29 0.30 N 43 7 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.25 108.30 1.95 0.30 N 44 7 N3 B DG 10 ? ? C2 B DG 10 ? ? N2 B DG 10 ? ? 115.40 119.90 -4.50 0.70 N 45 7 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 115.91 119.90 -3.99 0.60 N 46 7 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.38 108.30 2.08 0.30 N 47 8 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.18 108.30 2.88 0.30 N 48 8 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 116.03 119.90 -3.87 0.60 N 49 8 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.53 108.30 2.23 0.30 N 50 8 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.26 108.30 1.96 0.30 N 51 8 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.25 108.30 1.95 0.30 N 52 8 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 116.13 119.90 -3.77 0.60 N 53 8 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.47 108.30 2.17 0.30 N 54 9 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.59 108.30 2.29 0.30 N 55 9 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 115.01 119.90 -4.89 0.70 N 56 9 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 116.27 119.90 -3.63 0.60 N 57 9 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.72 108.30 2.42 0.30 N 58 9 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 114.40 119.90 -5.50 0.70 N 59 9 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.10 119.90 -3.80 0.60 N 60 9 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.70 108.30 2.40 0.30 N 61 9 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 114.37 119.90 -5.53 0.70 N 62 9 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 115.93 119.90 -3.97 0.60 N 63 9 N3 B DG 10 ? ? C2 B DG 10 ? ? N2 B DG 10 ? ? 115.38 119.90 -4.52 0.70 N 64 9 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.75 108.30 2.45 0.30 N 65 10 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.26 108.30 1.96 0.30 N 66 10 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 116.28 119.90 -3.62 0.60 N 67 10 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.36 108.30 2.06 0.30 N 68 10 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 116.22 119.90 -3.68 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 2 ? ? 0.054 'SIDE CHAIN' 2 2 DG A 2 ? ? 0.056 'SIDE CHAIN' 3 2 DG B 8 ? ? 0.062 'SIDE CHAIN' 4 3 DG A 2 ? ? 0.061 'SIDE CHAIN' 5 3 DG B 8 ? ? 0.057 'SIDE CHAIN' 6 4 DG A 2 ? ? 0.083 'SIDE CHAIN' 7 4 DG A 4 ? ? 0.057 'SIDE CHAIN' 8 4 DG B 8 ? ? 0.064 'SIDE CHAIN' 9 4 DG B 10 ? ? 0.057 'SIDE CHAIN' 10 5 DG A 2 ? ? 0.070 'SIDE CHAIN' 11 5 DG B 8 ? ? 0.066 'SIDE CHAIN' 12 6 DG A 2 ? ? 0.065 'SIDE CHAIN' 13 6 DG B 8 ? ? 0.054 'SIDE CHAIN' 14 6 DG B 10 ? ? 0.060 'SIDE CHAIN' 15 7 DG A 2 ? ? 0.064 'SIDE CHAIN' 16 7 DG B 8 ? ? 0.059 'SIDE CHAIN' 17 8 DG A 2 ? ? 0.053 'SIDE CHAIN' 18 8 DG B 8 ? ? 0.062 'SIDE CHAIN' 19 9 DG A 2 ? ? 0.063 'SIDE CHAIN' 20 9 DG B 8 ? ? 0.069 'SIDE CHAIN' 21 10 DG A 2 ? ? 0.059 'SIDE CHAIN' 22 10 DG B 8 ? ? 0.058 'SIDE CHAIN' # _pdbx_entry_details.entry_id 8QDU _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification ? # _pdbx_nmr_ensemble.entry_id 8QDU _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8QDU _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.5 M DNA (5'-D(*(FC)P*GP*(FC)P*GP*(FC)P*G)-3'), 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 'natural abundance' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component ;DNA (5'-D(*(FC)P*GP*(FC)P*GP*(FC)P*G)-3') ; _pdbx_nmr_exptl_sample.concentration 0.5 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units M _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 288 atm 1 7 10 ? ? mM 1H ? pH ? ? K 2 298 atm 1 7 10 ? ? mM 19F ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic # _pdbx_nmr_refine.entry_id 8QDU _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing TopSpin ? 'Bruker Biospin' 3 'chemical shift assignment' NMRFAM-SPARKY ? 'Goddard & Kneller' 4 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 5 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 6 'data analysis' MOLMOL ? 'Koradi, Billeter and Wuthrich' 7 'data analysis' 3DNA ? 'Lu & Olson' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CFL O3P O N N 1 CFL P P N N 2 CFL O1P O N N 3 CFL O2P O N N 4 CFL "O5'" O N N 5 CFL "C5'" C N N 6 CFL "C4'" C N R 7 CFL "O4'" O N N 8 CFL "C3'" C N R 9 CFL "O3'" O N N 10 CFL "C2'" C N S 11 CFL "C1'" C N R 12 CFL N1 N N N 13 CFL C2 C N N 14 CFL O2 O N N 15 CFL N3 N N N 16 CFL C4 C N N 17 CFL N4 N N N 18 CFL C5 C N N 19 CFL C6 C N N 20 CFL F F N N 21 CFL HO3P H N N 22 CFL HO1P H N N 23 CFL "H5'1" H N N 24 CFL "H5'2" H N N 25 CFL "H4'" H N N 26 CFL "H3'" H N N 27 CFL "HO3'" H N N 28 CFL "H2'" H N N 29 CFL "H1'" H N N 30 CFL HN41 H N N 31 CFL HN42 H N N 32 CFL H5 H N N 33 CFL H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CFL O3P P sing N N 1 CFL O3P HO3P sing N N 2 CFL P O1P sing N N 3 CFL P O2P doub N N 4 CFL P "O5'" sing N N 5 CFL O1P HO1P sing N N 6 CFL "O5'" "C5'" sing N N 7 CFL "C5'" "C4'" sing N N 8 CFL "C5'" "H5'1" sing N N 9 CFL "C5'" "H5'2" sing N N 10 CFL "C4'" "O4'" sing N N 11 CFL "C4'" "C3'" sing N N 12 CFL "C4'" "H4'" sing N N 13 CFL "O4'" "C1'" sing N N 14 CFL "C3'" "O3'" sing N N 15 CFL "C3'" "C2'" sing N N 16 CFL "C3'" "H3'" sing N N 17 CFL "O3'" "HO3'" sing N N 18 CFL "C2'" "C1'" sing N N 19 CFL "C2'" F sing N N 20 CFL "C2'" "H2'" sing N N 21 CFL "C1'" N1 sing N N 22 CFL "C1'" "H1'" sing N N 23 CFL N1 C2 sing N N 24 CFL N1 C6 sing N N 25 CFL C2 O2 doub N N 26 CFL C2 N3 sing N N 27 CFL N3 C4 doub N N 28 CFL C4 N4 sing N N 29 CFL C4 C5 sing N N 30 CFL N4 HN41 sing N N 31 CFL N4 HN42 sing N N 32 CFL C5 C6 doub N N 33 CFL C5 H5 sing N N 34 CFL C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 # _ndb_struct_conf_na.entry_id 8QDU _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A CFL 1 1_555 B DG 6 1_555 -0.287 -0.183 -0.135 6.457 -7.677 0.398 1 A_CFL1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B CFL 5 1_555 -0.124 -0.136 -0.136 -4.616 -5.977 0.227 2 A_DG2:CFL11_B A 2 ? B 11 ? 19 1 1 A CFL 3 1_555 B DG 4 1_555 0.371 -0.136 -0.024 6.656 -13.761 -0.618 3 A_CFL3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B CFL 3 1_555 -0.437 -0.127 -0.146 -7.960 -12.515 -0.814 4 A_DG4:CFL9_B A 4 ? B 9 ? 19 1 1 A CFL 5 1_555 B DG 2 1_555 0.092 -0.128 -0.152 5.315 -5.295 -0.605 5 A_CFL5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B CFL 1 1_555 0.377 -0.191 -0.055 -7.132 -6.567 -0.499 6 A_DG6:CFL7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A CFL 1 1_555 B DG 6 1_555 A DG 2 1_555 B CFL 5 1_555 0.052 5.356 3.464 0.909 -5.563 -8.967 -14.869 2.594 5.738 31.779 5.193 -10.588 1 AA_CFL1DG2:CFL11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B CFL 5 1_555 A CFL 3 1_555 B DG 4 1_555 -0.276 -0.450 3.194 -1.420 -12.112 -31.430 2.659 -0.698 2.819 21.378 -2.507 -33.657 2 AA_DG2CFL3:DG10CFL11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A CFL 3 1_555 B DG 4 1_555 A DG 4 1_555 B CFL 3 1_555 -0.026 5.408 3.549 1.097 -9.551 -10.992 -7.005 1.538 6.207 41.013 4.712 -14.594 3 AA_CFL3DG4:CFL9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B CFL 3 1_555 A CFL 5 1_555 B DG 2 1_555 0.189 -0.446 3.134 0.740 -11.231 -31.961 2.464 0.437 2.817 19.650 1.294 -33.836 4 AA_DG4CFL5:DG8CFL9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A CFL 5 1_555 B DG 2 1_555 A DG 6 1_555 B CFL 1 1_555 -0.087 5.310 3.539 -1.268 -4.368 -9.390 -18.407 -3.614 5.395 24.855 -7.218 -10.432 5 AA_CFL5DG6:CFL7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Spanish Ministry of Science, Innovation, and Universities' Spain BFU2017-89707-P 1 'Spanish Ministry of Science, Innovation, and Universities' Spain PRE2018-083173 2 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'Neo AVANCE' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 8QDU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C F H N O P # loop_